Wall clock time and date at job start Fri Apr 10 2020 22:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46853 * 2 1 4 4 O 1.42897 * 109.47739 * 120.00394 * 2 1 3 5 5 C 1.42893 * 114.00248 * 150.00045 * 4 2 1 6 6 C 1.53007 * 109.47199 * 180.02562 * 5 4 2 7 7 S 1.81400 * 109.47311 * 180.02562 * 6 5 4 8 8 O 1.42100 * 110.54605 * 73.33266 * 7 6 5 9 9 O 1.42103 * 110.53875 * 296.58524 * 7 6 5 10 10 N 1.65595 * 104.44762 * 184.96278 * 7 6 5 11 11 C 1.38860 * 119.99673 * 299.01183 * 10 7 6 12 12 C 1.39570 * 119.83855 * 133.76525 * 11 10 7 13 13 C 1.36336 * 120.15973 * 180.25556 * 12 11 10 14 14 C 1.40887 * 119.83487 * 359.49755 * 13 12 11 15 15 C 1.41135 * 120.15572 * 180.25348 * 14 13 12 16 16 H 1.08008 * 120.00478 * 209.35669 * 15 14 13 17 17 C 1.39868 * 119.99998 * 29.35750 * 15 14 13 18 18 N 1.30896 * 120.00203 * 10.62459 * 17 15 14 19 19 Si 1.86807 * 119.99914 * 190.62441 * 17 15 14 20 20 H 1.48505 * 109.47194 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46755 * 119.99875 * 19 17 15 22 22 H 1.48494 * 109.47331 * 239.99717 * 19 17 15 23 23 C 1.40888 * 119.69268 * 0.51580 * 14 13 12 24 24 C 1.36338 * 119.83196 * 359.73751 * 23 14 13 25 25 H 1.08993 * 109.47075 * 299.98906 * 1 2 3 26 26 H 1.08999 * 109.47345 * 60.00261 * 1 2 3 27 27 H 1.09008 * 109.46512 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.47162 * 240.00645 * 2 1 3 29 29 H 1.08994 * 109.46911 * 180.02562 * 3 2 1 30 30 H 1.08993 * 109.47003 * 300.00409 * 3 2 1 31 31 H 1.08996 * 109.46450 * 60.00139 * 3 2 1 32 32 H 1.09003 * 109.47367 * 60.00379 * 5 4 2 33 33 H 1.08999 * 109.47214 * 300.00044 * 5 4 2 34 34 H 1.08994 * 109.46786 * 59.99666 * 6 5 4 35 35 H 1.09007 * 109.46418 * 300.00159 * 6 5 4 36 36 H 0.97000 * 120.00621 * 119.01760 * 10 7 6 37 37 H 1.07997 * 119.91894 * 359.97051 * 12 11 10 38 38 H 1.07997 * 120.08350 * 179.74231 * 13 12 11 39 39 H 0.97002 * 120.00031 * 180.02562 * 18 17 15 40 40 H 1.07997 * 120.08496 * 179.70993 * 23 14 13 41 41 H 1.08004 * 119.92107 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0065 -0.6737 1.1667 5 6 3.2661 -1.3244 0.9884 6 6 3.6757 -2.0092 2.2940 7 16 5.2751 -2.8346 2.0679 8 8 6.3258 -1.8796 2.0124 9 8 5.1707 -3.8664 1.0963 10 7 5.5296 -3.6395 3.4926 11 6 5.6193 -2.9313 4.6836 12 6 4.9177 -3.3707 5.8073 13 6 4.9969 -2.6775 6.9786 14 6 5.7978 -1.5210 7.0558 15 6 5.8890 -0.8012 8.2664 16 1 6.0707 0.2633 8.2495 17 6 5.7440 -1.4665 9.4882 18 7 5.7323 -2.7749 9.5236 19 14 5.5670 -0.4876 11.0694 20 1 5.6104 0.9642 10.7603 21 1 4.2701 -0.8176 11.7131 22 1 6.6789 -0.8315 11.9915 23 6 6.5030 -1.0832 5.9174 24 6 6.4103 -1.7835 4.7513 25 1 -0.3633 0.5136 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 3.1299 1.4426 -0.0005 30 1 1.6765 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 4.0201 -0.5873 0.7123 33 1 3.1810 -2.0706 0.1984 34 1 2.9216 -2.7463 2.5696 35 1 3.7606 -1.2632 3.0843 36 1 5.6161 -4.6057 3.4951 37 1 4.3069 -4.2594 5.7475 38 1 4.4502 -3.0162 7.8462 39 1 5.6314 -3.2362 10.3709 40 1 7.1151 -0.1949 5.9682 41 1 6.9499 -1.4489 3.8776 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080782822.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:50:27 Heat of formation + Delta-G solvation = -128.194969 kcal Electronic energy + Delta-G solvation = -23718.792009 eV Core-core repulsion = 20110.547152 eV Total energy + Delta-G solvation = -3608.244857 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.118 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.85396 -39.51236 -38.21838 -37.13843 -36.49457 -34.55142 -34.47425 -31.82817 -31.44550 -30.49670 -28.13691 -26.55988 -24.61900 -23.11832 -22.60806 -22.33432 -20.33136 -19.33805 -18.76259 -18.46163 -17.80986 -17.39678 -17.05888 -16.81556 -16.22175 -15.89104 -15.76972 -15.29336 -14.89133 -14.55463 -14.18797 -14.13631 -13.82842 -13.69386 -13.61688 -13.32027 -13.20693 -13.10754 -13.05451 -12.97698 -12.82957 -12.63799 -12.56941 -12.27641 -12.18546 -12.15812 -11.77814 -11.61460 -11.54092 -11.13571 -10.69780 -10.66265 -9.50401 -8.96771 -8.60494 -6.32011 -0.86519 0.86916 1.13256 1.41930 1.49672 1.55981 1.66135 2.23014 2.42093 2.71665 2.89602 3.20200 3.51597 3.67238 3.73642 3.99239 4.08573 4.09782 4.26012 4.37348 4.43727 4.55202 4.62931 4.68021 4.74313 4.86588 4.88065 4.93286 5.06376 5.17166 5.25149 5.26863 5.31282 5.38766 5.67319 5.73980 6.08379 6.12279 6.16700 6.25524 6.40637 6.67836 6.93395 7.01257 8.35424 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.014594 B = 0.003448 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.121282 B = 8119.014343 C = 9294.618807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.063 3.937 3 C -0.179 4.179 4 O -0.392 6.392 5 C 0.068 3.932 6 C -0.620 4.620 7 S 2.631 3.369 8 O -0.978 6.978 9 O -0.980 6.980 10 N -1.031 6.031 11 C 0.007 3.993 12 C -0.099 4.099 13 C -0.169 4.169 14 C 0.080 3.920 15 C -0.491 4.491 16 H 0.077 0.923 17 C 0.033 3.967 18 N -0.827 5.827 19 Si 0.984 3.016 20 H -0.259 1.259 21 H -0.264 1.264 22 H -0.268 1.268 23 C -0.221 4.221 24 C -0.120 4.120 25 H 0.056 0.944 26 H 0.093 0.907 27 H 0.060 0.940 28 H 0.078 0.922 29 H 0.053 0.947 30 H 0.088 0.912 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.156 0.844 35 H 0.137 0.863 36 H 0.424 0.576 37 H 0.123 0.877 38 H 0.110 0.890 39 H 0.288 0.712 40 H 0.102 0.898 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.690 2.117 -13.965 16.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.006 3.994 3 C -0.236 4.236 4 O -0.313 6.313 5 C -0.010 4.010 6 C -0.750 4.750 7 S 2.726 3.274 8 O -0.968 6.968 9 O -0.971 6.971 10 N -0.783 5.783 11 C -0.089 4.089 12 C -0.121 4.121 13 C -0.189 4.189 14 C 0.077 3.923 15 C -0.521 4.521 16 H 0.095 0.905 17 C -0.181 4.181 18 N -0.454 5.454 19 Si 0.805 3.195 20 H -0.183 1.183 21 H -0.189 1.189 22 H -0.193 1.193 23 C -0.241 4.241 24 C -0.141 4.141 25 H 0.075 0.925 26 H 0.111 0.889 27 H 0.080 0.920 28 H 0.096 0.904 29 H 0.072 0.928 30 H 0.107 0.893 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.174 0.826 35 H 0.156 0.844 36 H 0.262 0.738 37 H 0.141 0.859 38 H 0.127 0.873 39 H 0.099 0.901 40 H 0.120 0.880 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.239 2.074 -14.462 16.773 hybrid contribution -0.175 -0.009 1.282 1.294 sum -8.414 2.064 -13.179 15.772 Atomic orbital electron populations 1.21888 0.92329 1.02962 1.03332 1.22485 0.96188 0.92960 0.87814 1.22348 1.01518 0.96369 1.03381 1.87981 1.35561 1.70312 1.37401 1.22188 0.87983 0.96711 0.94105 1.30587 1.22827 1.14337 1.07268 1.04448 0.76881 0.73976 0.72064 1.93527 1.52659 1.64883 1.85769 1.93544 1.88113 1.56244 1.59163 1.52300 1.86728 1.18595 1.20721 1.16791 1.06875 0.98072 0.87160 1.20725 0.98857 0.99857 0.92615 1.21008 1.02029 0.98860 0.97025 1.18067 0.89026 0.92410 0.92821 1.19859 1.44596 0.96380 0.91260 0.90520 1.26720 0.91374 0.95874 1.04140 1.69863 1.36132 1.09663 1.29696 0.85125 0.78851 0.79229 0.76309 1.18297 1.18871 1.19330 1.20890 1.05354 1.03523 0.94343 1.21234 0.97761 0.96474 0.98672 0.92523 0.88867 0.92044 0.90427 0.92792 0.89312 0.92525 0.91322 0.90029 0.82636 0.84424 0.73834 0.85933 0.87254 0.90125 0.88016 0.84952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.56 71.98 0.69 -1.50 16 2 C 0.06 1.13 3.34 30.60 0.10 1.23 16 3 C -0.18 -2.95 9.53 71.98 0.69 -2.26 16 4 O -0.39 -9.67 9.99 -148.98 -1.49 -11.15 16 5 C 0.07 1.58 5.75 71.98 0.41 1.99 16 6 C -0.62 -15.72 6.29 71.98 0.45 -15.27 16 7 S 2.63 77.30 5.35 -56.49 -0.30 77.00 16 8 O -0.98 -34.92 15.14 -127.65 -1.93 -36.86 16 9 O -0.98 -30.78 18.08 -127.65 -2.31 -33.08 16 10 N -1.03 -32.48 5.63 -51.06 -0.29 -32.77 16 11 C 0.01 0.28 6.02 38.67 0.23 0.51 16 12 C -0.10 -4.15 9.90 22.15 0.22 -3.93 16 13 C -0.17 -8.31 8.59 22.47 0.19 -8.12 16 14 C 0.08 4.14 5.55 -21.27 -0.12 4.02 16 15 C -0.49 -25.61 9.04 23.38 0.21 -25.40 16 16 H 0.08 3.87 7.87 -2.91 -0.02 3.85 16 17 C 0.03 1.62 5.25 85.23 0.45 2.07 16 18 N -0.83 -41.60 10.86 21.82 0.24 -41.36 16 19 Si 0.98 37.12 29.57 68.60 2.03 39.15 16 20 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 21 H -0.26 -9.53 7.11 99.48 0.71 -8.83 16 22 H -0.27 -9.80 7.11 99.48 0.71 -9.10 16 23 C -0.22 -10.66 9.74 22.48 0.22 -10.44 16 24 C -0.12 -5.27 9.16 22.15 0.20 -5.07 16 25 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 28 H 0.08 1.13 7.79 -2.38 -0.02 1.12 16 29 H 0.05 0.94 7.87 -2.39 -0.02 0.92 16 30 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.07 1.46 7.87 -2.39 -0.02 1.44 16 33 H 0.08 1.55 8.08 -2.39 -0.02 1.53 16 34 H 0.16 3.41 8.14 -2.39 -0.02 3.39 16 35 H 0.14 3.83 8.14 -2.39 -0.02 3.81 16 36 H 0.42 11.35 8.91 -96.74 -0.86 10.48 16 37 H 0.12 4.35 8.06 -2.91 -0.02 4.33 16 38 H 0.11 5.62 6.25 -2.91 -0.02 5.60 16 39 H 0.29 13.08 8.30 -92.71 -0.77 12.31 16 40 H 0.10 4.70 8.06 -2.91 -0.02 4.67 16 41 H 0.13 5.61 5.60 -2.91 -0.02 5.59 16 Total: -1.00 -64.38 355.31 0.07 -64.31 By element: Atomic # 1 Polarization: 36.76 SS G_CDS: 0.17 Total: 36.93 kcal Atomic # 6 Polarization: -66.11 SS G_CDS: 3.95 Total: -62.16 kcal Atomic # 7 Polarization: -74.08 SS G_CDS: -0.05 Total: -74.13 kcal Atomic # 8 Polarization: -75.37 SS G_CDS: -5.73 Total: -81.09 kcal Atomic # 14 Polarization: 37.12 SS G_CDS: 2.03 Total: 39.15 kcal Atomic # 16 Polarization: 77.30 SS G_CDS: -0.30 Total: 77.00 kcal Total: -64.38 0.07 -64.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080782822.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.887 kcal (2) G-P(sol) polarization free energy of solvation -64.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds