Wall clock time and date at job start Fri Apr 10 2020 22:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46904 * 109.47301 * 2 1 4 4 C 1.46889 * 110.99961 * 298.80627 * 3 2 1 5 5 C 1.53002 * 109.47374 * 288.37653 * 4 3 2 6 6 C 1.53001 * 109.47061 * 180.32183 * 5 4 3 7 7 S 1.81002 * 109.46848 * 180.02562 * 6 5 4 8 8 C 1.76197 * 99.99905 * 179.97438 * 7 6 5 9 9 H 1.08001 * 120.00255 * 0.02562 * 8 7 6 10 10 C 1.38792 * 120.00293 * 179.97438 * 8 7 6 11 11 N 1.31631 * 119.99985 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 120.00304 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47300 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47255 * 120.00213 * 12 10 8 15 15 H 1.48503 * 109.47137 * 240.00006 * 12 10 8 16 16 C 1.46899 * 110.99576 * 62.76340 * 3 2 1 17 17 C 1.50701 * 109.47364 * 66.04929 * 16 3 2 18 18 C 1.38271 * 119.98871 * 270.27179 * 17 16 3 19 19 C 1.38222 * 120.02423 * 180.27774 * 18 17 16 20 20 C 1.38233 * 120.00823 * 359.44836 * 19 18 17 21 21 C 1.38323 * 119.99245 * 0.27673 * 20 19 18 22 22 Cl 1.73605 * 120.01373 * 179.97438 * 21 20 19 23 23 C 1.38190 * 119.99794 * 90.00084 * 17 16 3 24 24 H 1.08994 * 109.47294 * 184.00793 * 1 2 3 25 25 H 1.08995 * 109.47182 * 304.01951 * 1 2 3 26 26 H 1.09006 * 109.46978 * 64.01327 * 1 2 3 27 27 H 1.09004 * 109.47586 * 240.00048 * 2 1 3 28 28 H 1.09001 * 109.46897 * 120.00344 * 2 1 3 29 29 H 1.09001 * 109.47517 * 48.37880 * 4 3 2 30 30 H 1.09009 * 109.47213 * 168.37613 * 4 3 2 31 31 H 1.08995 * 109.46905 * 300.31479 * 5 4 3 32 32 H 1.08995 * 109.46989 * 60.31788 * 5 4 3 33 33 H 1.09007 * 109.46929 * 299.99780 * 6 5 4 34 34 H 1.08995 * 109.47541 * 59.99943 * 6 5 4 35 35 H 0.97008 * 120.00277 * 180.02562 * 11 10 8 36 36 H 1.08999 * 109.47159 * 306.04016 * 16 3 2 37 37 H 1.09007 * 109.46886 * 186.04344 * 16 3 2 38 38 H 1.08000 * 119.98566 * 0.02562 * 18 17 16 39 39 H 1.07991 * 119.98982 * 179.72442 * 19 18 17 40 40 H 1.08007 * 120.00224 * 180.25250 * 20 19 18 41 41 H 1.08004 * 120.00466 * 0.02562 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5722 2.1016 -1.2016 5 6 2.3321 1.5764 -2.4213 6 6 1.8717 2.3284 -3.6717 7 16 2.7703 1.7066 -5.1147 8 6 2.0633 2.7162 -6.3738 9 1 1.3092 3.4468 -6.1203 10 6 2.4761 2.5736 -7.6912 11 7 3.3954 1.6836 -8.0001 12 14 1.7270 3.6445 -9.0260 13 1 0.7231 4.5575 -8.4229 14 1 2.7957 4.4439 -9.6771 15 1 1.0663 2.7830 -10.0392 16 6 1.6034 2.0905 1.2194 17 6 2.2808 1.4707 2.4144 18 6 1.6767 0.4234 3.0853 19 6 2.2946 -0.1418 4.1849 20 6 3.5223 0.3323 4.6076 21 6 4.1298 1.3763 3.9335 22 17 5.6714 1.9726 4.4644 23 6 3.5081 1.9455 2.8363 24 1 -0.3633 -1.0251 0.0718 25 1 -0.3633 0.5749 0.8517 26 1 -0.3633 0.4503 -0.9238 27 1 1.8934 -0.5138 -0.8900 28 1 1.8932 -0.5139 0.8900 29 1 0.5033 1.9418 -1.3431 30 1 1.7676 3.1674 -1.0830 31 1 3.4014 1.7312 -2.2775 32 1 2.1322 0.5119 -2.5433 33 1 0.8023 2.1737 -3.8156 34 1 2.0716 3.3929 -3.5498 35 1 3.6842 1.5841 -8.9208 36 1 0.5222 2.0121 1.3333 37 1 1.8858 3.1408 1.1459 38 1 0.7197 0.0495 2.7523 39 1 1.8202 -0.9568 4.7111 40 1 4.0070 -0.1121 5.4645 41 1 3.9817 2.7610 2.3098 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074981785.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:50:12 Heat of formation + Delta-G solvation = -11.282557 kcal Electronic energy + Delta-G solvation = -20523.989559 eV Core-core repulsion = 17361.523569 eV Total energy + Delta-G solvation = -3162.465990 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 313.096 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.72960 -38.97829 -37.36027 -34.71909 -34.53708 -32.75880 -31.60796 -30.71892 -27.99387 -27.33966 -25.89040 -23.85028 -23.52908 -22.11433 -20.74204 -19.54714 -17.83202 -17.26764 -17.04625 -16.89642 -16.56041 -16.24967 -15.85803 -15.57741 -15.11808 -14.72620 -14.55719 -14.40087 -14.29792 -13.61554 -13.48819 -13.18478 -13.16776 -13.02027 -12.90398 -12.83422 -12.52510 -12.37399 -12.27604 -12.17821 -12.16568 -11.88313 -11.72987 -11.42591 -11.27307 -11.14290 -10.30121 -9.86479 -9.64620 -9.15715 -8.66063 -8.37055 -6.13200 0.19915 0.33418 1.18962 1.31663 1.38344 1.49620 1.75902 2.28681 2.59017 2.97115 3.14900 3.34894 3.71124 3.90954 3.96611 4.10082 4.14643 4.19526 4.30711 4.34907 4.35672 4.44773 4.51184 4.56590 4.57599 4.68847 4.74526 4.80272 4.86737 4.98812 5.05541 5.13203 5.22604 5.26936 5.30131 5.38677 5.40215 5.46336 5.56612 5.87566 6.12067 6.17186 6.18705 7.05186 8.72623 Molecular weight = 313.10amu Principal moments of inertia in cm(-1) A = 0.022675 B = 0.002256 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.549642 B =12409.535778 C =13135.678510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.043 3.957 3 N -0.540 5.540 4 C 0.067 3.933 5 C -0.079 4.079 6 C -0.085 4.085 7 S -0.202 6.202 8 C -0.535 4.535 9 H 0.073 0.927 10 C 0.013 3.987 11 N -0.908 5.908 12 Si 0.995 3.005 13 H -0.262 1.262 14 H -0.272 1.272 15 H -0.271 1.271 16 C 0.089 3.911 17 C -0.068 4.068 18 C -0.111 4.111 19 C -0.106 4.106 20 C -0.118 4.118 21 C -0.049 4.049 22 Cl -0.080 7.080 23 C -0.104 4.104 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.049 0.951 27 H 0.064 0.936 28 H 0.083 0.917 29 H 0.050 0.950 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.271 0.729 36 H 0.064 0.936 37 H 0.086 0.914 38 H 0.142 0.858 39 H 0.158 0.842 40 H 0.145 0.855 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.365 -2.260 27.810 28.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.085 4.085 3 N -0.264 5.264 4 C -0.063 4.063 5 C -0.118 4.118 6 C -0.235 4.235 7 S 0.027 5.973 8 C -0.683 4.683 9 H 0.091 0.909 10 C -0.191 4.191 11 N -0.545 5.545 12 Si 0.817 3.183 13 H -0.186 1.186 14 H -0.197 1.197 15 H -0.197 1.197 16 C -0.038 4.038 17 C -0.068 4.068 18 C -0.129 4.129 19 C -0.124 4.124 20 C -0.137 4.137 21 C -0.075 4.075 22 Cl -0.052 7.052 23 C -0.124 4.124 24 H 0.090 0.910 25 H 0.087 0.913 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.102 0.898 29 H 0.068 0.932 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.104 0.896 38 H 0.160 0.840 39 H 0.175 0.825 40 H 0.163 0.837 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.806 -3.097 27.620 28.052 hybrid contribution -1.548 1.518 -1.016 2.394 sum -5.353 -1.579 26.603 27.183 Atomic orbital electron populations 1.22385 0.97137 1.03195 1.02032 1.22245 0.93782 0.89692 1.02770 1.62136 1.60232 1.02775 1.01209 1.22050 0.97498 0.98228 0.88478 1.21106 1.00384 0.99170 0.91141 1.23145 1.01526 1.01996 0.96798 1.84695 1.56909 1.54179 1.01565 1.23063 1.27026 1.23808 0.94427 0.90907 1.26089 0.95303 0.97107 1.00642 1.70171 1.29771 1.34486 1.20055 0.84956 0.78273 0.77892 0.77181 1.18587 1.19712 1.19664 1.21123 0.98079 0.97911 0.86653 1.19754 0.94246 0.96634 0.96204 1.21440 1.00907 0.95216 0.95371 1.21405 0.94248 1.00234 0.96505 1.21311 0.96217 0.95532 1.00639 1.21088 0.88903 0.99150 0.98375 1.98370 1.29078 1.87818 1.89902 1.21016 0.95129 1.00879 0.95332 0.90964 0.91258 0.93203 0.91794 0.89833 0.93239 0.90352 0.92110 0.92172 0.91977 0.91934 0.91999 0.91797 0.89595 0.83981 0.82473 0.83684 0.85391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.07 9.10 71.98 0.65 -2.41 16 2 C 0.04 0.84 5.53 86.30 0.48 1.32 16 3 N -0.54 -11.65 4.66 -900.79 -4.20 -15.85 16 4 C 0.07 1.62 4.82 86.31 0.42 2.04 16 5 C -0.08 -2.56 5.25 30.60 0.16 -2.40 16 6 C -0.09 -3.42 5.67 71.98 0.41 -3.01 16 7 S -0.20 -10.92 21.44 -56.49 -1.21 -12.13 16 8 C -0.54 -31.20 9.50 67.95 0.65 -30.56 16 9 H 0.07 4.08 7.80 -2.91 -0.02 4.06 16 10 C 0.01 0.76 5.49 84.86 0.47 1.23 16 11 N -0.91 -55.42 13.22 21.65 0.29 -55.14 16 12 Si 0.99 44.21 29.55 68.60 2.03 46.23 16 13 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 14 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 15 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 16 C 0.09 1.52 4.92 85.56 0.42 1.94 16 17 C -0.07 -1.15 4.89 -19.87 -0.10 -1.24 16 18 C -0.11 -1.50 7.91 22.27 0.18 -1.32 16 19 C -0.11 -1.27 10.05 22.26 0.22 -1.05 16 20 C -0.12 -1.71 9.83 22.29 0.22 -1.49 16 21 C -0.05 -0.89 6.32 22.32 0.14 -0.75 16 22 Cl -0.08 -1.49 28.96 -2.72 -0.08 -1.57 16 23 C -0.10 -1.98 9.49 22.29 0.21 -1.77 16 24 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.07 0.92 5.61 -2.39 -0.01 0.91 16 26 H 0.05 0.96 6.40 -2.38 -0.02 0.94 16 27 H 0.06 1.50 6.65 -2.39 -0.02 1.48 16 28 H 0.08 1.51 5.95 -2.39 -0.01 1.50 16 29 H 0.05 1.14 5.89 -2.39 -0.01 1.12 16 30 H 0.08 1.82 7.82 -2.38 -0.02 1.80 16 31 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.06 2.00 6.74 -2.39 -0.02 1.99 16 33 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.06 2.47 8.14 -2.40 -0.02 2.45 16 35 H 0.27 15.29 8.31 -92.70 -0.77 14.51 16 36 H 0.06 0.92 5.96 -2.39 -0.01 0.91 16 37 H 0.09 1.44 7.81 -2.38 -0.02 1.42 16 38 H 0.14 1.43 7.27 -2.91 -0.02 1.41 16 39 H 0.16 0.99 8.06 -2.92 -0.02 0.97 16 40 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 41 H 0.13 2.49 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -67.50 356.88 2.37 -65.13 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 1.02 Total: 12.80 kcal Atomic # 6 Polarization: -43.99 SS G_CDS: 4.52 Total: -39.47 kcal Atomic # 7 Polarization: -67.07 SS G_CDS: -3.91 Total: -70.98 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.23 kcal Atomic # 16 Polarization: -10.92 SS G_CDS: -1.21 Total: -12.13 kcal Atomic # 17 Polarization: -1.49 SS G_CDS: -0.08 Total: -1.57 kcal Total: -67.50 2.37 -65.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074981785.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.846 kcal (2) G-P(sol) polarization free energy of solvation -67.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds