Wall clock time and date at job start Fri Apr 10 2020 22:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35893 * 116.99670 * 2 1 4 4 C 1.39021 * 119.85099 * 0.02562 * 3 2 1 5 5 C 1.37889 * 120.39324 * 180.27540 * 4 3 2 6 6 C 1.39327 * 120.07615 * 359.44666 * 5 4 3 7 7 C 1.48023 * 120.15525 * 180.30098 * 6 5 4 8 8 C 1.39425 * 120.17103 * 64.99391 * 7 6 5 9 9 C 1.37965 * 119.92769 * 179.70289 * 8 7 6 10 10 C 1.38484 * 120.28700 * 0.57538 * 9 8 7 11 11 C 1.38098 * 120.35701 * 359.72585 * 10 9 8 12 12 C 1.38760 * 120.05441 * 359.97227 * 11 10 9 13 13 O 1.35637 * 120.14099 * 179.97438 * 12 11 10 14 14 C 1.34811 * 117.00118 * 354.39872 * 13 12 11 15 15 H 1.07995 * 119.99608 * 5.06067 * 14 13 12 16 16 C 1.38660 * 119.99903 * 185.06043 * 14 13 12 17 17 N 1.31551 * 120.00096 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 119.99795 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47432 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.46976 * 119.99872 * 18 16 14 21 21 H 1.48504 * 109.47223 * 239.99850 * 18 16 14 22 22 C 1.40700 * 119.69133 * 0.56923 * 6 5 4 23 23 C 1.47600 * 120.19093 * 179.68561 * 22 6 5 24 24 N 1.34773 * 119.99949 * 180.02562 * 23 22 6 25 25 O 1.21585 * 119.99751 * 0.02562 * 23 22 6 26 26 C 1.38440 * 119.84787 * 180.02562 * 3 2 1 27 27 H 1.09006 * 109.47201 * 59.99792 * 1 2 3 28 28 H 1.08993 * 109.47012 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47048 * 299.99698 * 1 2 3 30 30 H 1.08000 * 119.80293 * 359.97438 * 4 3 2 31 31 H 1.07999 * 119.96445 * 179.70128 * 5 4 3 32 32 H 1.07990 * 120.03378 * 0.02562 * 8 7 6 33 33 H 1.07995 * 119.85583 * 180.32481 * 9 8 7 34 34 H 1.08007 * 119.81784 * 179.74255 * 10 9 8 35 35 H 1.07999 * 119.97381 * 179.97438 * 11 10 9 36 36 H 0.96993 * 119.99929 * 180.02562 * 17 16 14 37 37 H 0.96998 * 120.00013 * 0.02562 * 24 23 22 38 38 H 0.97007 * 119.99582 * 179.97438 * 24 23 22 39 39 H 1.08010 * 120.04119 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2857 2.3748 0.0005 5 6 1.8999 3.6093 -0.0052 6 6 3.2904 3.6973 0.0001 7 6 3.9516 5.0217 0.0007 8 6 3.8045 5.8778 1.0913 9 6 4.4280 7.1085 1.0892 10 6 5.1907 7.5033 0.0027 11 6 5.3392 6.6672 -1.0863 12 6 4.7236 5.4237 -1.0969 13 8 4.8680 4.6014 -2.1659 14 6 5.5251 5.0958 -3.2341 15 1 5.9796 6.0741 -3.1831 16 6 5.6173 4.3482 -4.3983 17 7 5.0640 3.1563 -4.4602 18 14 6.5272 5.0336 -5.8787 19 1 7.0540 6.3837 -5.5545 20 1 7.6547 4.1324 -6.2275 21 1 5.5957 5.1300 -7.0313 22 6 4.0632 2.5215 -0.0009 23 6 5.5370 2.6020 -0.0023 24 7 6.2735 1.4733 -0.0038 25 8 6.0866 3.6865 -0.0022 26 6 3.4286 1.2797 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.2075 2.3117 0.0005 31 1 1.3026 4.5090 -0.0096 32 1 3.2074 5.5758 1.9389 33 1 4.3176 7.7686 1.9368 34 1 5.6721 8.4701 0.0074 35 1 5.9351 6.9815 -1.9305 36 1 5.1288 2.6333 -5.2745 37 1 5.8350 0.6081 -0.0042 38 1 7.2421 1.5262 -0.0051 39 1 4.0152 0.3728 -0.0014 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243587724.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:51:44 Heat of formation + Delta-G solvation = -37.247133 kcal Electronic energy + Delta-G solvation = -26184.331263 eV Core-core repulsion = 22444.586249 eV Total energy + Delta-G solvation = -3739.745014 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.115 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.19057 -39.03927 -38.28825 -36.70516 -35.97918 -33.31685 -32.17268 -31.38598 -30.68651 -28.97907 -28.21349 -26.82845 -25.20479 -23.55579 -22.72762 -21.24161 -20.71261 -19.87842 -18.21454 -17.78991 -16.99476 -16.55428 -16.11800 -15.63158 -15.52947 -15.35900 -14.54866 -14.44183 -14.12896 -13.88859 -13.65577 -13.52654 -13.26288 -13.12367 -12.81805 -12.47440 -12.22044 -12.13696 -11.78003 -11.57285 -11.23489 -10.90064 -10.87279 -10.72545 -10.54535 -10.44361 -10.33079 -9.45599 -9.17617 -9.05717 -8.69231 -8.66612 -8.07587 -7.61577 -6.84224 -6.33791 -3.89417 1.24493 1.67552 2.39021 2.63703 3.18115 3.19213 3.24307 3.36577 3.47672 4.04898 4.07085 4.37428 4.73926 4.96363 5.03791 5.14638 5.18690 5.26286 5.34480 5.41368 5.43537 5.59080 5.65704 5.79497 5.81994 5.98355 6.18045 6.19147 6.42107 6.49863 6.54273 6.85390 6.87303 6.90351 7.06215 7.23917 7.34542 7.38710 7.53215 7.56178 7.60050 7.89981 8.01164 8.12165 8.93525 9.12847 9.87709 10.84091 Molecular weight = 313.11amu Principal moments of inertia in cm(-1) A = 0.010933 B = 0.005973 C = 0.004750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2560.509006 B = 4686.974217 C = 5893.893652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.320 6.320 3 C 0.106 3.894 4 C -0.183 4.183 5 C -0.081 4.081 6 C 0.018 3.982 7 C -0.125 4.125 8 C -0.062 4.062 9 C -0.220 4.220 10 C -0.069 4.069 11 C -0.236 4.236 12 C 0.210 3.790 13 O -0.165 6.165 14 C -0.383 4.383 15 H 0.089 0.911 16 C 0.039 3.961 17 N -0.862 5.862 18 Si 0.936 3.064 19 H -0.268 1.268 20 H -0.278 1.278 21 H -0.278 1.278 22 C -0.075 4.075 23 C 0.567 3.433 24 N -0.857 5.857 25 O -0.500 6.500 26 C -0.117 4.117 27 H 0.055 0.945 28 H 0.096 0.904 29 H 0.053 0.947 30 H 0.127 0.873 31 H 0.130 0.870 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.124 0.876 36 H 0.265 0.735 37 H 0.394 0.606 38 H 0.400 0.600 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.412 -4.740 9.265 12.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.062 3.938 4 C -0.202 4.202 5 C -0.100 4.100 6 C 0.017 3.983 7 C -0.126 4.126 8 C -0.080 4.080 9 C -0.239 4.239 10 C -0.087 4.087 11 C -0.255 4.255 12 C 0.155 3.845 13 O -0.067 6.067 14 C -0.459 4.459 15 H 0.106 0.894 16 C -0.165 4.165 17 N -0.497 5.497 18 Si 0.761 3.239 19 H -0.192 1.192 20 H -0.204 1.204 21 H -0.203 1.203 22 C -0.078 4.078 23 C 0.352 3.648 24 N -0.422 5.422 25 O -0.374 6.374 26 C -0.137 4.137 27 H 0.073 0.927 28 H 0.114 0.886 29 H 0.071 0.929 30 H 0.145 0.855 31 H 0.148 0.852 32 H 0.126 0.874 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.141 0.859 36 H 0.075 0.925 37 H 0.223 0.777 38 H 0.230 0.770 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.230 -4.550 9.031 11.877 hybrid contribution 0.487 -0.007 -0.955 1.072 sum -5.743 -4.557 8.076 10.907 Atomic orbital electron populations 1.23000 0.78854 1.03503 1.01297 1.86029 1.21014 1.27008 1.89367 1.18727 0.91898 0.84049 0.99176 1.21203 0.99706 0.92227 1.07065 1.20991 0.93466 0.97011 0.98494 1.18556 0.91951 0.91884 0.95899 1.17540 1.05192 0.94003 0.95863 1.20552 0.98423 0.93368 0.95658 1.20374 1.05991 0.97885 0.99656 1.20731 0.96890 0.97877 0.93251 1.21014 1.07545 0.96073 1.00862 1.19039 0.89516 0.88286 0.87643 1.83919 1.65713 1.36620 1.20457 1.21332 1.32059 1.03289 0.89263 0.89389 1.25195 0.97620 0.95649 0.97993 1.70054 1.41954 1.09992 1.27747 0.85724 0.78831 0.78901 0.80443 1.19195 1.20364 1.20329 1.19701 0.93167 0.92458 1.02509 1.17938 0.86860 0.84169 0.75848 1.43695 1.10390 1.08552 1.79563 1.90885 1.72680 1.26993 1.46840 1.20323 0.91570 0.97167 1.04605 0.92660 0.88595 0.92867 0.85478 0.85240 0.87446 0.87887 0.87891 0.85864 0.92471 0.77748 0.76985 0.85316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.32 -4.50 10.49 -19.40 -0.20 -4.70 16 3 C 0.11 1.70 6.68 -39.22 -0.26 1.44 16 4 C -0.18 -2.80 9.01 -39.42 -0.36 -3.16 16 5 C -0.08 -1.43 9.72 -39.30 -0.38 -1.81 16 6 C 0.02 0.38 4.97 -104.55 -0.52 -0.14 16 7 C -0.12 -2.81 3.93 -104.75 -0.41 -3.23 16 8 C -0.06 -1.22 9.73 -39.24 -0.38 -1.60 16 9 C -0.22 -4.19 10.03 -39.59 -0.40 -4.59 16 10 C -0.07 -1.40 10.03 -39.54 -0.40 -1.80 16 11 C -0.24 -5.60 9.16 -39.44 -0.36 -5.97 16 12 C 0.21 5.39 4.48 -38.70 -0.17 5.22 16 13 O -0.16 -4.78 7.92 -18.41 -0.15 -4.93 16 14 C -0.38 -11.05 9.49 30.89 0.29 -10.76 16 15 H 0.09 2.42 5.21 -52.49 -0.27 2.14 16 16 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 17 N -0.86 -25.45 13.67 55.48 0.76 -24.69 16 18 Si 0.94 21.26 29.55 -169.99 -5.02 16.23 16 19 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 20 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 21 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 22 C -0.08 -1.52 5.69 -104.69 -0.60 -2.12 16 23 C 0.57 11.99 7.54 -12.44 -0.09 11.89 16 24 N -0.86 -13.76 8.82 30.47 0.27 -13.49 16 25 O -0.50 -12.50 12.95 -13.57 -0.18 -12.68 16 26 C -0.12 -2.02 9.47 -39.05 -0.37 -2.39 16 27 H 0.05 0.51 7.65 -51.93 -0.40 0.12 16 28 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.44 7.65 -51.93 -0.40 0.04 16 30 H 0.13 1.51 6.26 -52.49 -0.33 1.18 16 31 H 0.13 2.01 8.06 -52.49 -0.42 1.58 16 32 H 0.11 1.80 8.06 -52.49 -0.42 1.37 16 33 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 34 H 0.10 1.77 8.06 -52.48 -0.42 1.34 16 35 H 0.12 2.94 5.64 -52.49 -0.30 2.64 16 36 H 0.27 7.24 8.31 -40.82 -0.34 6.91 16 37 H 0.39 5.05 6.86 -40.82 -0.28 4.77 16 38 H 0.40 5.80 8.93 -40.82 -0.36 5.44 16 39 H 0.13 1.84 6.40 -52.48 -0.34 1.51 16 LS Contribution 333.24 15.07 5.02 5.02 Total: -1.00 -35.53 333.24 -6.93 -42.47 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -3.92 Total: 13.49 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: -3.51 Total: -16.73 kcal Atomic # 7 Polarization: -39.20 SS G_CDS: 1.03 Total: -38.18 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.53 Total: -22.31 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -35.53 -6.93 -42.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243587724.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.219 kcal (2) G-P(sol) polarization free energy of solvation -35.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds