Wall clock time and date at job start Fri Apr 10 2020 22:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35900 * 117.00335 * 2 1 4 4 C 1.38758 * 120.05236 * 0.02562 * 3 2 1 5 5 C 1.38125 * 119.94214 * 179.72299 * 4 3 2 6 6 C 1.38288 * 120.05778 * 0.27343 * 5 4 3 7 7 C 1.38244 * 120.10843 * 0.02562 * 6 5 4 8 8 C 1.38163 * 120.05940 * 0.02562 * 7 6 5 9 9 C 1.50699 * 120.02903 * 179.97438 * 8 7 6 10 10 C 1.53002 * 109.47280 * 260.39944 * 9 8 7 11 11 H 1.08999 * 109.47127 * 305.72235 * 10 9 8 12 12 C 1.53000 * 109.46904 * 65.71855 * 10 9 8 13 13 N 1.46497 * 109.46871 * 185.72195 * 10 9 8 14 14 C 1.46499 * 120.00086 * 305.27554 * 13 10 9 15 15 S 1.65605 * 119.99998 * 125.28287 * 13 10 9 16 16 O 1.42102 * 106.40004 * 203.53500 * 15 13 10 17 17 O 1.42105 * 106.39996 * 336.45300 * 15 13 10 18 18 C 1.76193 * 107.21968 * 89.99286 * 15 13 10 19 19 H 1.08003 * 120.00414 * 0.02562 * 18 15 13 20 20 C 1.37881 * 120.00225 * 180.02562 * 18 15 13 21 21 N 1.31513 * 119.99767 * 359.97438 * 20 18 15 22 22 Si 1.86794 * 120.00281 * 180.02562 * 20 18 15 23 23 H 1.48509 * 109.47198 * 89.99810 * 22 20 18 24 24 H 1.48501 * 109.47414 * 209.99566 * 22 20 18 25 25 H 1.48502 * 109.47090 * 329.99898 * 22 20 18 26 26 H 1.08998 * 109.47224 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47016 * 300.00176 * 1 2 3 28 28 H 1.09008 * 109.46950 * 60.00025 * 1 2 3 29 29 H 1.08000 * 120.02894 * 359.97438 * 4 3 2 30 30 H 1.07999 * 119.97019 * 180.25871 * 5 4 3 31 31 H 1.07995 * 119.94755 * 180.02562 * 6 5 4 32 32 H 1.07999 * 119.97168 * 179.97438 * 7 6 5 33 33 H 1.08995 * 109.47397 * 20.40496 * 9 8 7 34 34 H 1.09006 * 109.47488 * 140.40101 * 9 8 7 35 35 H 1.08999 * 109.46917 * 60.00252 * 12 10 9 36 36 H 1.09002 * 109.46968 * 180.02562 * 12 10 9 37 37 H 1.08999 * 109.47157 * 300.00085 * 12 10 9 38 38 H 1.08995 * 109.47644 * 85.39979 * 14 13 10 39 39 H 1.09004 * 109.47004 * 205.40143 * 14 13 10 40 40 H 1.09002 * 109.47123 * 325.39237 * 14 13 10 41 41 H 0.96992 * 120.00114 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9209 3.6047 0.0063 6 6 3.3020 3.6758 0.0059 7 6 4.0560 2.5171 -0.0009 8 6 3.4311 1.2848 -0.0078 9 6 4.2537 0.0222 -0.0158 10 6 4.3297 -0.5281 -1.4414 11 1 3.3217 -0.6517 -1.8373 12 6 5.1081 0.4492 -2.3244 13 7 5.0117 -1.8245 -1.4287 14 6 6.3441 -1.9454 -0.8317 15 16 4.2767 -3.1534 -2.0893 16 8 4.8646 -4.2877 -1.4673 17 8 2.8802 -2.8916 -2.0678 18 6 4.7447 -3.2183 -3.7867 19 1 5.4000 -2.4634 -4.1956 20 6 4.2742 -4.2329 -4.5932 21 7 3.4766 -5.1524 -4.0954 22 14 4.7709 -4.3022 -6.3926 23 1 6.0135 -5.1033 -6.5327 24 1 3.6833 -4.9335 -7.1824 25 1 5.0109 -2.9249 -6.8933 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 0.2128 2.3204 0.0005 30 1 1.3340 4.5113 0.0110 31 1 3.7923 4.6380 0.0108 32 1 5.1344 2.5752 -0.0017 33 1 5.2593 0.2414 0.3432 34 1 3.7890 -0.7184 0.6352 35 1 6.1161 0.5728 -1.9285 36 1 5.1618 0.0574 -3.3402 37 1 4.6006 1.4138 -2.3338 38 1 6.2479 -2.1102 0.2415 39 1 6.8694 -2.7873 -1.2828 40 1 6.9065 -1.0288 -1.0096 41 1 3.1460 -5.8663 -4.6626 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088203071.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:50:57 Heat of formation + Delta-G solvation = -105.922484 kcal Electronic energy + Delta-G solvation = -25038.713865 eV Core-core repulsion = 21431.434815 eV Total energy + Delta-G solvation = -3607.279050 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.118 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.21268 -37.50731 -36.63078 -35.16658 -33.84571 -33.04811 -32.61741 -30.08615 -29.65198 -27.24772 -26.43477 -26.01725 -25.53711 -22.05272 -21.91467 -19.98702 -18.55754 -17.82974 -17.33919 -16.26627 -16.09677 -15.63417 -15.52042 -15.05164 -14.88811 -14.44261 -14.19858 -13.77140 -13.44429 -13.34526 -13.27123 -12.70731 -12.56567 -12.29761 -11.95578 -11.83224 -11.73026 -11.68407 -11.44717 -11.18961 -11.15893 -11.00241 -10.83397 -10.73598 -10.57854 -10.48838 -10.17844 -9.98704 -9.91133 -9.19764 -8.89968 -8.77001 -8.20154 -7.90133 -6.63873 -5.25307 1.34790 1.50009 2.37510 3.09359 3.15891 3.22755 3.46493 3.79755 4.10038 4.59540 4.69422 4.83254 4.85003 5.06408 5.16509 5.28529 5.30755 5.39831 5.50141 5.57761 5.65880 5.68801 5.75701 5.82574 5.91404 5.93665 5.98639 6.14728 6.19265 6.28437 6.33242 6.38733 6.48389 6.49430 6.55228 6.62141 6.75369 6.85574 7.00025 7.38342 7.54848 7.73754 8.04122 8.94793 10.29432 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.018223 B = 0.004429 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.189680 B = 6320.923126 C = 6567.825957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.299 6.299 3 C 0.134 3.866 4 C -0.211 4.211 5 C -0.089 4.089 6 C -0.162 4.162 7 C -0.078 4.078 8 C -0.104 4.104 9 C -0.078 4.078 10 C 0.156 3.844 11 H 0.103 0.897 12 C -0.164 4.164 13 N -1.011 6.011 14 C 0.100 3.900 15 S 2.714 3.286 16 O -1.006 7.006 17 O -0.999 6.999 18 C -1.020 5.020 19 H 0.101 0.899 20 C 0.133 3.867 21 N -0.847 5.847 22 Si 0.918 3.082 23 H -0.267 1.267 24 H -0.275 1.275 25 H -0.263 1.263 26 H 0.103 0.897 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.126 0.874 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.127 0.873 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.054 0.946 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.042 0.958 39 H 0.072 0.928 40 H 0.056 0.944 41 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.967 15.979 6.972 17.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.212 6.212 3 C 0.088 3.912 4 C -0.229 4.229 5 C -0.107 4.107 6 C -0.180 4.180 7 C -0.096 4.096 8 C -0.106 4.106 9 C -0.117 4.117 10 C 0.049 3.951 11 H 0.121 0.879 12 C -0.222 4.222 13 N -0.845 5.845 14 C -0.046 4.046 15 S 2.815 3.185 16 O -0.997 6.997 17 O -0.990 6.990 18 C -1.154 5.154 19 H 0.119 0.881 20 C -0.084 4.084 21 N -0.477 5.477 22 Si 0.742 3.258 23 H -0.192 1.192 24 H -0.200 1.200 25 H -0.187 1.187 26 H 0.121 0.879 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.144 0.856 30 H 0.137 0.863 31 H 0.138 0.862 32 H 0.145 0.855 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.061 0.939 39 H 0.091 0.909 40 H 0.075 0.925 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.549 15.002 7.463 16.827 hybrid contribution 0.289 0.378 -1.498 1.572 sum -1.260 15.380 5.964 16.544 Atomic orbital electron populations 1.23067 0.78562 1.04386 1.00623 1.86257 1.21155 1.25964 1.87802 1.18999 0.92000 0.84623 0.95612 1.21223 0.99957 0.92402 1.09352 1.20858 0.94684 0.96726 0.98422 1.20975 0.93896 0.98172 1.04967 1.20890 0.99777 0.90940 0.98028 1.19258 0.90596 0.95887 1.04843 1.20799 0.98711 0.93828 0.98392 1.20618 0.97350 0.83101 0.94006 0.87876 1.22217 1.00201 0.99096 1.00725 1.57973 1.27533 1.23954 1.75056 1.21207 0.84151 1.01698 0.97525 1.00545 0.72451 0.70031 0.75485 1.93349 1.78921 1.48565 1.78841 1.93353 1.32287 1.84299 1.89032 1.30679 1.43720 1.20441 1.20515 0.88059 1.24742 0.90583 0.92123 1.00995 1.69901 1.27160 1.11960 1.38640 0.86207 0.78978 0.79339 0.81279 1.19211 1.20003 1.18695 0.87884 0.93164 0.92709 0.85642 0.86256 0.86243 0.85505 0.90995 0.90275 0.92674 0.91817 0.92187 0.93903 0.90933 0.92514 0.89995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.81 101.05 0.99 1.34 16 2 O -0.30 -4.96 9.70 -19.43 -0.19 -5.15 16 3 C 0.13 2.00 6.66 -39.21 -0.26 1.73 16 4 C -0.21 -2.58 9.04 -39.43 -0.36 -2.94 16 5 C -0.09 -0.95 10.04 -39.60 -0.40 -1.35 16 6 C -0.16 -1.72 10.04 -39.56 -0.40 -2.12 16 7 C -0.08 -0.92 8.73 -39.61 -0.35 -1.27 16 8 C -0.10 -1.51 4.46 -104.47 -0.47 -1.97 16 9 C -0.08 -1.23 4.30 -27.88 -0.12 -1.35 16 10 C 0.16 2.90 2.72 -67.93 -0.19 2.71 16 11 H 0.10 2.21 6.83 -51.93 -0.35 1.85 16 12 C -0.16 -2.55 8.98 37.16 0.33 -2.22 16 13 N -1.01 -21.27 3.07 -114.61 -0.35 -21.63 16 14 C 0.10 1.74 9.35 59.85 0.56 2.30 16 15 S 2.71 74.37 4.93 -107.50 -0.53 73.84 16 16 O -1.01 -30.17 17.00 -57.17 -0.97 -31.14 16 17 O -1.00 -29.73 16.54 -57.17 -0.95 -30.67 16 18 C -1.02 -28.74 9.75 30.60 0.30 -28.44 16 19 H 0.10 2.63 7.81 -52.48 -0.41 2.22 16 20 C 0.13 3.78 5.46 -17.82 -0.10 3.69 16 21 N -0.85 -25.33 13.19 55.43 0.73 -24.59 16 22 Si 0.92 20.92 29.54 -169.99 -5.02 15.90 16 23 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 24 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 25 H -0.26 -5.78 7.11 56.52 0.40 -5.38 16 26 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 28 H 0.05 0.60 7.66 -51.92 -0.40 0.21 16 29 H 0.13 1.28 6.30 -52.49 -0.33 0.95 16 30 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 31 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 32 H 0.13 1.24 8.04 -52.49 -0.42 0.82 16 33 H 0.07 0.96 7.63 -51.93 -0.40 0.56 16 34 H 0.08 1.37 7.83 -51.93 -0.41 0.96 16 35 H 0.05 0.74 6.88 -51.93 -0.36 0.38 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.06 0.84 6.76 -51.93 -0.35 0.49 16 38 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.07 1.32 7.62 -51.93 -0.40 0.93 16 40 H 0.06 0.79 6.72 -51.93 -0.35 0.44 16 41 H 0.29 7.78 8.31 -40.82 -0.34 7.44 16 LS Contribution 351.24 15.07 5.29 5.29 Total: -1.00 -36.09 351.24 -8.25 -44.34 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -5.82 Total: 3.69 kcal Atomic # 6 Polarization: -29.43 SS G_CDS: -0.44 Total: -29.88 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: 0.38 Total: -46.22 kcal Atomic # 8 Polarization: -64.86 SS G_CDS: -2.11 Total: -66.96 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: 74.37 SS G_CDS: -0.53 Total: 73.84 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -36.09 -8.25 -44.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088203071.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.584 kcal (2) G-P(sol) polarization free energy of solvation -36.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds