Wall clock time and date at job start Fri Apr 10 2020 22:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42901 * 109.47184 * 2 1 4 4 C 1.42903 * 113.99910 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.46819 * 179.97438 * 4 3 2 6 6 S 1.81403 * 109.47276 * 179.97438 * 5 4 3 7 7 O 1.42101 * 110.53978 * 68.37211 * 6 5 4 8 8 O 1.42094 * 110.54251 * 291.62906 * 6 5 4 9 9 N 1.65590 * 104.45275 * 179.97438 * 6 5 4 10 10 C 1.36937 * 120.00295 * 270.00263 * 9 6 5 11 11 H 1.08003 * 119.99683 * 347.08021 * 10 9 6 12 12 C 1.38811 * 119.99965 * 167.08749 * 10 9 6 13 13 N 1.31621 * 120.00173 * 327.61663 * 12 10 9 14 14 Si 1.86804 * 119.99919 * 147.62371 * 12 10 9 15 15 H 1.48502 * 109.47242 * 89.99864 * 14 12 10 16 16 H 1.48500 * 109.47062 * 209.99523 * 14 12 10 17 17 H 1.48499 * 109.47129 * 329.99728 * 14 12 10 18 18 C 1.46504 * 120.00143 * 90.00439 * 9 6 5 19 19 C 1.50694 * 109.47656 * 115.32450 * 18 9 6 20 20 C 1.38233 * 120.00144 * 97.65803 * 19 18 9 21 21 C 1.38235 * 120.00217 * 179.97438 * 20 19 18 22 22 C 1.38236 * 119.99786 * 359.97438 * 21 20 19 23 23 C 1.38230 * 120.00030 * 0.27956 * 22 21 20 24 24 C 1.38236 * 120.00099 * 359.50806 * 23 22 21 25 25 H 1.08992 * 109.47193 * 300.00723 * 1 2 3 26 26 H 1.09000 * 109.46551 * 60.00599 * 1 2 3 27 27 H 1.09000 * 109.46801 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47694 * 239.99113 * 2 1 3 29 29 H 1.09006 * 109.46940 * 119.99357 * 2 1 3 30 30 H 1.08996 * 109.47620 * 59.99404 * 4 3 2 31 31 H 1.08999 * 109.46951 * 299.99257 * 4 3 2 32 32 H 1.09004 * 109.47740 * 59.99504 * 5 4 3 33 33 H 1.09005 * 109.47483 * 299.99427 * 5 4 3 34 34 H 0.96998 * 120.00080 * 179.97438 * 13 12 10 35 35 H 1.09010 * 109.46908 * 355.32163 * 18 9 6 36 36 H 1.09002 * 109.47079 * 235.33040 * 18 9 6 37 37 H 1.08002 * 120.00078 * 359.97438 * 20 19 18 38 38 H 1.07999 * 119.99857 * 180.02562 * 21 20 19 39 39 H 1.08004 * 119.99625 * 179.97438 * 22 21 20 40 40 H 1.08001 * 120.00090 * 179.72309 * 23 22 21 41 41 H 1.08000 * 120.00142 * 180.27294 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8254 2.9383 -0.0012 6 16 5.6338 3.0816 -0.0012 7 8 6.1696 2.6316 -1.2379 8 8 6.1695 2.6326 1.2360 9 7 5.9190 4.7128 -0.0025 10 6 6.0371 5.3863 -1.1890 11 1 6.1536 4.8377 -2.1120 12 6 6.0071 6.7740 -1.2053 13 7 5.2785 7.4269 -0.3247 14 14 7.0005 7.7148 -2.4771 15 1 6.1731 7.9302 -3.6912 16 1 7.4065 9.0281 -1.9154 17 1 8.2117 6.9340 -2.8356 18 6 6.0453 5.4354 1.2656 19 6 7.4442 5.9802 1.3964 20 6 7.7081 7.2949 1.0609 21 6 8.9913 7.7948 1.1814 22 6 10.0104 6.9800 1.6379 23 6 9.7475 5.6638 1.9684 24 6 8.4635 5.1651 1.8521 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8898 29 1 1.8933 -0.5138 0.8901 30 1 3.8334 0.9766 -0.8907 31 1 3.8340 0.9765 0.8892 32 1 3.4229 3.4222 0.8888 33 1 3.4224 3.4216 -0.8912 34 1 5.2579 8.3966 -0.3359 35 1 5.8411 4.7557 2.0930 36 1 5.3312 6.2587 1.2872 37 1 6.9119 7.9317 0.7046 38 1 9.1974 8.8221 0.9196 39 1 11.0130 7.3705 1.7317 40 1 10.5446 5.0259 2.3209 41 1 8.2572 4.1380 2.1146 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068897117.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:50:06 Heat of formation + Delta-G solvation = -94.164313 kcal Electronic energy + Delta-G solvation = -24681.738122 eV Core-core repulsion = 21074.968945 eV Total energy + Delta-G solvation = -3606.769177 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.118 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.17238 -39.14520 -37.66092 -37.50609 -36.47311 -33.79437 -33.46311 -32.09765 -31.47921 -31.00016 -27.72182 -25.65469 -24.19189 -23.76703 -23.23225 -22.04554 -20.20595 -19.04246 -18.68040 -17.76037 -17.50627 -17.46452 -16.77969 -16.48877 -16.27880 -15.89911 -15.71722 -15.42013 -15.25279 -14.92602 -14.32393 -14.17874 -13.84235 -13.39213 -13.33104 -13.29192 -13.16808 -12.98931 -12.88733 -12.74157 -12.64162 -12.57337 -12.21682 -12.18763 -12.15346 -12.08858 -11.75083 -11.63885 -11.49752 -11.20094 -10.71965 -9.78577 -9.60019 -9.44292 -8.42065 -5.80550 -0.35542 0.63103 0.69151 1.43185 1.50088 1.62456 2.12680 2.42707 2.67456 2.81274 3.11944 3.40350 3.56355 3.79408 3.91569 4.09182 4.11235 4.14046 4.21590 4.28385 4.31627 4.40852 4.44116 4.49872 4.63265 4.74376 4.83063 4.89596 4.93133 4.95925 5.13535 5.19054 5.20484 5.31490 5.39858 5.57754 5.73071 5.76839 6.06470 6.11344 6.32727 6.37398 6.77089 7.20021 8.47865 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.017999 B = 0.004477 C = 0.003950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.300571 B = 6252.568727 C = 7087.281646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.035 3.965 3 O -0.405 6.405 4 C 0.078 3.922 5 C -0.654 4.654 6 S 2.475 3.525 7 O -1.012 7.012 8 O -1.012 7.012 9 N -0.797 5.797 10 C -0.260 4.260 11 H 0.106 0.894 12 C 0.027 3.973 13 N -0.824 5.824 14 Si 0.952 3.048 15 H -0.267 1.267 16 H -0.254 1.254 17 H -0.275 1.275 18 C 0.142 3.858 19 C -0.079 4.079 20 C -0.118 4.118 21 C -0.141 4.141 22 C -0.125 4.125 23 C -0.134 4.134 24 C -0.134 4.134 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.098 0.902 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.118 0.882 33 H 0.115 0.885 34 H 0.286 0.714 35 H 0.071 0.929 36 H 0.110 0.890 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.148 0.852 40 H 0.139 0.861 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.688 -1.440 2.802 3.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.042 4.042 3 O -0.325 6.325 4 C 0.000 4.000 5 C -0.773 4.773 6 S 2.578 3.422 7 O -1.002 7.002 8 O -1.001 7.001 9 N -0.619 5.619 10 C -0.408 4.408 11 H 0.123 0.877 12 C -0.186 4.186 13 N -0.464 5.464 14 Si 0.775 3.225 15 H -0.192 1.192 16 H -0.177 1.177 17 H -0.200 1.200 18 C 0.017 3.983 19 C -0.081 4.081 20 C -0.137 4.137 21 C -0.159 4.159 22 C -0.143 4.143 23 C -0.152 4.152 24 C -0.153 4.153 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.117 0.883 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.137 0.863 33 H 0.133 0.867 34 H 0.098 0.902 35 H 0.089 0.911 36 H 0.127 0.873 37 H 0.154 0.846 38 H 0.155 0.845 39 H 0.166 0.834 40 H 0.157 0.843 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.399 -2.119 3.015 3.707 hybrid contribution -0.463 0.177 -0.607 0.784 sum -0.862 -1.942 2.408 3.211 Atomic orbital electron populations 1.21764 0.92013 1.03776 1.02770 1.22868 0.97187 0.82906 1.01190 1.87952 1.20507 1.28471 1.95548 1.22087 0.82808 0.94299 1.00775 1.31356 1.34491 1.01654 1.09815 1.14030 0.79454 0.76357 0.72386 1.93309 1.78510 1.82241 1.46092 1.93306 1.78883 1.82134 1.45815 1.54545 1.70643 1.26999 1.09724 1.20016 1.42141 0.90828 0.87857 0.87655 1.25873 0.96459 0.97044 0.99179 1.70057 1.31318 1.10207 1.34780 0.85553 0.79447 0.78629 0.78907 1.19229 1.17739 1.19995 1.20615 0.95606 0.98033 0.84021 1.20065 0.95817 0.94431 0.97790 1.21897 0.98208 0.95885 0.97724 1.21473 0.93039 1.00721 1.00689 1.21402 0.99934 0.93696 0.99291 1.21338 0.96118 0.96601 1.01116 1.21329 0.94041 0.99431 1.00462 0.92185 0.92310 0.88345 0.92430 0.92234 0.92504 0.92038 0.86331 0.86682 0.90174 0.91087 0.87274 0.84604 0.84547 0.83385 0.84269 0.87253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 10.28 71.98 0.74 -2.18 16 2 C 0.03 0.88 6.66 71.98 0.48 1.36 16 3 O -0.40 -14.09 10.34 -148.98 -1.54 -15.63 16 4 C 0.08 2.85 5.95 71.98 0.43 3.28 16 5 C -0.65 -26.39 6.55 71.98 0.47 -25.92 16 6 S 2.48 114.49 5.36 -56.49 -0.30 114.19 16 7 O -1.01 -52.58 16.75 -127.65 -2.14 -54.72 16 8 O -1.01 -48.92 16.63 -127.65 -2.12 -51.04 16 9 N -0.80 -37.66 2.97 -347.16 -1.03 -38.69 16 10 C -0.26 -12.69 9.05 84.03 0.76 -11.93 16 11 H 0.11 5.34 7.20 -2.91 -0.02 5.32 16 12 C 0.03 1.22 3.17 84.86 0.27 1.49 16 13 N -0.82 -35.99 8.71 21.65 0.19 -35.80 16 14 Si 0.95 36.54 28.94 68.60 1.99 38.52 16 15 H -0.27 -9.97 7.11 99.48 0.71 -9.27 16 16 H -0.25 -8.89 7.11 99.48 0.71 -8.19 16 17 H -0.28 -11.19 7.11 99.48 0.71 -10.48 16 18 C 0.14 6.29 5.24 85.63 0.45 6.74 16 19 C -0.08 -3.32 4.96 -19.87 -0.10 -3.42 16 20 C -0.12 -4.60 7.62 22.27 0.17 -4.44 16 21 C -0.14 -4.62 10.05 22.27 0.22 -4.39 16 22 C -0.13 -3.74 10.05 22.27 0.22 -3.51 16 23 C -0.13 -4.41 10.05 22.27 0.22 -4.19 16 24 C -0.13 -5.35 9.73 22.27 0.22 -5.14 16 25 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 30 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.12 4.60 8.14 -2.39 -0.02 4.58 16 33 H 0.11 4.73 8.14 -2.39 -0.02 4.71 16 34 H 0.29 11.41 7.98 -92.71 -0.74 10.67 16 35 H 0.07 3.01 6.96 -2.38 -0.02 3.00 16 36 H 0.11 4.90 5.61 -2.39 -0.01 4.88 16 37 H 0.14 5.39 4.70 -2.91 -0.01 5.37 16 38 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 39 H 0.15 3.27 8.06 -2.91 -0.02 3.24 16 40 H 0.14 3.72 8.06 -2.91 -0.02 3.70 16 41 H 0.11 4.57 8.06 -2.91 -0.02 4.55 16 Total: -1.00 -59.93 348.32 0.64 -59.29 By element: Atomic # 1 Polarization: 35.11 SS G_CDS: 1.05 Total: 36.15 kcal Atomic # 6 Polarization: -56.82 SS G_CDS: 4.56 Total: -52.26 kcal Atomic # 7 Polarization: -73.65 SS G_CDS: -0.84 Total: -74.50 kcal Atomic # 8 Polarization: -115.59 SS G_CDS: -5.80 Total: -121.39 kcal Atomic # 14 Polarization: 36.54 SS G_CDS: 1.99 Total: 38.52 kcal Atomic # 16 Polarization: 114.49 SS G_CDS: -0.30 Total: 114.19 kcal Total: -59.93 0.64 -59.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068897117.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.875 kcal (2) G-P(sol) polarization free energy of solvation -59.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds