Wall clock time and date at job start Fri Apr 10 2020 22:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47190 * 2 1 4 4 C 1.50693 * 109.47058 * 120.00237 * 2 1 3 5 5 H 1.08002 * 120.00331 * 114.37005 * 4 2 1 6 6 C 1.37885 * 120.00119 * 294.35814 * 4 2 1 7 7 N 1.31516 * 120.00168 * 156.60535 * 6 4 2 8 8 Si 1.86799 * 119.99974 * 336.88923 * 6 4 2 9 9 H 1.48495 * 109.47179 * 179.71887 * 8 6 4 10 10 H 1.48504 * 109.47000 * 299.71811 * 8 6 4 11 11 H 1.48500 * 109.47297 * 59.71926 * 8 6 4 12 12 N 1.46897 * 109.47069 * 240.00066 * 2 1 3 13 13 C 1.46910 * 110.99968 * 84.99944 * 12 2 1 14 14 C 1.52995 * 109.47174 * 180.02562 * 13 12 2 15 15 O 1.42905 * 109.47062 * 64.99858 * 14 13 12 16 16 C 1.35902 * 116.99688 * 179.97438 * 15 14 13 17 17 C 1.38727 * 120.05882 * 359.72769 * 16 15 14 18 18 C 1.38150 * 119.94275 * 179.73881 * 17 16 15 19 19 C 1.38258 * 120.05369 * 0.51532 * 18 17 16 20 20 S 1.76202 * 119.94133 * 179.73995 * 19 18 17 21 21 C 1.81399 * 104.44937 * 270.02010 * 20 19 18 22 22 O 1.42094 * 104.27982 * 26.09203 * 20 19 18 23 23 O 1.42104 * 104.27846 * 153.95079 * 20 19 18 24 24 C 1.38269 * 120.11666 * 359.76456 * 19 18 17 25 25 C 1.38141 * 120.05214 * 359.97438 * 24 19 18 26 26 H 1.09006 * 109.47378 * 53.10132 * 1 2 3 27 27 H 1.08996 * 109.47246 * 173.10534 * 1 2 3 28 28 H 1.09003 * 109.46967 * 293.10580 * 1 2 3 29 29 H 0.97002 * 119.99516 * 355.21605 * 7 6 4 30 30 H 1.00899 * 110.99860 * 321.05226 * 12 2 1 31 31 H 1.09000 * 109.46893 * 300.00418 * 13 12 2 32 32 H 1.08997 * 109.46937 * 60.00212 * 13 12 2 33 33 H 1.08993 * 109.47417 * 184.99956 * 14 13 12 34 34 H 1.08997 * 109.47202 * 305.00487 * 14 13 12 35 35 H 1.08003 * 120.02906 * 359.97438 * 17 16 15 36 36 H 1.08001 * 119.96652 * 180.22842 * 18 17 16 37 37 H 1.08998 * 109.47489 * 60.00275 * 21 20 19 38 38 H 1.09008 * 109.47145 * 180.02562 * 21 20 19 39 39 H 1.08999 * 109.47570 * 299.99675 * 21 20 19 40 40 H 1.07992 * 119.97331 * 180.02562 * 24 19 18 41 41 H 1.07999 * 120.03091 * 179.97438 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5762 -1.6385 1.1339 6 6 1.7978 -0.1755 2.4794 7 7 1.8025 -0.9538 3.5396 8 14 1.4655 1.6533 2.6648 9 1 1.2395 1.9726 4.0973 10 1 2.6336 2.4219 2.1647 11 1 0.2592 2.0194 1.8799 12 7 2.0196 -0.6925 -1.1994 13 6 2.0824 0.2227 -2.3469 14 6 2.5949 -0.5330 -3.5745 15 8 1.6491 -1.5385 -3.9441 16 6 1.9542 -2.3054 -5.0238 17 6 3.1367 -2.0908 -5.7167 18 6 3.4469 -2.8754 -6.8107 19 6 2.5751 -3.8667 -7.2215 20 16 2.9705 -4.8610 -8.6213 21 6 2.2579 -3.9654 -10.0286 22 8 4.3900 -4.8344 -8.6804 23 8 2.2693 -6.0765 -8.3971 24 6 1.3931 -4.0787 -6.5361 25 6 1.0808 -3.3005 -5.4383 26 1 -0.3634 0.6170 -0.8219 27 1 -0.3633 -1.0202 -0.1234 28 1 -0.3633 0.4033 0.9453 29 1 1.9017 -1.9132 3.4364 30 1 1.4495 -1.4978 -1.4101 31 1 1.0870 0.6164 -2.5525 32 1 2.7588 1.0462 -2.1183 33 1 2.7259 0.1642 -4.4019 34 1 3.5505 -1.0019 -3.3397 35 1 3.8160 -1.3136 -5.3989 36 1 4.3692 -2.7111 -7.3482 37 1 2.7070 -2.9743 -10.0937 38 1 2.4570 -4.5159 -10.9482 39 1 1.1812 -3.8681 -9.8899 40 1 0.7139 -4.8539 -6.8587 41 1 0.1572 -3.4661 -4.9034 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067407309.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:49:47 Heat of formation + Delta-G solvation = -78.806175 kcal Electronic energy + Delta-G solvation = -23071.369838 eV Core-core repulsion = 19465.266640 eV Total energy + Delta-G solvation = -3606.103198 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.118 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.43960 -37.96239 -37.40079 -36.25083 -36.13961 -32.85288 -31.54768 -31.00952 -30.15127 -29.72227 -27.18058 -24.76982 -23.59227 -23.21801 -21.47395 -20.02896 -19.34775 -18.68010 -17.67182 -17.49819 -16.55547 -16.52478 -16.19695 -15.65151 -15.07590 -14.59287 -14.32994 -14.25015 -13.85875 -13.78049 -13.63808 -13.54587 -13.37250 -12.98668 -12.78335 -12.38245 -12.29075 -12.10778 -11.99633 -11.81340 -11.50205 -11.40869 -11.27594 -11.01633 -11.00177 -10.82769 -10.45601 -10.08749 -9.77689 -9.42753 -9.06048 -8.79823 -8.18601 -7.53004 -6.44168 -4.00516 -0.26438 0.65120 0.97723 2.55987 2.96003 3.13947 3.36763 3.41673 3.59169 3.63498 3.77201 4.33613 4.34510 4.46785 4.50382 4.57551 4.73145 4.86341 4.96257 5.13600 5.17970 5.20377 5.21252 5.26248 5.49080 5.57057 5.62437 5.79041 5.88527 5.92381 5.99606 6.24696 6.35600 6.39741 6.59197 6.79582 7.11671 7.17476 7.73603 8.23007 8.31217 8.45715 9.02580 9.64043 10.93017 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.036165 B = 0.002227 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.047851 B =12570.811021 C =12708.674325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.190 3.810 3 H 0.025 0.975 4 C -0.590 4.590 5 H 0.063 0.937 6 C 0.033 3.967 7 N -0.901 5.901 8 Si 1.037 2.963 9 H -0.285 1.285 10 H -0.284 1.284 11 H -0.280 1.280 12 N -0.674 5.674 13 C 0.057 3.943 14 C 0.057 3.943 15 O -0.303 6.303 16 C 0.196 3.804 17 C -0.232 4.232 18 C 0.017 3.983 19 C -0.707 4.707 20 S 2.507 3.493 21 C -0.652 4.652 22 O -0.941 6.941 23 O -0.941 6.941 24 C 0.013 3.987 25 C -0.175 4.175 26 H 0.019 0.981 27 H 0.044 0.956 28 H 0.057 0.943 29 H 0.269 0.731 30 H 0.336 0.664 31 H 0.031 0.969 32 H 0.089 0.911 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.139 0.861 36 H 0.142 0.858 37 H 0.131 0.869 38 H 0.129 0.871 39 H 0.131 0.869 40 H 0.146 0.854 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.732 -1.672 -28.693 28.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.081 3.919 3 H 0.043 0.957 4 C -0.628 4.628 5 H 0.081 0.919 6 C -0.173 4.173 7 N -0.534 5.534 8 Si 0.865 3.135 9 H -0.211 1.211 10 H -0.211 1.211 11 H -0.207 1.207 12 N -0.305 5.305 13 C -0.073 4.073 14 C -0.018 4.018 15 O -0.215 6.215 16 C 0.148 3.852 17 C -0.251 4.251 18 C -0.002 4.002 19 C -0.795 4.795 20 S 2.687 3.313 21 C -0.801 4.801 22 O -0.939 6.939 23 O -0.938 6.938 24 C -0.005 4.005 25 C -0.195 4.195 26 H 0.038 0.962 27 H 0.063 0.937 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.154 0.846 31 H 0.049 0.951 32 H 0.107 0.893 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.157 0.843 36 H 0.160 0.840 37 H 0.149 0.851 38 H 0.148 0.852 39 H 0.150 0.850 40 H 0.164 0.836 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.041 -1.155 -27.239 27.263 hybrid contribution -0.949 -0.126 -1.206 1.540 sum -0.990 -1.281 -28.445 28.491 Atomic orbital electron populations 1.22821 1.01061 0.99829 0.99825 1.19498 0.89092 0.94367 0.88978 0.95732 1.21890 1.39801 1.10972 0.90159 0.91877 1.25657 0.93799 1.05664 0.92159 1.70841 1.44357 1.06346 1.31906 0.84145 0.76908 0.76328 0.76092 1.21059 1.21051 1.20659 1.60815 1.58297 1.08835 1.02521 1.22049 0.99869 0.95720 0.89668 1.23211 0.92501 0.88720 0.97319 1.86155 1.47232 1.45671 1.42419 1.19405 0.92159 0.88780 0.84847 1.21433 0.98627 1.05062 1.00019 1.20694 0.96300 0.89543 0.93649 1.30243 1.06170 1.18780 1.24303 1.04878 0.75037 0.75265 0.76126 1.30250 1.14396 1.15729 1.19761 1.93578 1.27115 1.86654 1.86519 1.93582 1.75241 1.40499 1.84467 1.20709 0.93299 0.94694 0.91845 1.20610 1.01526 0.97385 0.99947 0.96238 0.93682 0.92454 0.92081 0.84641 0.95063 0.89301 0.91737 0.90479 0.84318 0.83995 0.85076 0.85201 0.85021 0.83604 0.84108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.83 8.90 37.16 0.33 -3.50 16 2 C 0.19 4.44 2.17 -68.87 -0.15 4.29 16 3 H 0.02 0.58 6.37 -51.93 -0.33 0.25 16 4 C -0.59 -16.61 9.05 -34.44 -0.31 -16.92 16 5 H 0.06 1.95 8.06 -52.49 -0.42 1.53 16 6 C 0.03 0.94 5.19 -17.82 -0.09 0.85 16 7 N -0.90 -27.60 13.70 55.43 0.76 -26.84 16 8 Si 1.04 24.83 26.44 -169.99 -4.50 20.34 16 9 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.22 6.15 56.52 0.35 -5.87 16 12 N -0.67 -13.66 6.23 -107.95 -0.67 -14.33 16 13 C 0.06 0.89 5.90 -3.82 -0.02 0.87 16 14 C 0.06 0.72 5.08 37.15 0.19 0.91 16 15 O -0.30 -4.16 9.66 -19.43 -0.19 -4.34 16 16 C 0.20 2.38 6.69 -39.22 -0.26 2.12 16 17 C -0.23 -2.43 9.04 -39.43 -0.36 -2.79 16 18 C 0.02 0.16 9.46 -39.61 -0.37 -0.21 16 19 C -0.71 -6.41 5.66 -39.56 -0.22 -6.63 16 20 S 2.51 18.84 5.80 -107.50 -0.62 18.22 16 21 C -0.65 -2.05 10.80 101.05 1.09 -0.96 16 22 O -0.94 -10.15 17.12 -57.54 -0.99 -11.14 16 23 O -0.94 -10.14 17.12 -57.54 -0.99 -11.12 16 24 C 0.01 0.13 9.46 -39.61 -0.37 -0.25 16 25 C -0.18 -1.92 9.99 -39.43 -0.39 -2.31 16 26 H 0.02 0.36 7.64 -51.93 -0.40 -0.04 16 27 H 0.04 0.96 8.00 -51.93 -0.42 0.55 16 28 H 0.06 1.31 5.48 -51.93 -0.28 1.03 16 29 H 0.27 8.24 8.73 -40.82 -0.36 7.89 16 30 H 0.34 6.78 7.94 -39.29 -0.31 6.46 16 31 H 0.03 0.48 7.58 -51.93 -0.39 0.09 16 32 H 0.09 1.32 8.05 -51.93 -0.42 0.90 16 33 H 0.06 0.62 7.65 -51.93 -0.40 0.22 16 34 H 0.08 0.98 7.68 -51.93 -0.40 0.58 16 35 H 0.14 1.23 6.30 -52.48 -0.33 0.90 16 36 H 0.14 1.03 7.57 -52.49 -0.40 0.64 16 37 H 0.13 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.13 0.23 8.14 -51.92 -0.42 -0.19 16 39 H 0.13 0.24 8.14 -51.92 -0.42 -0.18 16 40 H 0.15 1.06 7.56 -52.49 -0.40 0.66 16 41 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 350.90 15.07 5.29 5.29 Total: -1.00 -36.20 350.90 -8.65 -44.85 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -5.79 Total: 3.62 kcal Atomic # 6 Polarization: -23.59 SS G_CDS: -0.95 Total: -24.55 kcal Atomic # 7 Polarization: -41.25 SS G_CDS: 0.09 Total: -41.17 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: -2.16 Total: -26.60 kcal Atomic # 14 Polarization: 24.83 SS G_CDS: -4.50 Total: 20.34 kcal Atomic # 16 Polarization: 18.84 SS G_CDS: -0.62 Total: 18.22 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -36.20 -8.65 -44.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067407309.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.957 kcal (2) G-P(sol) polarization free energy of solvation -36.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds