Wall clock time and date at job start Fri Apr 10 2020 22:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42907 * 109.46639 * 2 1 4 4 C 1.42905 * 113.99479 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46807 * 180.02562 * 4 3 2 6 6 C 1.53005 * 109.46869 * 179.97438 * 5 4 3 7 7 N 1.46503 * 109.46690 * 180.02562 * 6 5 4 8 8 S 1.65600 * 119.99765 * 164.72873 * 7 6 5 9 9 O 1.42094 * 106.40512 * 178.53760 * 8 7 6 10 10 O 1.42106 * 106.40226 * 311.45618 * 8 7 6 11 11 C 1.76198 * 107.22067 * 64.99582 * 8 7 6 12 12 C 1.38640 * 119.75037 * 269.72949 * 11 8 7 13 13 C 1.37618 * 120.24754 * 179.72238 * 12 11 8 14 14 C 1.40708 * 119.74303 * 0.56852 * 13 12 11 15 15 C 1.41395 * 120.24350 * 179.68190 * 14 13 12 16 16 H 1.07999 * 120.00421 * 204.40366 * 15 14 13 17 17 C 1.39948 * 120.00045 * 24.41232 * 15 14 13 18 18 N 1.30828 * 119.99938 * 17.83864 * 17 15 14 19 19 Si 1.86804 * 120.00206 * 197.84763 * 17 15 14 20 20 H 1.48497 * 109.46953 * 59.99362 * 19 17 15 21 21 H 1.48494 * 109.47057 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.46965 * 299.99721 * 19 17 15 23 23 C 1.40718 * 119.51587 * 359.70656 * 14 13 12 24 24 C 1.37623 * 119.74191 * 359.97438 * 23 14 13 25 25 H 1.09002 * 109.46979 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46588 * 299.99609 * 1 2 3 27 27 H 1.08997 * 109.47561 * 59.99850 * 1 2 3 28 28 H 1.08996 * 109.46808 * 240.00837 * 2 1 3 29 29 H 1.08997 * 109.47561 * 120.00150 * 2 1 3 30 30 H 1.08997 * 109.47025 * 60.00226 * 4 3 2 31 31 H 1.08999 * 109.47282 * 299.99785 * 4 3 2 32 32 H 1.08997 * 109.47183 * 60.00274 * 5 4 3 33 33 H 1.08999 * 109.46984 * 299.99919 * 5 4 3 34 34 H 1.08997 * 109.46914 * 60.00208 * 6 5 4 35 35 H 1.08999 * 109.47332 * 299.99805 * 6 5 4 36 36 H 0.96997 * 120.00372 * 344.99577 * 7 6 5 37 37 H 1.08001 * 119.87510 * 359.97438 * 12 11 8 38 38 H 1.07997 * 120.12712 * 180.27635 * 13 12 11 39 39 H 0.96994 * 120.00050 * 180.02562 * 18 17 15 40 40 H 1.07995 * 120.13001 * 179.97438 * 23 14 13 41 41 H 1.07999 * 119.87507 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8253 2.9385 0.0001 6 6 5.3506 3.0593 0.0001 7 7 5.7282 4.4748 0.0014 8 16 7.2784 4.9178 0.3795 9 8 7.3321 6.3326 0.2593 10 8 7.6132 4.2261 1.5748 11 6 8.3275 4.2714 -0.8799 12 6 8.8770 3.0067 -0.7355 13 6 9.6932 2.4895 -1.7154 14 6 9.9788 3.2542 -2.8615 15 6 10.8214 2.7359 -3.8718 16 1 11.3547 3.4080 -4.5277 17 6 10.9643 1.3518 -4.0218 18 7 10.0851 0.5420 -3.4901 19 14 12.4106 0.6606 -4.9810 20 1 13.6797 1.0847 -4.3370 21 1 12.3333 -0.8223 -4.9929 22 1 12.3687 1.1701 -6.3752 23 6 9.4201 4.5388 -2.9948 24 6 8.6013 5.0332 -2.0053 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3632 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.8332 0.9768 -0.8908 31 1 3.8340 0.9766 0.8892 32 1 3.4229 3.4215 0.8906 33 1 3.4221 3.4225 -0.8894 34 1 5.7533 2.5762 -0.8901 35 1 5.7534 2.5754 0.8899 36 1 5.0693 5.1528 -0.2154 37 1 8.6605 2.4237 0.1474 38 1 10.1166 1.5024 -1.6030 39 1 10.1843 -0.4173 -3.5938 40 1 9.6330 5.1345 -3.8701 41 1 8.1717 6.0191 -2.1051 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081298425.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:50:31 Heat of formation + Delta-G solvation = -127.193835 kcal Electronic energy + Delta-G solvation = -23349.872166 eV Core-core repulsion = 19741.670721 eV Total energy + Delta-G solvation = -3608.201445 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.118 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -38.31676 -37.59002 -36.53488 -35.75016 -35.12335 -34.05743 -32.19544 -30.27687 -30.22837 -29.48094 -25.83549 -24.89502 -22.97952 -21.77843 -21.42198 -21.13678 -18.84126 -17.63450 -17.08394 -16.98881 -16.54436 -16.41981 -15.61598 -15.48461 -14.89998 -14.56208 -14.22280 -14.08346 -13.46941 -13.33789 -13.20632 -12.83139 -12.43959 -12.25142 -12.20539 -11.96552 -11.80902 -11.78238 -11.46811 -11.36876 -11.29037 -11.24116 -11.16904 -11.06393 -11.03322 -10.90081 -10.44522 -9.77900 -9.73874 -9.65470 -9.51838 -9.04079 -7.97923 -7.72020 -7.16726 -4.82125 1.25635 2.24079 2.86380 2.87886 2.90585 2.93506 3.41522 3.64495 3.80935 4.22472 4.52618 4.81012 4.88183 4.90696 5.00265 5.08120 5.16825 5.24734 5.36564 5.37297 5.47204 5.54516 5.66800 5.69840 5.83988 5.90521 6.06028 6.09908 6.11013 6.28637 6.66228 6.69202 6.89655 7.03365 7.04743 7.29668 7.33727 7.41314 7.61732 7.75206 7.95128 8.29827 8.49421 8.63262 9.74675 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.010720 B = 0.003619 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2611.311999 B = 7734.778045 C = 9828.658462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.392 6.392 4 C 0.062 3.938 5 C -0.123 4.123 6 C 0.123 3.877 7 N -1.126 6.126 8 S 2.695 3.305 9 O -0.986 6.986 10 O -0.985 6.985 11 C -0.788 4.788 12 C -0.017 4.017 13 C -0.183 4.183 14 C 0.139 3.861 15 C -0.435 4.435 16 H 0.087 0.913 17 C 0.073 3.927 18 N -0.766 5.766 19 Si 0.918 3.082 20 H -0.259 1.259 21 H -0.274 1.274 22 H -0.261 1.261 23 C -0.240 4.240 24 C 0.003 3.997 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.410 0.590 37 H 0.103 0.897 38 H 0.123 0.877 39 H 0.289 0.711 40 H 0.100 0.900 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.521 -3.461 2.849 12.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.311 6.311 4 C -0.015 4.015 5 C -0.162 4.162 6 C -0.003 4.003 7 N -0.882 5.882 8 S 2.794 3.206 9 O -0.977 6.977 10 O -0.975 6.975 11 C -0.884 4.884 12 C -0.038 4.038 13 C -0.203 4.203 14 C 0.136 3.864 15 C -0.462 4.462 16 H 0.105 0.895 17 C -0.149 4.149 18 N -0.389 5.389 19 Si 0.741 3.259 20 H -0.183 1.183 21 H -0.199 1.199 22 H -0.186 1.186 23 C -0.260 4.260 24 C -0.017 4.017 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.243 0.757 37 H 0.121 0.879 38 H 0.140 0.860 39 H 0.100 0.900 40 H 0.118 0.882 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -11.378 -3.213 3.696 12.387 hybrid contribution 0.613 -0.806 -1.285 1.636 sum -10.765 -4.019 2.411 11.741 Atomic orbital electron populations 1.21744 0.93882 1.02141 1.03073 1.22454 0.95461 0.83902 1.00220 1.87854 1.21363 1.26401 1.95513 1.22433 0.80997 0.97174 1.00900 1.21657 0.95029 0.95538 1.03972 1.21042 0.94815 0.81716 1.02758 1.55694 1.29996 1.13483 1.89058 1.01165 0.72215 0.72773 0.74468 1.93490 1.86380 1.29886 1.87917 1.93480 1.83136 1.75606 1.45271 1.29155 1.29926 1.09076 1.20203 1.20266 0.94692 0.92079 0.96725 1.21335 1.03768 1.01324 0.93897 1.17851 0.87010 0.90602 0.90973 1.19918 1.21474 0.91807 1.13050 0.89468 1.26131 0.96521 0.97234 0.95058 1.69804 1.30196 1.05722 1.33144 0.86191 0.81267 0.78041 0.80433 1.18347 1.19894 1.18563 1.21056 1.05957 0.98972 1.00026 1.20169 0.94375 0.95836 0.91364 0.91190 0.91928 0.91872 0.93294 0.93385 0.92634 0.92854 0.90503 0.90424 0.91067 0.90418 0.75727 0.87886 0.85960 0.89951 0.88191 0.87759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 10.28 37.16 0.38 -0.76 16 2 C 0.06 0.51 6.66 37.16 0.25 0.76 16 3 O -0.39 -4.60 10.34 -35.23 -0.36 -4.96 16 4 C 0.06 0.68 5.94 37.16 0.22 0.90 16 5 C -0.12 -1.39 5.73 -26.73 -0.15 -1.54 16 6 C 0.12 1.67 6.23 -4.04 -0.03 1.64 16 7 N -1.13 -16.64 6.00 -10.61 -0.06 -16.70 16 8 S 2.70 51.34 5.73 -107.50 -0.62 50.72 16 9 O -0.99 -20.71 17.26 -57.17 -0.99 -21.70 16 10 O -0.98 -20.84 16.72 -57.17 -0.96 -21.79 16 11 C -0.79 -17.12 5.97 -39.29 -0.23 -17.36 16 12 C -0.02 -0.39 9.49 -39.66 -0.38 -0.77 16 13 C -0.18 -4.50 8.70 -38.88 -0.34 -4.84 16 14 C 0.14 3.50 5.57 -106.83 -0.60 2.90 16 15 C -0.44 -10.56 9.05 -37.74 -0.34 -10.90 16 16 H 0.09 2.00 7.91 -52.49 -0.41 1.59 16 17 C 0.07 1.65 5.14 -17.34 -0.09 1.56 16 18 N -0.77 -17.81 10.95 55.55 0.61 -17.20 16 19 Si 0.92 16.81 29.60 -169.99 -5.03 11.78 16 20 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 21 H -0.27 -4.87 7.11 56.52 0.40 -4.47 16 22 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 23 C -0.24 -5.63 9.80 -38.87 -0.38 -6.01 16 24 C 0.00 0.06 9.49 -39.66 -0.38 -0.32 16 25 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.08 1.05 7.74 -51.93 -0.40 0.65 16 36 H 0.41 5.06 8.65 -34.47 -0.30 4.76 16 37 H 0.10 2.15 7.59 -52.49 -0.40 1.75 16 38 H 0.12 3.03 6.16 -52.49 -0.32 2.71 16 39 H 0.29 6.03 8.30 -40.82 -0.34 5.70 16 40 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 41 H 0.10 2.10 7.60 -52.49 -0.40 1.70 16 LS Contribution 359.39 15.07 5.42 5.42 Total: -1.00 -29.91 359.39 -10.07 -39.99 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -6.02 Total: 9.19 kcal Atomic # 6 Polarization: -32.68 SS G_CDS: -2.06 Total: -34.74 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: 0.54 Total: -33.90 kcal Atomic # 8 Polarization: -46.14 SS G_CDS: -2.31 Total: -48.45 kcal Atomic # 14 Polarization: 16.81 SS G_CDS: -5.03 Total: 11.78 kcal Atomic # 16 Polarization: 51.34 SS G_CDS: -0.62 Total: 50.72 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.91 -10.07 -39.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081298425.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.207 kcal (2) G-P(sol) polarization free energy of solvation -29.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds