Wall clock time and date at job start Fri Apr 10 2020 22:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36012 * 116.99936 * 2 1 4 4 C 1.38507 * 120.08094 * 0.02562 * 3 2 1 5 5 C 1.38285 * 120.01794 * 179.97438 * 4 3 2 6 6 C 1.38254 * 120.18247 * 0.02562 * 5 4 3 7 7 C 1.38225 * 120.15880 * 359.97438 * 6 5 4 8 8 C 1.38726 * 119.97943 * 359.97438 * 7 6 5 9 9 N 1.39969 * 120.08704 * 180.02562 * 8 7 6 10 10 C 1.46496 * 119.99991 * 84.99806 * 9 8 7 11 11 S 1.65599 * 119.99915 * 264.99795 * 9 8 7 12 12 O 1.42095 * 104.27674 * 206.06986 * 11 9 8 13 13 O 1.42103 * 104.27912 * 333.93233 * 11 9 8 14 14 C 1.81409 * 104.44757 * 90.00027 * 11 9 8 15 15 C 1.53000 * 109.46604 * 180.02562 * 14 11 9 16 16 C 1.53005 * 109.46738 * 180.02562 * 15 14 11 17 17 C 1.50699 * 109.47274 * 179.97438 * 16 15 14 18 18 H 1.08005 * 119.99750 * 0.02562 * 17 16 15 19 19 C 1.37873 * 119.99916 * 180.02562 * 17 16 15 20 20 N 1.31508 * 120.00347 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99871 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46986 * 59.99603 * 21 19 17 23 23 H 1.48502 * 109.47203 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.46792 * 300.00121 * 21 19 17 25 25 H 1.08992 * 109.47286 * 59.99128 * 1 2 3 26 26 H 1.09000 * 109.47021 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46808 * 299.99239 * 1 2 3 28 28 H 1.07999 * 119.98749 * 0.24626 * 4 3 2 29 29 H 1.07997 * 119.90788 * 179.97438 * 5 4 3 30 30 H 1.07996 * 119.91798 * 179.97438 * 6 5 4 31 31 H 1.07999 * 120.00479 * 180.02562 * 7 6 5 32 32 H 1.09001 * 109.47254 * 90.00075 * 10 9 8 33 33 H 1.09006 * 109.47147 * 209.99751 * 10 9 8 34 34 H 1.09000 * 109.47769 * 330.00154 * 10 9 8 35 35 H 1.09003 * 109.46928 * 299.99598 * 14 11 9 36 36 H 1.08997 * 109.46853 * 60.00293 * 14 11 9 37 37 H 1.09002 * 109.47556 * 299.99541 * 15 14 11 38 38 H 1.08997 * 109.47374 * 60.00492 * 15 14 11 39 39 H 1.08996 * 109.47145 * 300.00133 * 16 15 14 40 40 H 1.08998 * 109.47183 * 59.99763 * 16 15 14 41 41 H 0.97002 * 120.00120 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2937 2.3746 0.0005 5 6 1.9229 3.6060 0.0011 6 6 3.3034 3.6813 0.0005 7 6 4.0618 2.5257 0.0000 8 6 3.4376 1.2868 0.0005 9 7 4.2034 0.1152 0.0005 10 6 4.6973 -0.4371 1.2643 11 16 4.5513 -0.6466 -1.4281 12 8 4.7517 -2.0047 -1.0613 13 8 3.4887 -0.2706 -2.2935 14 6 6.1111 0.1026 -1.9725 15 6 6.5425 -0.5251 -3.2994 16 6 7.8585 0.1064 -3.7583 17 6 8.2838 -0.5123 -5.0649 18 1 7.6761 -1.2789 -5.5226 19 6 9.4487 -0.0997 -5.6761 20 7 10.1885 0.8341 -5.1192 21 14 9.9756 -0.8661 -7.2962 22 1 8.9282 -0.6261 -8.3212 23 1 11.2529 -0.2533 -7.7415 24 1 10.1642 -2.3278 -7.1141 25 1 -0.3633 0.5139 -0.8898 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8901 28 1 0.2152 2.3193 0.0050 29 1 1.3342 4.5114 0.0011 30 1 3.7903 4.6452 0.0005 31 1 5.1401 2.5874 0.0000 32 1 3.9629 -1.1342 1.6679 33 1 5.6373 -0.9606 1.0895 34 1 4.8591 0.3724 1.9761 35 1 5.9715 1.1753 -2.1068 36 1 6.8802 -0.0724 -1.2202 37 1 6.6820 -1.5979 -3.1656 38 1 5.7733 -0.3497 -4.0515 39 1 7.7195 1.1791 -3.8920 40 1 8.6275 -0.0693 -3.0061 41 1 11.0079 1.1247 -5.5494 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068896440.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:50:03 Heat of formation + Delta-G solvation = -109.038394 kcal Electronic energy + Delta-G solvation = -24285.375703 eV Core-core repulsion = 20677.961537 eV Total energy + Delta-G solvation = -3607.414166 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.118 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.24669 -38.58847 -38.25054 -37.11517 -36.71916 -36.48377 -34.18799 -31.30004 -30.86190 -29.68436 -28.18031 -27.01864 -25.65015 -23.44738 -23.09275 -22.27158 -20.33364 -19.23637 -18.66432 -18.52162 -17.74751 -17.51240 -16.92452 -16.69123 -16.51937 -16.46846 -15.85199 -15.49461 -15.04616 -15.01739 -14.51193 -14.20875 -14.14206 -13.96123 -13.55834 -13.46132 -13.22046 -13.15936 -13.05801 -13.01351 -12.74748 -12.71225 -12.66385 -12.57550 -12.16559 -12.00694 -11.94916 -11.78662 -11.41118 -11.15474 -10.57593 -10.27022 -9.86321 -9.13982 -8.22944 -6.34250 -0.89437 0.25942 0.47301 1.39981 1.42755 1.50694 1.57062 2.36717 2.39846 2.71358 2.77673 3.10206 3.11627 3.61562 3.81769 3.88303 3.93640 4.09041 4.27853 4.34122 4.37485 4.38993 4.46560 4.53971 4.59359 4.65575 4.69678 4.76214 4.84403 4.90890 4.94438 5.03319 5.29470 5.36606 5.43278 5.53605 5.60569 5.65959 5.77909 5.88292 6.18686 6.47842 6.80355 7.34911 8.88380 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.020691 B = 0.003334 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.940477 B = 8396.443218 C = 8834.195746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.337 6.337 3 C 0.123 3.877 4 C -0.211 4.211 5 C -0.069 4.069 6 C -0.153 4.153 7 C -0.089 4.089 8 C 0.074 3.926 9 N -0.944 5.944 10 C 0.089 3.911 11 S 2.609 3.391 12 O -0.984 6.984 13 O -0.978 6.978 14 C -0.605 4.605 15 C -0.105 4.105 16 C 0.033 3.967 17 C -0.556 4.556 18 H 0.059 0.941 19 C 0.005 3.995 20 N -0.928 5.928 21 Si 0.963 3.037 22 H -0.268 1.268 23 H -0.279 1.279 24 H -0.267 1.267 25 H 0.062 0.938 26 H 0.109 0.891 27 H 0.077 0.923 28 H 0.153 0.847 29 H 0.161 0.839 30 H 0.156 0.844 31 H 0.150 0.850 32 H 0.056 0.944 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.144 0.856 36 H 0.149 0.851 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.004 0.996 40 H 0.005 0.995 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.462 6.110 16.560 25.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.250 6.250 3 C 0.074 3.926 4 C -0.230 4.230 5 C -0.087 4.087 6 C -0.171 4.171 7 C -0.109 4.109 8 C -0.020 4.020 9 N -0.776 5.776 10 C -0.054 4.054 11 S 2.708 3.292 12 O -0.974 6.974 13 O -0.968 6.968 14 C -0.736 4.736 15 C -0.144 4.144 16 C -0.005 4.005 17 C -0.593 4.593 18 H 0.077 0.923 19 C -0.194 4.194 20 N -0.568 5.568 21 Si 0.787 3.213 22 H -0.193 1.193 23 H -0.204 1.204 24 H -0.192 1.192 25 H 0.081 0.919 26 H 0.128 0.872 27 H 0.096 0.904 28 H 0.171 0.829 29 H 0.178 0.822 30 H 0.174 0.826 31 H 0.168 0.832 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.116 0.884 35 H 0.162 0.838 36 H 0.167 0.833 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.023 0.977 40 H 0.024 0.976 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.757 5.250 16.189 25.327 hybrid contribution 0.803 0.028 -0.765 1.109 sum -17.955 5.278 15.424 24.251 Atomic orbital electron populations 1.23360 0.76581 1.05318 1.02532 1.86108 1.23466 1.27269 1.88186 1.19689 0.91974 0.85534 0.95387 1.21512 1.01299 0.91621 1.08606 1.21467 0.94986 0.97675 0.94590 1.21371 0.94176 0.98759 1.02831 1.21603 1.01666 0.90523 0.97123 1.16925 0.86988 0.86415 1.11650 1.54835 1.64424 1.36452 1.21931 1.21776 0.99514 0.99837 0.84321 1.05090 0.76770 0.74112 0.73212 1.93511 1.87632 1.33925 1.82330 1.93511 1.52753 1.84026 1.66516 1.30525 1.21124 1.13903 1.08071 1.21322 1.00261 0.99905 0.92947 1.18946 0.91222 0.95221 0.95108 1.21698 1.07784 1.22150 1.07717 0.92276 1.25921 0.96431 0.95460 1.01582 1.70056 1.15093 1.30637 1.41031 0.85537 0.77688 0.78906 0.79177 1.19267 1.20444 1.19224 0.91949 0.87245 0.90433 0.82899 0.82191 0.82606 0.83242 0.92541 0.89830 0.88357 0.83790 0.83281 0.91621 0.91825 0.97723 0.97612 0.92549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.34 -9.15 10.24 -93.69 -0.96 -10.11 16 3 C 0.12 3.14 6.42 22.59 0.14 3.28 16 4 C -0.21 -3.96 9.04 22.35 0.20 -3.75 16 5 C -0.07 -1.04 10.04 22.28 0.22 -0.82 16 6 C -0.15 -2.49 10.04 22.27 0.22 -2.26 16 7 C -0.09 -1.82 9.97 22.38 0.22 -1.60 16 8 C 0.07 1.91 4.55 38.22 0.17 2.09 16 9 N -0.94 -25.53 2.88 -360.36 -1.04 -26.56 16 10 C 0.09 1.86 10.19 127.77 1.30 3.16 16 11 S 2.61 88.80 5.35 -56.49 -0.30 88.50 16 12 O -0.98 -38.13 17.09 -127.65 -2.18 -40.31 16 13 O -0.98 -39.08 17.01 -127.65 -2.17 -41.25 16 14 C -0.61 -19.92 6.18 71.98 0.44 -19.48 16 15 C -0.11 -4.50 5.16 30.60 0.16 -4.35 16 16 C 0.03 1.75 4.97 29.85 0.15 1.90 16 17 C -0.56 -32.13 9.11 25.60 0.23 -31.90 16 18 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 19 C 0.00 0.26 5.46 84.65 0.46 0.72 16 20 N -0.93 -55.89 13.29 21.44 0.28 -55.60 16 21 Si 0.96 44.51 29.54 68.60 2.03 46.53 16 22 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 23 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 24 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 25 H 0.06 0.95 7.67 -2.39 -0.02 0.93 16 26 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.08 0.88 7.66 -2.39 -0.02 0.86 16 28 H 0.15 2.02 6.30 -2.91 -0.02 2.00 16 29 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16 30 H 0.16 1.67 8.06 -2.91 -0.02 1.64 16 31 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 32 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.08 1.60 7.79 -2.38 -0.02 1.58 16 34 H 0.10 1.50 8.05 -2.39 -0.02 1.48 16 35 H 0.14 4.23 8.14 -2.39 -0.02 4.21 16 36 H 0.15 4.20 8.14 -2.39 -0.02 4.18 16 37 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 38 H 0.06 2.70 8.14 -2.39 -0.02 2.69 16 39 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 40 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 41 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -79.57 360.46 1.72 -77.85 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: 1.01 Total: 12.57 kcal Atomic # 6 Polarization: -56.66 SS G_CDS: 5.05 Total: -51.61 kcal Atomic # 7 Polarization: -81.41 SS G_CDS: -0.75 Total: -82.17 kcal Atomic # 8 Polarization: -86.36 SS G_CDS: -5.31 Total: -91.67 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Atomic # 16 Polarization: 88.80 SS G_CDS: -0.30 Total: 88.50 kcal Total: -79.57 1.72 -77.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068896440.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.186 kcal (2) G-P(sol) polarization free energy of solvation -79.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds