Wall clock time and date at job start Fri Apr 10 2020 22:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36012 * 116.99936 * 2 1 4 4 C 1.38507 * 120.08094 * 0.02562 * 3 2 1 5 5 C 1.38285 * 120.01794 * 179.97438 * 4 3 2 6 6 C 1.38254 * 120.18247 * 0.02562 * 5 4 3 7 7 C 1.38225 * 120.15880 * 359.97438 * 6 5 4 8 8 C 1.38726 * 119.97943 * 359.97438 * 7 6 5 9 9 N 1.39969 * 120.08704 * 180.02562 * 8 7 6 10 10 C 1.46496 * 119.99991 * 84.99806 * 9 8 7 11 11 S 1.65599 * 119.99915 * 264.99795 * 9 8 7 12 12 O 1.42095 * 104.27674 * 206.06986 * 11 9 8 13 13 O 1.42103 * 104.27912 * 333.93233 * 11 9 8 14 14 C 1.81409 * 104.44757 * 90.00027 * 11 9 8 15 15 C 1.53000 * 109.46604 * 180.02562 * 14 11 9 16 16 C 1.53005 * 109.46738 * 180.02562 * 15 14 11 17 17 C 1.50699 * 109.47274 * 179.97438 * 16 15 14 18 18 H 1.08005 * 119.99750 * 0.02562 * 17 16 15 19 19 C 1.37873 * 119.99916 * 180.02562 * 17 16 15 20 20 N 1.31508 * 120.00347 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99871 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46986 * 59.99603 * 21 19 17 23 23 H 1.48502 * 109.47203 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.46792 * 300.00121 * 21 19 17 25 25 H 1.08992 * 109.47286 * 59.99128 * 1 2 3 26 26 H 1.09000 * 109.47021 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46808 * 299.99239 * 1 2 3 28 28 H 1.07999 * 119.98749 * 0.24626 * 4 3 2 29 29 H 1.07997 * 119.90788 * 179.97438 * 5 4 3 30 30 H 1.07996 * 119.91798 * 179.97438 * 6 5 4 31 31 H 1.07999 * 120.00479 * 180.02562 * 7 6 5 32 32 H 1.09001 * 109.47254 * 90.00075 * 10 9 8 33 33 H 1.09006 * 109.47147 * 209.99751 * 10 9 8 34 34 H 1.09000 * 109.47769 * 330.00154 * 10 9 8 35 35 H 1.09003 * 109.46928 * 299.99598 * 14 11 9 36 36 H 1.08997 * 109.46853 * 60.00293 * 14 11 9 37 37 H 1.09002 * 109.47556 * 299.99541 * 15 14 11 38 38 H 1.08997 * 109.47374 * 60.00492 * 15 14 11 39 39 H 1.08996 * 109.47145 * 300.00133 * 16 15 14 40 40 H 1.08998 * 109.47183 * 59.99763 * 16 15 14 41 41 H 0.97002 * 120.00120 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2937 2.3746 0.0005 5 6 1.9229 3.6060 0.0011 6 6 3.3034 3.6813 0.0005 7 6 4.0618 2.5257 0.0000 8 6 3.4376 1.2868 0.0005 9 7 4.2034 0.1152 0.0005 10 6 4.6973 -0.4371 1.2643 11 16 4.5513 -0.6466 -1.4281 12 8 4.7517 -2.0047 -1.0613 13 8 3.4887 -0.2706 -2.2935 14 6 6.1111 0.1026 -1.9725 15 6 6.5425 -0.5251 -3.2994 16 6 7.8585 0.1064 -3.7583 17 6 8.2838 -0.5123 -5.0649 18 1 7.6761 -1.2789 -5.5226 19 6 9.4487 -0.0997 -5.6761 20 7 10.1885 0.8341 -5.1192 21 14 9.9756 -0.8661 -7.2962 22 1 8.9282 -0.6261 -8.3212 23 1 11.2529 -0.2533 -7.7415 24 1 10.1642 -2.3278 -7.1141 25 1 -0.3633 0.5139 -0.8898 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8901 28 1 0.2152 2.3193 0.0050 29 1 1.3342 4.5114 0.0011 30 1 3.7903 4.6452 0.0005 31 1 5.1401 2.5874 0.0000 32 1 3.9629 -1.1342 1.6679 33 1 5.6373 -0.9606 1.0895 34 1 4.8591 0.3724 1.9761 35 1 5.9715 1.1753 -2.1068 36 1 6.8802 -0.0724 -1.2202 37 1 6.6820 -1.5979 -3.1656 38 1 5.7733 -0.3497 -4.0515 39 1 7.7195 1.1791 -3.8920 40 1 8.6275 -0.0693 -3.0061 41 1 11.0079 1.1247 -5.5494 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068896440.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:50:03 Heat of formation + Delta-G solvation = -84.117393 kcal Electronic energy + Delta-G solvation = -24284.295047 eV Core-core repulsion = 20677.961537 eV Total energy + Delta-G solvation = -3606.333510 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.118 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.43306 -37.74947 -36.83547 -35.91167 -35.57095 -34.63930 -32.16678 -30.51968 -30.06806 -27.79302 -27.46800 -26.11129 -23.74316 -22.46819 -22.31070 -20.52302 -19.22830 -18.16899 -17.54671 -16.74739 -16.65525 -16.31358 -15.75524 -15.59177 -15.42815 -14.87413 -14.48849 -14.36849 -14.17322 -14.01492 -13.34946 -13.03959 -12.60962 -12.56083 -12.39283 -12.25289 -11.93829 -11.86081 -11.79815 -11.71443 -11.63043 -11.28164 -11.22578 -11.12473 -10.88118 -10.84416 -10.40893 -9.92562 -9.57266 -9.28209 -9.14631 -8.95152 -8.38833 -8.31643 -6.03974 -4.07001 0.41081 1.06635 1.26461 2.73911 3.12330 3.33548 3.37119 3.40594 3.49552 4.09806 4.37248 4.43992 4.61778 4.63070 4.82619 4.89487 4.98137 5.07024 5.18494 5.19699 5.21835 5.30421 5.32308 5.34462 5.44935 5.51322 5.71547 5.80333 5.92800 6.03128 6.13201 6.27570 6.29455 6.44862 6.47244 6.70732 6.89234 7.28243 7.58596 7.68977 7.93997 8.34719 8.98895 9.57519 11.07245 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.020691 B = 0.003334 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.940477 B = 8396.443218 C = 8834.195746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.304 6.304 3 C 0.149 3.851 4 C -0.207 4.207 5 C -0.074 4.074 6 C -0.151 4.151 7 C -0.080 4.080 8 C 0.107 3.893 9 N -0.952 5.952 10 C 0.097 3.903 11 S 2.593 3.407 12 O -0.956 6.956 13 O -0.947 6.947 14 C -0.610 4.610 15 C -0.105 4.105 16 C 0.031 3.969 17 C -0.527 4.527 18 H 0.058 0.942 19 C 0.058 3.942 20 N -0.896 5.896 21 Si 0.894 3.106 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.276 1.276 25 H 0.058 0.942 26 H 0.100 0.900 27 H 0.054 0.946 28 H 0.132 0.868 29 H 0.127 0.873 30 H 0.130 0.870 31 H 0.137 0.863 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.021 0.979 40 H 0.021 0.979 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.742 4.952 16.125 24.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.216 6.216 3 C 0.100 3.900 4 C -0.226 4.226 5 C -0.092 4.092 6 C -0.170 4.170 7 C -0.100 4.100 8 C 0.013 3.987 9 N -0.783 5.783 10 C -0.047 4.047 11 S 2.691 3.309 12 O -0.946 6.946 13 O -0.937 6.937 14 C -0.741 4.741 15 C -0.145 4.145 16 C -0.007 4.007 17 C -0.565 4.565 18 H 0.076 0.924 19 C -0.143 4.143 20 N -0.535 5.535 21 Si 0.722 3.278 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.201 1.201 25 H 0.076 0.924 26 H 0.118 0.882 27 H 0.073 0.927 28 H 0.149 0.851 29 H 0.145 0.855 30 H 0.148 0.852 31 H 0.155 0.845 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.146 0.854 36 H 0.146 0.854 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.039 0.961 40 H 0.039 0.961 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.029 4.104 15.756 24.292 hybrid contribution 0.651 0.298 -0.715 1.012 sum -17.377 4.402 15.041 23.400 Atomic orbital electron populations 1.23098 0.78459 1.04146 1.01230 1.86168 1.21256 1.26369 1.87841 1.19342 0.91570 0.84786 0.94255 1.21174 1.00133 0.91999 1.09340 1.21018 0.94736 0.96942 0.96510 1.20977 0.93767 0.98218 1.04053 1.21349 1.00713 0.90732 0.97251 1.16560 0.86577 0.86209 1.09396 1.55259 1.64452 1.36051 1.22563 1.21527 0.99400 0.98793 0.84944 1.05820 0.77431 0.74717 0.72912 1.93557 1.87385 1.31939 1.81723 1.93563 1.51609 1.83686 1.64822 1.30609 1.20330 1.13241 1.09950 1.21503 1.02555 0.99867 0.90532 1.19058 0.89363 0.96073 0.96194 1.21223 1.07208 1.21726 1.06343 0.92416 1.25012 0.96454 0.95054 0.97808 1.69945 1.14646 1.29502 1.39375 0.86616 0.77846 0.79559 0.83777 1.20111 1.21240 1.20100 0.92355 0.88179 0.92740 0.85070 0.85467 0.85190 0.84497 0.92188 0.90559 0.91055 0.85435 0.85449 0.91620 0.91596 0.96089 0.96095 0.92849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.30 -4.14 10.24 -19.78 -0.20 -4.34 16 3 C 0.15 1.97 6.42 -39.08 -0.25 1.71 16 4 C -0.21 -2.14 9.04 -39.47 -0.36 -2.50 16 5 C -0.07 -0.67 10.04 -39.56 -0.40 -1.07 16 6 C -0.15 -1.44 10.04 -39.58 -0.40 -1.84 16 7 C -0.08 -0.89 9.97 -39.41 -0.39 -1.28 16 8 C 0.11 1.42 4.55 -83.56 -0.38 1.04 16 9 N -0.95 -13.10 2.88 -65.25 -0.19 -13.29 16 10 C 0.10 1.06 10.19 59.84 0.61 1.67 16 11 S 2.59 43.90 5.35 -107.50 -0.58 43.33 16 12 O -0.96 -18.29 17.09 -57.54 -0.98 -19.27 16 13 O -0.95 -18.60 17.01 -57.54 -0.98 -19.57 16 14 C -0.61 -10.13 6.18 37.16 0.23 -9.90 16 15 C -0.11 -2.22 5.16 -26.73 -0.14 -2.36 16 16 C 0.03 0.81 4.97 -27.88 -0.14 0.67 16 17 C -0.53 -15.05 9.11 -34.44 -0.31 -15.37 16 18 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 20 N -0.90 -26.76 13.29 55.43 0.74 -26.03 16 21 Si 0.89 21.77 29.54 -169.99 -5.02 16.74 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 25 H 0.06 0.47 7.67 -51.93 -0.40 0.07 16 26 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 28 H 0.13 1.02 6.30 -52.49 -0.33 0.69 16 29 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 30 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 31 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.76 7.79 -51.93 -0.40 0.35 16 34 H 0.07 0.60 8.05 -51.93 -0.42 0.18 16 35 H 0.13 1.92 8.14 -51.92 -0.42 1.49 16 36 H 0.13 1.85 8.14 -51.93 -0.42 1.43 16 37 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 38 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 360.46 15.07 5.43 5.43 Total: -1.00 -36.49 360.46 -8.95 -45.44 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -6.14 Total: -2.03 kcal Atomic # 6 Polarization: -25.39 SS G_CDS: -1.03 Total: -26.42 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 0.55 Total: -39.31 kcal Atomic # 8 Polarization: -41.02 SS G_CDS: -2.16 Total: -43.18 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: 43.90 SS G_CDS: -0.58 Total: 43.33 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -36.49 -8.95 -45.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068896440.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.674 kcal (2) G-P(sol) polarization free energy of solvation -36.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds