Wall clock time and date at job start Fri Apr 10 2020 22:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42901 * 109.47184 * 2 1 4 4 C 1.42903 * 113.99910 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.46819 * 179.97438 * 4 3 2 6 6 S 1.81403 * 109.47276 * 179.97438 * 5 4 3 7 7 O 1.42101 * 110.53978 * 68.37211 * 6 5 4 8 8 O 1.42094 * 110.54251 * 291.62906 * 6 5 4 9 9 N 1.65590 * 104.45275 * 179.97438 * 6 5 4 10 10 C 1.36937 * 120.00295 * 270.00263 * 9 6 5 11 11 H 1.08003 * 119.99683 * 347.08021 * 10 9 6 12 12 C 1.38811 * 119.99965 * 167.08749 * 10 9 6 13 13 N 1.31621 * 120.00173 * 327.61663 * 12 10 9 14 14 Si 1.86804 * 119.99919 * 147.62371 * 12 10 9 15 15 H 1.48502 * 109.47242 * 89.99864 * 14 12 10 16 16 H 1.48500 * 109.47062 * 209.99523 * 14 12 10 17 17 H 1.48499 * 109.47129 * 329.99728 * 14 12 10 18 18 C 1.46504 * 120.00143 * 90.00439 * 9 6 5 19 19 C 1.50694 * 109.47656 * 115.32450 * 18 9 6 20 20 C 1.38233 * 120.00144 * 97.65803 * 19 18 9 21 21 C 1.38235 * 120.00217 * 179.97438 * 20 19 18 22 22 C 1.38236 * 119.99786 * 359.97438 * 21 20 19 23 23 C 1.38230 * 120.00030 * 0.27956 * 22 21 20 24 24 C 1.38236 * 120.00099 * 359.50806 * 23 22 21 25 25 H 1.08992 * 109.47193 * 300.00723 * 1 2 3 26 26 H 1.09000 * 109.46551 * 60.00599 * 1 2 3 27 27 H 1.09000 * 109.46801 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47694 * 239.99113 * 2 1 3 29 29 H 1.09006 * 109.46940 * 119.99357 * 2 1 3 30 30 H 1.08996 * 109.47620 * 59.99404 * 4 3 2 31 31 H 1.08999 * 109.46951 * 299.99257 * 4 3 2 32 32 H 1.09004 * 109.47740 * 59.99504 * 5 4 3 33 33 H 1.09005 * 109.47483 * 299.99427 * 5 4 3 34 34 H 0.96998 * 120.00080 * 179.97438 * 13 12 10 35 35 H 1.09010 * 109.46908 * 355.32163 * 18 9 6 36 36 H 1.09002 * 109.47079 * 235.33040 * 18 9 6 37 37 H 1.08002 * 120.00078 * 359.97438 * 20 19 18 38 38 H 1.07999 * 119.99857 * 180.02562 * 21 20 19 39 39 H 1.08004 * 119.99625 * 179.97438 * 22 21 20 40 40 H 1.08001 * 120.00090 * 179.72309 * 23 22 21 41 41 H 1.08000 * 120.00142 * 180.27294 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8254 2.9383 -0.0012 6 16 5.6338 3.0816 -0.0012 7 8 6.1696 2.6316 -1.2379 8 8 6.1695 2.6326 1.2360 9 7 5.9190 4.7128 -0.0025 10 6 6.0371 5.3863 -1.1890 11 1 6.1536 4.8377 -2.1120 12 6 6.0071 6.7740 -1.2053 13 7 5.2785 7.4269 -0.3247 14 14 7.0005 7.7148 -2.4771 15 1 6.1731 7.9302 -3.6912 16 1 7.4065 9.0281 -1.9154 17 1 8.2117 6.9340 -2.8356 18 6 6.0453 5.4354 1.2656 19 6 7.4442 5.9802 1.3964 20 6 7.7081 7.2949 1.0609 21 6 8.9913 7.7948 1.1814 22 6 10.0104 6.9800 1.6379 23 6 9.7475 5.6638 1.9684 24 6 8.4635 5.1651 1.8521 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8898 29 1 1.8933 -0.5138 0.8901 30 1 3.8334 0.9766 -0.8907 31 1 3.8340 0.9765 0.8892 32 1 3.4229 3.4222 0.8888 33 1 3.4224 3.4216 -0.8912 34 1 5.2579 8.3966 -0.3359 35 1 5.8411 4.7557 2.0930 36 1 5.3312 6.2587 1.2872 37 1 6.9119 7.9317 0.7046 38 1 9.1974 8.8221 0.9196 39 1 11.0130 7.3705 1.7317 40 1 10.5446 5.0259 2.3209 41 1 8.2572 4.1380 2.1146 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068897117.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:50:07 Heat of formation + Delta-G solvation = -77.521121 kcal Electronic energy + Delta-G solvation = -24681.016419 eV Core-core repulsion = 21074.968945 eV Total energy + Delta-G solvation = -3606.047474 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.118 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -38.69721 -37.84606 -35.87205 -35.76290 -34.56808 -32.21526 -32.08440 -30.58301 -30.03871 -29.72016 -26.06880 -23.99292 -22.77816 -22.64215 -21.79982 -20.55571 -18.44858 -17.31227 -17.05206 -16.22945 -16.16716 -16.03017 -15.11325 -14.84482 -14.63044 -14.43163 -14.24096 -14.06221 -13.82380 -13.34401 -12.81616 -12.74440 -12.48535 -12.20753 -12.01449 -11.79483 -11.68593 -11.44280 -11.20729 -10.98800 -10.95628 -10.95264 -10.88046 -10.79133 -10.67483 -10.44223 -10.14842 -10.07081 -9.75193 -9.51569 -9.44509 -8.24168 -8.06486 -7.93650 -6.72245 -4.02688 1.39808 2.07967 2.12984 3.01852 3.10743 3.23371 3.77038 3.90441 4.18096 4.52404 4.60149 5.02564 5.05777 5.19866 5.21461 5.34359 5.43761 5.51297 5.53948 5.60001 5.60705 5.65751 5.67160 5.87341 5.92995 6.04628 6.06168 6.23439 6.29844 6.35962 6.50113 6.64583 6.77974 6.87289 7.00825 7.14612 7.19320 7.24479 7.38222 7.58261 7.76526 8.12322 8.52321 8.94805 10.15846 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.017999 B = 0.004477 C = 0.003950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.300571 B = 6252.568727 C = 7087.281646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.049 3.951 3 O -0.385 6.385 4 C 0.083 3.917 5 C -0.663 4.663 6 S 2.463 3.537 7 O -0.981 6.981 8 O -0.997 6.997 9 N -0.789 5.789 10 C -0.225 4.225 11 H 0.122 0.878 12 C 0.040 3.960 13 N -0.818 5.818 14 Si 0.913 3.087 15 H -0.272 1.272 16 H -0.273 1.273 17 H -0.260 1.260 18 C 0.141 3.859 19 C -0.056 4.056 20 C -0.102 4.102 21 C -0.140 4.140 22 C -0.132 4.132 23 C -0.134 4.134 24 C -0.112 4.112 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.047 0.953 29 H 0.046 0.954 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.112 0.888 33 H 0.118 0.882 34 H 0.278 0.722 35 H 0.071 0.929 36 H 0.116 0.884 37 H 0.143 0.857 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.112 0.888 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.349 -2.140 2.546 3.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.028 4.028 3 O -0.304 6.304 4 C 0.005 3.995 5 C -0.779 4.779 6 S 2.563 3.437 7 O -0.971 6.971 8 O -0.987 6.987 9 N -0.611 5.611 10 C -0.374 4.374 11 H 0.139 0.861 12 C -0.173 4.173 13 N -0.459 5.459 14 Si 0.737 3.263 15 H -0.198 1.198 16 H -0.197 1.197 17 H -0.184 1.184 18 C 0.016 3.984 19 C -0.058 4.058 20 C -0.121 4.121 21 C -0.158 4.158 22 C -0.151 4.151 23 C -0.152 4.152 24 C -0.130 4.130 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.130 0.870 33 H 0.137 0.863 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.134 0.866 37 H 0.161 0.839 38 H 0.128 0.872 39 H 0.127 0.873 40 H 0.130 0.870 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.069 -2.846 2.749 4.098 hybrid contribution -0.206 0.451 -0.580 0.763 sum -1.275 -2.394 2.168 3.473 Atomic orbital electron populations 1.21731 0.93945 1.01898 1.03120 1.22483 0.95545 0.84736 0.99995 1.87995 1.21448 1.25609 1.95360 1.22094 0.81755 0.95671 0.99934 1.31612 1.36779 0.99883 1.09658 1.14691 0.78901 0.76698 0.73398 1.93355 1.77248 1.81635 1.44860 1.93334 1.78005 1.81799 1.45547 1.54728 1.69849 1.27144 1.09410 1.20059 1.39326 0.90009 0.88024 0.86099 1.25463 0.96532 0.97279 0.97997 1.70059 1.31672 1.09516 1.34642 0.86116 0.81051 0.79025 0.80124 1.19774 1.19746 1.18422 1.20608 0.94732 0.98418 0.84639 1.20034 0.96064 0.93515 0.96195 1.21891 0.97086 0.96377 0.96750 1.21119 0.93836 0.99254 1.01617 1.20971 0.98406 0.94450 1.01259 1.20988 0.96617 0.95558 1.02075 1.21289 0.92718 0.99910 0.99103 0.91914 0.91874 0.91344 0.93498 0.93543 0.92999 0.93098 0.86970 0.86322 0.91079 0.91122 0.86614 0.83930 0.87241 0.87293 0.87040 0.85849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 10.28 37.16 0.38 -1.25 16 2 C 0.05 0.66 6.66 37.16 0.25 0.91 16 3 O -0.38 -6.82 10.34 -35.23 -0.36 -7.19 16 4 C 0.08 1.52 5.95 37.16 0.22 1.74 16 5 C -0.66 -13.20 6.55 37.16 0.24 -12.96 16 6 S 2.46 55.42 5.36 -107.50 -0.58 54.84 16 7 O -0.98 -24.73 16.75 -57.54 -0.96 -25.69 16 8 O -1.00 -23.56 16.63 -57.54 -0.96 -24.52 16 9 N -0.79 -18.11 2.97 -61.08 -0.18 -18.29 16 10 C -0.22 -5.35 9.05 -15.06 -0.14 -5.48 16 11 H 0.12 2.93 7.20 -52.48 -0.38 2.55 16 12 C 0.04 0.90 3.17 -17.43 -0.06 0.84 16 13 N -0.82 -17.89 8.71 55.49 0.48 -17.41 16 14 Si 0.91 18.19 28.94 -169.99 -4.92 13.27 16 15 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 16 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 17 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 18 C 0.14 3.04 5.24 -5.19 -0.03 3.01 16 19 C -0.06 -1.17 4.96 -104.63 -0.52 -1.69 16 20 C -0.10 -2.03 7.62 -39.58 -0.30 -2.33 16 21 C -0.14 -2.48 10.05 -39.58 -0.40 -2.87 16 22 C -0.13 -2.20 10.05 -39.58 -0.40 -2.60 16 23 C -0.13 -2.35 10.05 -39.59 -0.40 -2.75 16 24 C -0.11 -2.23 9.73 -39.58 -0.39 -2.61 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.11 2.15 8.14 -51.92 -0.42 1.73 16 33 H 0.12 2.38 8.14 -51.92 -0.42 1.96 16 34 H 0.28 5.63 7.98 -40.82 -0.33 5.31 16 35 H 0.07 1.44 6.96 -51.92 -0.36 1.08 16 36 H 0.12 2.52 5.61 -51.93 -0.29 2.23 16 37 H 0.14 2.87 4.70 -52.49 -0.25 2.63 16 38 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 39 H 0.11 1.48 8.06 -52.48 -0.42 1.06 16 40 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 41 H 0.12 2.50 8.06 -52.49 -0.42 2.08 16 LS Contribution 348.32 15.07 5.25 5.25 Total: -1.00 -27.87 348.32 -9.65 -37.52 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -5.89 Total: 10.24 kcal Atomic # 6 Polarization: -26.51 SS G_CDS: -1.52 Total: -28.03 kcal Atomic # 7 Polarization: -36.00 SS G_CDS: 0.30 Total: -35.70 kcal Atomic # 8 Polarization: -55.11 SS G_CDS: -2.28 Total: -57.40 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -4.92 Total: 13.27 kcal Atomic # 16 Polarization: 55.42 SS G_CDS: -0.58 Total: 54.84 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -27.87 -9.65 -37.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068897117.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.004 kcal (2) G-P(sol) polarization free energy of solvation -27.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds