Wall clock time and date at job start Fri Apr 10 2020 22:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47190 * 2 1 4 4 C 1.50693 * 109.47058 * 120.00237 * 2 1 3 5 5 H 1.08002 * 120.00331 * 114.37005 * 4 2 1 6 6 C 1.37885 * 120.00119 * 294.35814 * 4 2 1 7 7 N 1.31516 * 120.00168 * 156.60535 * 6 4 2 8 8 Si 1.86799 * 119.99974 * 336.88923 * 6 4 2 9 9 H 1.48495 * 109.47179 * 179.71887 * 8 6 4 10 10 H 1.48504 * 109.47000 * 299.71811 * 8 6 4 11 11 H 1.48500 * 109.47297 * 59.71926 * 8 6 4 12 12 N 1.46897 * 109.47069 * 240.00066 * 2 1 3 13 13 C 1.46910 * 110.99968 * 84.99944 * 12 2 1 14 14 C 1.52995 * 109.47174 * 180.02562 * 13 12 2 15 15 O 1.42905 * 109.47062 * 64.99858 * 14 13 12 16 16 C 1.35902 * 116.99688 * 179.97438 * 15 14 13 17 17 C 1.38727 * 120.05882 * 359.72769 * 16 15 14 18 18 C 1.38150 * 119.94275 * 179.73881 * 17 16 15 19 19 C 1.38258 * 120.05369 * 0.51532 * 18 17 16 20 20 S 1.76202 * 119.94133 * 179.73995 * 19 18 17 21 21 C 1.81399 * 104.44937 * 270.02010 * 20 19 18 22 22 O 1.42094 * 104.27982 * 26.09203 * 20 19 18 23 23 O 1.42104 * 104.27846 * 153.95079 * 20 19 18 24 24 C 1.38269 * 120.11666 * 359.76456 * 19 18 17 25 25 C 1.38141 * 120.05214 * 359.97438 * 24 19 18 26 26 H 1.09006 * 109.47378 * 53.10132 * 1 2 3 27 27 H 1.08996 * 109.47246 * 173.10534 * 1 2 3 28 28 H 1.09003 * 109.46967 * 293.10580 * 1 2 3 29 29 H 0.97002 * 119.99516 * 355.21605 * 7 6 4 30 30 H 1.00899 * 110.99860 * 321.05226 * 12 2 1 31 31 H 1.09000 * 109.46893 * 300.00418 * 13 12 2 32 32 H 1.08997 * 109.46937 * 60.00212 * 13 12 2 33 33 H 1.08993 * 109.47417 * 184.99956 * 14 13 12 34 34 H 1.08997 * 109.47202 * 305.00487 * 14 13 12 35 35 H 1.08003 * 120.02906 * 359.97438 * 17 16 15 36 36 H 1.08001 * 119.96652 * 180.22842 * 18 17 16 37 37 H 1.08998 * 109.47489 * 60.00275 * 21 20 19 38 38 H 1.09008 * 109.47145 * 180.02562 * 21 20 19 39 39 H 1.08999 * 109.47570 * 299.99675 * 21 20 19 40 40 H 1.07992 * 119.97331 * 180.02562 * 24 19 18 41 41 H 1.07999 * 120.03091 * 179.97438 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5762 -1.6385 1.1339 6 6 1.7978 -0.1755 2.4794 7 7 1.8025 -0.9538 3.5396 8 14 1.4655 1.6533 2.6648 9 1 1.2395 1.9726 4.0973 10 1 2.6336 2.4219 2.1647 11 1 0.2592 2.0194 1.8799 12 7 2.0196 -0.6925 -1.1994 13 6 2.0824 0.2227 -2.3469 14 6 2.5949 -0.5330 -3.5745 15 8 1.6491 -1.5385 -3.9441 16 6 1.9542 -2.3054 -5.0238 17 6 3.1367 -2.0908 -5.7167 18 6 3.4469 -2.8754 -6.8107 19 6 2.5751 -3.8667 -7.2215 20 16 2.9705 -4.8610 -8.6213 21 6 2.2579 -3.9654 -10.0286 22 8 4.3900 -4.8344 -8.6804 23 8 2.2693 -6.0765 -8.3971 24 6 1.3931 -4.0787 -6.5361 25 6 1.0808 -3.3005 -5.4383 26 1 -0.3634 0.6170 -0.8219 27 1 -0.3633 -1.0202 -0.1234 28 1 -0.3633 0.4033 0.9453 29 1 1.9017 -1.9132 3.4364 30 1 1.4495 -1.4978 -1.4101 31 1 1.0870 0.6164 -2.5525 32 1 2.7588 1.0462 -2.1183 33 1 2.7259 0.1642 -4.4019 34 1 3.5505 -1.0019 -3.3397 35 1 3.8160 -1.3136 -5.3989 36 1 4.3692 -2.7111 -7.3482 37 1 2.7070 -2.9743 -10.0937 38 1 2.4570 -4.5159 -10.9482 39 1 1.1812 -3.8681 -9.8899 40 1 0.7139 -4.8539 -6.8587 41 1 0.1572 -3.4661 -4.9034 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067407309.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:49:47 Heat of formation + Delta-G solvation = -107.781538 kcal Electronic energy + Delta-G solvation = -23072.626304 eV Core-core repulsion = 19465.266640 eV Total energy + Delta-G solvation = -3607.359664 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.118 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.29056 -38.90018 -38.10427 -37.72177 -36.92979 -34.77044 -32.64314 -32.06645 -31.09324 -30.16870 -28.55606 -26.79944 -24.57470 -23.99829 -22.53701 -21.87933 -20.00331 -19.60437 -19.48712 -18.39859 -17.37482 -17.31509 -17.07877 -16.42150 -16.12774 -16.04952 -15.63365 -15.43669 -15.10241 -14.66555 -14.51070 -14.19776 -14.10262 -13.93338 -13.89412 -13.78893 -13.42793 -13.24837 -13.11027 -13.02787 -12.95652 -12.49744 -12.38500 -12.14740 -11.96512 -11.93631 -11.87330 -11.64427 -11.61342 -11.15933 -10.37483 -10.18248 -9.62363 -9.15961 -8.69265 -6.29475 -0.80321 -0.12459 0.21290 1.46327 1.53752 1.72914 1.94500 2.08853 2.39150 2.51722 3.02796 3.08456 3.22137 3.41585 3.64148 3.78355 3.96689 4.14537 4.15753 4.20139 4.21106 4.30202 4.35954 4.45676 4.51532 4.65090 4.67316 4.74432 4.82058 4.86637 4.94421 5.00165 5.04195 5.05716 5.17483 5.41951 5.60351 5.85158 6.08837 6.24441 6.39662 6.65276 6.74839 7.45778 8.63156 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.036165 B = 0.002227 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.047851 B =12570.811021 C =12708.674325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.191 3.809 3 H 0.035 0.965 4 C -0.596 4.596 5 H 0.016 0.984 6 C -0.020 4.020 7 N -0.935 5.935 8 Si 1.082 2.918 9 H -0.290 1.290 10 H -0.264 1.264 11 H -0.247 1.247 12 N -0.690 5.690 13 C 0.056 3.944 14 C 0.063 3.937 15 O -0.324 6.324 16 C 0.170 3.830 17 C -0.237 4.237 18 C 0.009 3.991 19 C -0.706 4.706 20 S 2.513 3.487 21 C -0.624 4.624 22 O -0.980 6.980 23 O -0.980 6.980 24 C 0.008 3.992 25 C -0.190 4.190 26 H 0.053 0.947 27 H 0.037 0.963 28 H 0.045 0.955 29 H 0.252 0.748 30 H 0.333 0.667 31 H 0.040 0.960 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.071 0.929 35 H 0.153 0.847 36 H 0.162 0.838 37 H 0.153 0.847 38 H 0.153 0.847 39 H 0.153 0.847 40 H 0.164 0.836 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.353 0.578 -32.038 32.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.081 3.919 3 H 0.052 0.948 4 C -0.634 4.634 5 H 0.034 0.966 6 C -0.218 4.218 7 N -0.571 5.571 8 Si 0.903 3.097 9 H -0.216 1.216 10 H -0.189 1.189 11 H -0.171 1.171 12 N -0.321 5.321 13 C -0.073 4.073 14 C -0.012 4.012 15 O -0.237 6.237 16 C 0.123 3.877 17 C -0.256 4.256 18 C -0.009 4.009 19 C -0.793 4.793 20 S 2.696 3.304 21 C -0.778 4.778 22 O -0.977 6.977 23 O -0.978 6.978 24 C -0.010 4.010 25 C -0.210 4.210 26 H 0.072 0.928 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.150 0.850 31 H 0.058 0.942 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.089 0.911 35 H 0.171 0.829 36 H 0.180 0.820 37 H 0.172 0.828 38 H 0.171 0.829 39 H 0.171 0.829 40 H 0.182 0.818 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.641 1.067 -30.578 30.604 hybrid contribution -0.721 -0.948 -0.337 1.238 sum -1.362 0.119 -30.916 30.946 Atomic orbital electron populations 1.22667 0.99524 1.00123 1.00513 1.19319 0.90079 0.94112 0.88355 0.94762 1.22118 1.38956 1.09476 0.92870 0.96595 1.27188 0.93090 1.09690 0.91870 1.70978 1.47470 1.05527 1.33092 0.83585 0.78887 0.70846 0.76393 1.21625 1.18875 1.17130 1.60635 1.58203 1.09688 1.03525 1.22161 1.00795 0.95466 0.88914 1.23134 0.91696 0.89139 0.97220 1.86098 1.47778 1.46402 1.43442 1.19624 0.93364 0.89523 0.85156 1.21649 0.98273 1.05626 1.00072 1.21010 0.97047 0.89361 0.93500 1.30543 1.05613 1.18173 1.24932 1.04636 0.74066 0.74853 0.76827 1.30033 1.15291 1.15921 1.16514 1.93528 1.29709 1.87234 1.87238 1.93531 1.75518 1.43153 1.85548 1.20974 0.93938 0.94743 0.91368 1.20815 1.01811 0.97702 1.00627 0.92803 0.94407 0.93637 0.93965 0.85001 0.94225 0.88283 0.88184 0.91100 0.82924 0.82040 0.82820 0.82905 0.82868 0.81839 0.83942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.06 8.90 71.98 0.64 -6.42 16 2 C 0.19 8.77 2.17 44.17 0.10 8.87 16 3 H 0.03 1.53 6.37 -2.38 -0.02 1.52 16 4 C -0.60 -34.39 9.05 25.60 0.23 -34.15 16 5 H 0.02 1.03 8.06 -2.91 -0.02 1.01 16 6 C -0.02 -1.17 5.19 84.66 0.44 -0.73 16 7 N -0.94 -59.30 13.70 21.45 0.29 -59.00 16 8 Si 1.08 49.18 26.44 68.60 1.81 50.99 16 9 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 10 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 11 H -0.25 -9.88 6.15 99.48 0.61 -9.27 16 12 N -0.69 -27.66 6.23 -495.45 -3.09 -30.75 16 13 C 0.06 1.62 5.90 86.30 0.51 2.13 16 14 C 0.06 1.47 5.08 71.98 0.37 1.83 16 15 O -0.32 -8.67 9.66 -92.45 -0.89 -9.56 16 16 C 0.17 4.04 6.69 22.51 0.15 4.19 16 17 C -0.24 -4.67 9.04 22.37 0.20 -4.46 16 18 C 0.01 0.16 9.46 22.25 0.21 0.37 16 19 C -0.71 -11.85 5.66 22.28 0.13 -11.73 16 20 S 2.51 33.80 5.80 -56.49 -0.33 33.47 16 21 C -0.62 -1.32 10.80 113.37 1.22 -0.09 16 22 O -0.98 -20.20 17.12 -127.65 -2.19 -22.38 16 23 O -0.98 -20.44 17.12 -127.65 -2.19 -22.62 16 24 C 0.01 0.15 9.46 22.25 0.21 0.36 16 25 C -0.19 -4.12 9.99 22.37 0.22 -3.90 16 26 H 0.05 1.87 7.64 -2.38 -0.02 1.85 16 27 H 0.04 1.59 8.00 -2.39 -0.02 1.57 16 28 H 0.04 1.98 5.48 -2.39 -0.01 1.97 16 29 H 0.25 16.30 8.73 -92.71 -0.81 15.49 16 30 H 0.33 13.55 7.94 -89.69 -0.71 12.84 16 31 H 0.04 1.10 7.58 -2.39 -0.02 1.08 16 32 H 0.10 2.66 8.05 -2.39 -0.02 2.65 16 33 H 0.10 1.62 7.65 -2.39 -0.02 1.61 16 34 H 0.07 1.73 7.68 -2.39 -0.02 1.71 16 35 H 0.15 2.42 6.30 -2.91 -0.02 2.40 16 36 H 0.16 2.05 7.57 -2.91 -0.02 2.03 16 37 H 0.15 -0.20 8.14 -2.39 -0.02 -0.22 16 38 H 0.15 -0.18 8.14 -2.39 -0.02 -0.20 16 39 H 0.15 -0.17 8.14 -2.39 -0.02 -0.19 16 40 H 0.16 2.22 7.56 -2.91 -0.02 2.20 16 41 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16 Total: -1.00 -82.00 350.90 -1.74 -83.74 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: 0.20 Total: 19.84 kcal Atomic # 6 Polarization: -48.36 SS G_CDS: 4.63 Total: -43.73 kcal Atomic # 7 Polarization: -86.96 SS G_CDS: -2.79 Total: -89.75 kcal Atomic # 8 Polarization: -49.30 SS G_CDS: -5.26 Total: -54.57 kcal Atomic # 14 Polarization: 49.18 SS G_CDS: 1.81 Total: 50.99 kcal Atomic # 16 Polarization: 33.80 SS G_CDS: -0.33 Total: 33.47 kcal Total: -82.00 -1.74 -83.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067407309.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.041 kcal (2) G-P(sol) polarization free energy of solvation -81.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds