Wall clock time and date at job start Fri Apr 10 2020 22:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35904 * 116.99990 * 2 1 4 4 C 1.38757 * 120.05439 * 0.02562 * 3 2 1 5 5 C 1.38115 * 119.94069 * 180.02562 * 4 3 2 6 6 C 1.38289 * 120.05896 * 359.97438 * 5 4 3 7 7 C 1.38239 * 120.11188 * 0.02562 * 6 5 4 8 8 C 1.38166 * 120.05405 * 359.97438 * 7 6 5 9 9 C 1.50705 * 120.02693 * 179.97438 * 8 7 6 10 10 C 1.53005 * 109.46768 * 257.43524 * 9 8 7 11 11 H 1.08997 * 109.47202 * 303.80752 * 10 9 8 12 12 C 1.52995 * 109.47053 * 183.80564 * 10 9 8 13 13 N 1.46504 * 109.46863 * 63.80898 * 10 9 8 14 14 C 1.46494 * 119.99930 * 54.15781 * 13 10 9 15 15 S 1.65604 * 119.99790 * 234.15637 * 13 10 9 16 16 O 1.42100 * 106.40089 * 203.85963 * 15 13 10 17 17 O 1.42094 * 106.40229 * 336.77842 * 15 13 10 18 18 C 1.76201 * 107.21515 * 90.32266 * 15 13 10 19 19 H 1.07996 * 120.00513 * 3.87497 * 18 15 13 20 20 C 1.37880 * 119.99651 * 183.87907 * 18 15 13 21 21 N 1.31512 * 119.99879 * 180.02562 * 20 18 15 22 22 Si 1.86801 * 120.00109 * 359.97438 * 20 18 15 23 23 H 1.48499 * 109.46697 * 90.00465 * 22 20 18 24 24 H 1.48496 * 109.47142 * 210.00493 * 22 20 18 25 25 H 1.48497 * 109.47328 * 330.00854 * 22 20 18 26 26 H 1.09005 * 109.46981 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47230 * 299.99362 * 1 2 3 28 28 H 1.08997 * 109.47492 * 59.99769 * 1 2 3 29 29 H 1.07997 * 120.02656 * 0.03669 * 4 3 2 30 30 H 1.08009 * 119.97044 * 179.71365 * 5 4 3 31 31 H 1.08006 * 119.94225 * 179.97438 * 6 5 4 32 32 H 1.08000 * 119.97509 * 180.02562 * 7 6 5 33 33 H 1.09000 * 109.47521 * 17.43487 * 9 8 7 34 34 H 1.09001 * 109.47367 * 137.44080 * 9 8 7 35 35 H 1.09007 * 109.47294 * 180.02562 * 12 10 9 36 36 H 1.09006 * 109.47533 * 300.00072 * 12 10 9 37 37 H 1.09002 * 109.47242 * 60.00515 * 12 10 9 38 38 H 1.09008 * 109.47121 * 90.00255 * 14 13 10 39 39 H 1.09008 * 109.47197 * 209.99667 * 14 13 10 40 40 H 1.08994 * 109.47380 * 329.99914 * 14 13 10 41 41 H 0.97001 * 120.00202 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9208 3.6047 0.0000 6 6 3.3019 3.6758 -0.0005 7 6 4.0559 2.5172 -0.0011 8 6 3.4311 1.2849 -0.0005 9 6 4.2537 0.0222 -0.0017 10 6 4.2675 -0.5762 -1.4098 11 1 3.2435 -0.7441 -1.7433 12 6 5.0225 -1.9067 -1.3912 13 7 4.9342 0.3508 -2.3278 14 6 6.2824 0.8379 -2.0258 15 16 4.1637 0.8480 -3.7068 16 8 5.1826 1.2363 -4.6179 17 8 3.1925 -0.1457 -4.0043 18 6 3.2702 2.3127 -3.3057 19 1 3.3545 2.7437 -2.3191 20 6 2.4632 2.9087 -4.2516 21 7 1.7967 4.0022 -3.9524 22 14 2.3177 2.1636 -5.9584 23 1 1.1982 1.1881 -5.9788 24 1 2.0547 3.2397 -6.9474 25 1 3.5843 1.4708 -6.3057 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 0.2128 2.3203 0.0016 30 1 1.3339 4.5114 -0.0043 31 1 3.7922 4.6381 -0.0014 32 1 5.1344 2.5752 -0.0011 33 1 5.2739 0.2528 0.3050 34 1 3.8187 -0.6956 0.6937 35 1 5.0328 -2.3328 -2.3945 36 1 6.0467 -1.7388 -1.0578 37 1 4.5265 -2.5964 -0.7083 38 1 7.0188 0.1631 -2.4624 39 1 6.4106 1.8359 -2.4450 40 1 6.4210 0.8771 -0.9454 41 1 1.2286 4.4213 -4.6177 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088203070.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:50:51 Heat of formation + Delta-G solvation = -111.569593 kcal Electronic energy + Delta-G solvation = -26400.448461 eV Core-core repulsion = 22792.924534 eV Total energy + Delta-G solvation = -3607.523927 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.118 amu Computer time = 2.19 seconds Orbital eigenvalues (eV) -41.09849 -38.64859 -37.79695 -37.61744 -36.40926 -35.01502 -33.44540 -31.52019 -30.76787 -28.34753 -28.22154 -27.12903 -27.05448 -22.90843 -22.82340 -21.53465 -20.43912 -19.15420 -18.77953 -18.65678 -17.27875 -17.05024 -16.68582 -16.52963 -16.34686 -15.67395 -15.40641 -15.24230 -15.13912 -14.70164 -14.67888 -14.46092 -13.93296 -13.66043 -13.45813 -13.34325 -13.26976 -12.99495 -12.91879 -12.73375 -12.64676 -12.53027 -12.44496 -12.28260 -12.05627 -11.89233 -11.71730 -11.60684 -11.34932 -11.26351 -10.94286 -9.75577 -9.47350 -8.84784 -8.79977 -7.29651 0.23360 0.62177 0.73616 1.01894 1.09962 1.18474 1.91289 2.53174 2.54335 2.56652 3.02609 3.50968 3.90582 3.99830 4.06874 4.09881 4.24905 4.37090 4.41966 4.43676 4.47784 4.53661 4.63637 4.69665 4.76140 4.80919 4.85764 4.88325 4.96096 5.03585 5.05128 5.10873 5.31515 5.43662 5.44167 5.54405 5.62571 5.72481 5.81873 6.06619 6.08249 6.36710 6.62825 6.72608 8.32865 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.011894 B = 0.008924 C = 0.006989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.559665 B = 3136.945496 C = 4005.060580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.326 6.326 3 C 0.115 3.885 4 C -0.213 4.213 5 C -0.083 4.083 6 C -0.159 4.159 7 C -0.079 4.079 8 C -0.122 4.122 9 C -0.069 4.069 10 C 0.148 3.852 11 H 0.068 0.932 12 C -0.153 4.153 13 N -0.990 5.990 14 C 0.088 3.912 15 S 2.675 3.325 16 O -1.039 7.039 17 O -1.039 7.039 18 C -1.022 5.022 19 H 0.144 0.856 20 C 0.126 3.874 21 N -0.837 5.837 22 Si 0.811 3.189 23 H -0.250 1.250 24 H -0.227 1.227 25 H -0.250 1.250 26 H 0.122 0.878 27 H 0.069 0.931 28 H 0.039 0.961 29 H 0.128 0.872 30 H 0.121 0.879 31 H 0.127 0.873 32 H 0.144 0.856 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.040 0.960 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.105 0.895 41 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.464 -5.734 12.703 14.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.240 6.240 3 C 0.070 3.930 4 C -0.232 4.232 5 C -0.101 4.101 6 C -0.178 4.178 7 C -0.097 4.097 8 C -0.122 4.122 9 C -0.107 4.107 10 C 0.042 3.958 11 H 0.086 0.914 12 C -0.212 4.212 13 N -0.829 5.829 14 C -0.057 4.057 15 S 2.779 3.221 16 O -1.029 7.029 17 O -1.029 7.029 18 C -1.156 5.156 19 H 0.161 0.839 20 C -0.090 4.090 21 N -0.468 5.468 22 Si 0.631 3.369 23 H -0.174 1.174 24 H -0.149 1.149 25 H -0.173 1.173 26 H 0.140 0.860 27 H 0.087 0.913 28 H 0.057 0.943 29 H 0.146 0.854 30 H 0.139 0.861 31 H 0.145 0.855 32 H 0.162 0.838 33 H 0.121 0.879 34 H 0.115 0.885 35 H 0.059 0.941 36 H 0.101 0.899 37 H 0.105 0.895 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.123 0.877 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.493 -6.223 11.823 13.592 hybrid contribution -1.160 0.914 -0.985 1.775 sum 1.333 -5.309 10.838 12.142 Atomic orbital electron populations 1.23225 0.77634 1.05186 1.01292 1.85977 1.22427 1.26776 1.88835 1.19002 0.92507 0.84305 0.97139 1.21260 1.00158 0.92849 1.08915 1.20941 0.95290 0.96985 0.96898 1.21134 0.94072 0.99023 1.03533 1.21031 1.00452 0.90870 0.97309 1.19330 0.90355 0.96682 1.05878 1.20804 1.00419 0.93734 0.95760 1.20936 0.96222 0.89128 0.89492 0.91375 1.22115 1.01804 0.95277 1.01983 1.57016 1.26203 1.59411 1.40298 1.21619 0.81328 0.98993 1.03747 1.01071 0.73238 0.75334 0.72504 1.93391 1.60889 1.85153 1.63497 1.93326 1.62572 1.62786 1.84242 1.31107 1.41982 1.31211 1.11333 0.83880 1.24781 0.91863 0.93345 0.99053 1.70004 1.24114 1.16665 1.36015 0.87730 0.82397 0.82023 0.84732 1.17394 1.14945 1.17326 0.86027 0.91263 0.94268 0.85439 0.86077 0.85512 0.83798 0.87949 0.88527 0.94078 0.89938 0.89499 0.92072 0.92412 0.87693 0.90612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.55 9.81 113.37 1.11 1.67 16 2 O -0.33 -10.91 9.38 -92.47 -0.87 -11.78 16 3 C 0.12 4.19 6.59 22.51 0.15 4.34 16 4 C -0.21 -7.79 9.04 22.36 0.20 -7.59 16 5 C -0.08 -3.03 10.02 22.25 0.22 -2.81 16 6 C -0.16 -5.57 8.95 22.28 0.20 -5.37 16 7 C -0.08 -2.58 8.28 22.25 0.18 -2.39 16 8 C -0.12 -4.08 4.60 -19.77 -0.09 -4.18 16 9 C -0.07 -1.87 4.30 29.85 0.13 -1.74 16 10 C 0.15 4.92 2.57 44.99 0.12 5.04 16 11 H 0.07 2.76 6.57 -2.39 -0.02 2.74 16 12 C -0.15 -3.91 9.28 71.98 0.67 -3.25 16 13 N -0.99 -38.05 2.75 -516.51 -1.42 -39.47 16 14 C 0.09 2.63 9.58 127.77 1.22 3.85 16 15 S 2.67 138.86 4.11 -56.49 -0.23 138.63 16 16 O -1.04 -58.25 15.53 -128.00 -1.99 -60.24 16 17 O -1.04 -58.38 15.11 -128.00 -1.93 -60.31 16 18 C -1.02 -56.62 10.29 67.73 0.70 -55.92 16 19 H 0.14 7.67 4.87 -2.91 -0.01 7.66 16 20 C 0.13 7.24 5.47 84.66 0.46 7.70 16 21 N -0.84 -47.14 13.96 21.45 0.30 -46.84 16 22 Si 0.81 42.84 26.38 68.60 1.81 44.65 16 23 H -0.25 -13.08 7.11 99.48 0.71 -12.37 16 24 H -0.23 -10.65 7.11 99.48 0.71 -9.94 16 25 H -0.25 -13.89 5.82 99.48 0.58 -13.32 16 26 H 0.12 2.41 8.14 -2.38 -0.02 2.39 16 27 H 0.07 1.49 7.66 -2.39 -0.02 1.47 16 28 H 0.04 1.15 7.66 -2.39 -0.02 1.13 16 29 H 0.13 4.18 6.30 -2.91 -0.02 4.17 16 30 H 0.12 4.08 8.06 -2.91 -0.02 4.06 16 31 H 0.13 3.96 8.06 -2.91 -0.02 3.94 16 32 H 0.14 3.83 7.76 -2.91 -0.02 3.81 16 33 H 0.10 2.13 6.16 -2.39 -0.01 2.11 16 34 H 0.10 2.30 7.94 -2.39 -0.02 2.28 16 35 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 36 H 0.08 1.67 7.82 -2.38 -0.02 1.65 16 37 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 39 H 0.06 1.89 7.80 -2.38 -0.02 1.87 16 40 H 0.10 2.23 5.80 -2.39 -0.01 2.22 16 41 H 0.28 14.69 8.31 -92.71 -0.77 13.92 16 Total: -1.00 -73.51 339.33 1.84 -71.66 By element: Atomic # 1 Polarization: 23.44 SS G_CDS: 0.91 Total: 24.34 kcal Atomic # 6 Polarization: -65.92 SS G_CDS: 5.27 Total: -60.65 kcal Atomic # 7 Polarization: -85.19 SS G_CDS: -1.12 Total: -86.31 kcal Atomic # 8 Polarization: -127.54 SS G_CDS: -4.79 Total: -132.33 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 1.81 Total: 44.65 kcal Atomic # 16 Polarization: 138.86 SS G_CDS: -0.23 Total: 138.63 kcal Total: -73.51 1.84 -71.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088203070.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.906 kcal (2) G-P(sol) polarization free energy of solvation -73.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.19 seconds