Wall clock time and date at job start Fri Apr 10 2020 22:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.46900 * 111.00000 * 275.00251 * 12 2 1 14 14 C 1.53000 * 109.47300 * 179.97438 * 13 12 2 15 15 O 1.42907 * 109.46615 * 64.99983 * 14 13 12 16 16 C 1.35901 * 116.99688 * 179.97438 * 15 14 13 17 17 C 1.38736 * 120.05440 * 359.73180 * 16 15 14 18 18 C 1.38151 * 119.93857 * 179.74359 * 17 16 15 19 19 C 1.38267 * 120.05741 * 0.50272 * 18 17 16 20 20 S 1.76202 * 119.94265 * 179.74719 * 19 18 17 21 21 C 1.81399 * 104.44831 * 270.02164 * 20 19 18 22 22 O 1.42106 * 104.27322 * 26.09323 * 20 19 18 23 23 O 1.42095 * 104.27610 * 153.94923 * 20 19 18 24 24 C 1.38267 * 120.10973 * 359.77098 * 19 18 17 25 25 C 1.38143 * 120.05880 * 359.97438 * 24 19 18 26 26 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 27 27 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 28 28 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 29 29 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 30 30 H 1.00892 * 110.99877 * 38.95708 * 12 2 1 31 31 H 1.09002 * 109.47272 * 300.00084 * 13 12 2 32 32 H 1.09001 * 109.47006 * 60.00062 * 13 12 2 33 33 H 1.08993 * 109.47520 * 184.99882 * 14 13 12 34 34 H 1.08995 * 109.47055 * 305.00279 * 14 13 12 35 35 H 1.07999 * 120.02729 * 359.97438 * 17 16 15 36 36 H 1.08000 * 119.96665 * 180.23380 * 18 17 16 37 37 H 1.09010 * 109.46885 * 60.00278 * 21 20 19 38 38 H 1.09002 * 109.47018 * 179.97438 * 21 20 19 39 39 H 1.08991 * 109.47343 * 300.00097 * 21 20 19 40 40 H 1.08001 * 119.96739 * 179.97438 * 24 19 18 41 41 H 1.07994 * 120.03092 * 179.97438 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 7 2.0197 -0.6924 1.1995 13 6 2.0824 0.2227 2.3469 14 6 2.5950 -0.5329 3.5746 15 8 3.9433 -0.9493 3.3489 16 6 4.5519 -1.6382 4.3498 17 6 3.8675 -1.9031 5.5272 18 6 4.4867 -2.6082 6.5410 19 6 5.7909 -3.0408 6.3872 20 16 6.5801 -3.9341 7.6849 21 6 7.3637 -2.6542 8.7040 22 8 5.5092 -4.5467 8.3901 23 8 7.5644 -4.7167 7.0234 24 6 6.4771 -2.7731 5.2170 25 6 5.8606 -2.0730 4.1981 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 0.7088 1.1611 -3.4845 30 1 1.4496 -1.4978 1.4101 31 1 2.7588 1.0463 2.1182 32 1 1.0870 0.6164 2.5525 33 1 2.5577 0.1211 4.4456 34 1 1.9691 -1.4078 3.7501 35 1 2.8502 -1.5615 5.6494 36 1 3.9530 -2.8179 7.4562 37 1 6.6007 -1.9743 9.0834 38 1 7.8811 -3.1227 9.5412 39 1 8.0794 -2.0966 8.1001 40 1 7.4959 -3.1118 5.0995 41 1 6.3971 -1.8639 3.2845 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067407310.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:49:50 Heat of formation + Delta-G solvation = -103.985107 kcal Electronic energy + Delta-G solvation = -23011.275487 eV Core-core repulsion = 19404.080448 eV Total energy + Delta-G solvation = -3607.195039 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.118 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.20726 -38.79647 -38.07458 -37.63076 -36.90130 -34.70010 -32.39574 -31.90349 -30.91830 -30.13306 -28.27605 -27.23162 -24.53496 -23.91876 -22.56792 -22.16470 -19.96527 -19.46185 -18.50030 -18.31073 -17.29894 -17.14360 -17.03283 -16.65059 -16.38061 -15.79911 -15.70410 -15.19673 -14.96222 -14.54853 -14.45795 -14.14279 -14.00162 -13.86951 -13.84397 -13.62976 -13.34742 -13.08179 -13.01615 -12.96101 -12.81210 -12.69049 -12.34187 -12.18611 -12.14436 -11.99334 -11.85469 -11.65692 -11.61034 -11.04857 -10.49887 -10.13840 -9.54851 -8.96621 -8.11524 -6.22061 -0.77207 -0.06928 0.25968 1.41331 1.42044 1.52869 1.98816 2.17675 2.42686 2.43977 3.11302 3.16790 3.25357 3.54034 3.70124 3.82588 3.99189 4.13158 4.17095 4.19764 4.24289 4.35320 4.47459 4.53508 4.64333 4.70898 4.84540 4.89014 4.92591 4.96892 5.02300 5.07445 5.08527 5.23469 5.40072 5.66046 5.69099 5.80154 6.25734 6.37289 6.62025 6.81609 6.92794 7.47817 8.93799 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.026351 B = 0.002315 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.339609 B =12091.817190 C =12742.285606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.216 3.784 3 H 0.003 0.997 4 C -0.516 4.516 5 H 0.050 0.950 6 C 0.009 3.991 7 N -0.921 5.921 8 Si 0.958 3.042 9 H -0.278 1.278 10 H -0.271 1.271 11 H -0.281 1.281 12 N -0.688 5.688 13 C 0.058 3.942 14 C 0.066 3.934 15 O -0.313 6.313 16 C 0.169 3.831 17 C -0.238 4.238 18 C 0.011 3.989 19 C -0.708 4.708 20 S 2.515 3.485 21 C -0.625 4.625 22 O -0.979 6.979 23 O -0.981 6.981 24 C 0.009 3.991 25 C -0.193 4.193 26 H 0.031 0.969 27 H 0.061 0.939 28 H 0.032 0.968 29 H 0.261 0.739 30 H 0.331 0.669 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.097 0.903 34 H 0.075 0.925 35 H 0.155 0.845 36 H 0.164 0.836 37 H 0.153 0.847 38 H 0.153 0.847 39 H 0.152 0.848 40 H 0.162 0.838 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.978 -3.239 25.828 27.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.107 3.893 3 H 0.021 0.979 4 C -0.554 4.554 5 H 0.068 0.932 6 C -0.189 4.189 7 N -0.562 5.562 8 Si 0.784 3.216 9 H -0.204 1.204 10 H -0.196 1.196 11 H -0.207 1.207 12 N -0.319 5.319 13 C -0.072 4.072 14 C -0.008 4.008 15 O -0.225 6.225 16 C 0.122 3.878 17 C -0.257 4.257 18 C -0.008 4.008 19 C -0.795 4.795 20 S 2.698 3.302 21 C -0.779 4.779 22 O -0.976 6.976 23 O -0.978 6.978 24 C -0.009 4.009 25 C -0.213 4.213 26 H 0.050 0.950 27 H 0.080 0.920 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.148 0.852 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.115 0.885 34 H 0.093 0.907 35 H 0.173 0.827 36 H 0.181 0.819 37 H 0.172 0.828 38 H 0.171 0.829 39 H 0.170 0.830 40 H 0.180 0.820 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 10.604 -3.875 25.406 27.801 hybrid contribution -1.154 0.737 -1.342 1.917 sum 9.450 -3.138 24.063 26.042 Atomic orbital electron populations 1.22242 0.99658 0.99342 1.00377 1.18934 0.90205 0.92655 0.87494 0.97937 1.21453 1.30290 1.12406 0.91272 0.93178 1.25695 0.95495 0.95935 1.01812 1.69996 1.37977 1.24220 1.23989 0.85550 0.77988 0.78999 0.79020 1.20414 1.19596 1.20680 1.60627 1.58181 1.09488 1.03602 1.22016 0.99396 0.95631 0.90108 1.23098 0.79861 0.99468 0.98418 1.86296 1.29275 1.67636 1.39311 1.19726 0.92570 0.88323 0.87174 1.21639 1.02686 1.07078 0.94303 1.21014 0.91978 0.89008 0.98782 1.30524 1.07360 1.24096 1.17481 1.04576 0.74097 0.76669 0.74848 1.30039 1.15036 1.17515 1.15275 1.93526 1.55220 1.74839 1.74019 1.93528 1.61821 1.67795 1.74660 1.20941 1.00030 0.89945 0.90009 1.20799 0.93697 1.04675 1.02089 0.95012 0.92001 0.94933 0.92970 0.85151 0.91997 0.92250 0.88518 0.90681 0.82737 0.81901 0.82822 0.82911 0.82997 0.82016 0.84493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.33 8.94 71.98 0.64 -6.69 16 2 C 0.22 10.84 2.57 44.17 0.11 10.95 16 3 H 0.00 0.15 7.80 -2.38 -0.02 0.13 16 4 C -0.52 -29.09 8.84 25.60 0.23 -28.87 16 5 H 0.05 2.89 7.81 -2.91 -0.02 2.86 16 6 C 0.01 0.49 5.30 84.66 0.45 0.94 16 7 N -0.92 -53.22 11.32 21.45 0.24 -52.97 16 8 Si 0.96 44.66 29.54 68.60 2.03 46.69 16 9 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 10 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 12 N -0.69 -28.57 6.18 -495.44 -3.06 -31.63 16 13 C 0.06 1.87 5.87 86.30 0.51 2.38 16 14 C 0.07 1.64 5.02 71.98 0.36 2.00 16 15 O -0.31 -9.49 10.08 -92.44 -0.93 -10.42 16 16 C 0.17 4.37 6.69 22.51 0.15 4.52 16 17 C -0.24 -4.82 9.04 22.37 0.20 -4.62 16 18 C 0.01 0.19 9.46 22.26 0.21 0.40 16 19 C -0.71 -12.48 5.66 22.28 0.13 -12.35 16 20 S 2.51 35.09 5.80 -56.49 -0.33 34.76 16 21 C -0.62 -1.79 10.80 113.37 1.22 -0.57 16 22 O -0.98 -20.23 17.12 -127.65 -2.19 -22.42 16 23 O -0.98 -21.05 17.12 -127.65 -2.19 -23.23 16 24 C 0.01 0.19 9.46 22.25 0.21 0.40 16 25 C -0.19 -4.69 9.99 22.37 0.22 -4.47 16 26 H 0.03 1.26 7.45 -2.39 -0.02 1.25 16 27 H 0.06 3.27 6.07 -2.39 -0.01 3.25 16 28 H 0.03 1.45 8.13 -2.39 -0.02 1.43 16 29 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 30 H 0.33 12.83 8.47 -89.70 -0.76 12.07 16 31 H 0.06 2.18 8.06 -2.39 -0.02 2.16 16 32 H 0.06 1.73 7.44 -2.39 -0.02 1.71 16 33 H 0.10 1.72 7.65 -2.39 -0.02 1.70 16 34 H 0.08 1.66 7.68 -2.39 -0.02 1.64 16 35 H 0.16 2.42 6.30 -2.91 -0.02 2.40 16 36 H 0.16 2.05 7.57 -2.91 -0.02 2.03 16 37 H 0.15 -0.09 8.14 -2.39 -0.02 -0.11 16 38 H 0.15 -0.09 8.14 -2.39 -0.02 -0.11 16 39 H 0.15 0.00 8.14 -2.40 -0.02 -0.02 16 40 H 0.16 2.48 7.57 -2.91 -0.02 2.46 16 41 H 0.14 3.30 8.06 -2.91 -0.02 3.27 16 Total: -1.00 -77.75 354.89 -1.50 -79.25 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: 0.28 Total: 15.94 kcal Atomic # 6 Polarization: -40.62 SS G_CDS: 4.65 Total: -35.97 kcal Atomic # 7 Polarization: -81.78 SS G_CDS: -2.82 Total: -84.60 kcal Atomic # 8 Polarization: -50.77 SS G_CDS: -5.30 Total: -56.07 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Atomic # 16 Polarization: 35.09 SS G_CDS: -0.33 Total: 34.76 kcal Total: -77.75 -1.50 -79.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067407310.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.734 kcal (2) G-P(sol) polarization free energy of solvation -77.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds