Wall clock time and date at job start Fri Apr 10 2020 22:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35893 * 116.99670 * 2 1 4 4 C 1.39021 * 119.85099 * 0.02562 * 3 2 1 5 5 C 1.37889 * 120.39324 * 180.27540 * 4 3 2 6 6 C 1.39327 * 120.07615 * 359.44666 * 5 4 3 7 7 C 1.48023 * 120.15525 * 180.30098 * 6 5 4 8 8 C 1.39425 * 120.17103 * 64.99391 * 7 6 5 9 9 C 1.37965 * 119.92769 * 179.70289 * 8 7 6 10 10 C 1.38484 * 120.28700 * 0.57538 * 9 8 7 11 11 C 1.38098 * 120.35701 * 359.72585 * 10 9 8 12 12 C 1.38760 * 120.05441 * 359.97227 * 11 10 9 13 13 O 1.35637 * 120.14099 * 179.97438 * 12 11 10 14 14 C 1.34811 * 117.00118 * 354.39872 * 13 12 11 15 15 H 1.07995 * 119.99608 * 5.06067 * 14 13 12 16 16 C 1.38660 * 119.99903 * 185.06043 * 14 13 12 17 17 N 1.31551 * 120.00096 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 119.99795 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47432 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.46976 * 119.99872 * 18 16 14 21 21 H 1.48504 * 109.47223 * 239.99850 * 18 16 14 22 22 C 1.40700 * 119.69133 * 0.56923 * 6 5 4 23 23 C 1.47600 * 120.19093 * 179.68561 * 22 6 5 24 24 N 1.34773 * 119.99949 * 180.02562 * 23 22 6 25 25 O 1.21585 * 119.99751 * 0.02562 * 23 22 6 26 26 C 1.38440 * 119.84787 * 180.02562 * 3 2 1 27 27 H 1.09006 * 109.47201 * 59.99792 * 1 2 3 28 28 H 1.08993 * 109.47012 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47048 * 299.99698 * 1 2 3 30 30 H 1.08000 * 119.80293 * 359.97438 * 4 3 2 31 31 H 1.07999 * 119.96445 * 179.70128 * 5 4 3 32 32 H 1.07990 * 120.03378 * 0.02562 * 8 7 6 33 33 H 1.07995 * 119.85583 * 180.32481 * 9 8 7 34 34 H 1.08007 * 119.81784 * 179.74255 * 10 9 8 35 35 H 1.07999 * 119.97381 * 179.97438 * 11 10 9 36 36 H 0.96993 * 119.99929 * 180.02562 * 17 16 14 37 37 H 0.96998 * 120.00013 * 0.02562 * 24 23 22 38 38 H 0.97007 * 119.99582 * 179.97438 * 24 23 22 39 39 H 1.08010 * 120.04119 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2857 2.3748 0.0005 5 6 1.8999 3.6093 -0.0052 6 6 3.2904 3.6973 0.0001 7 6 3.9516 5.0217 0.0007 8 6 3.8045 5.8778 1.0913 9 6 4.4280 7.1085 1.0892 10 6 5.1907 7.5033 0.0027 11 6 5.3392 6.6672 -1.0863 12 6 4.7236 5.4237 -1.0969 13 8 4.8680 4.6014 -2.1659 14 6 5.5251 5.0958 -3.2341 15 1 5.9796 6.0741 -3.1831 16 6 5.6173 4.3482 -4.3983 17 7 5.0640 3.1563 -4.4602 18 14 6.5272 5.0336 -5.8787 19 1 7.0540 6.3837 -5.5545 20 1 7.6547 4.1324 -6.2275 21 1 5.5957 5.1300 -7.0313 22 6 4.0632 2.5215 -0.0009 23 6 5.5370 2.6020 -0.0023 24 7 6.2735 1.4733 -0.0038 25 8 6.0866 3.6865 -0.0022 26 6 3.4286 1.2797 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.2075 2.3117 0.0005 31 1 1.3026 4.5090 -0.0096 32 1 3.2074 5.5758 1.9389 33 1 4.3176 7.7686 1.9368 34 1 5.6721 8.4701 0.0074 35 1 5.9351 6.9815 -1.9305 36 1 5.1288 2.6333 -5.2745 37 1 5.8350 0.6081 -0.0042 38 1 7.2421 1.5262 -0.0051 39 1 4.0152 0.3728 -0.0014 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243587724.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:51:43 Heat of formation + Delta-G solvation = -62.210790 kcal Electronic energy + Delta-G solvation = -26185.413769 eV Core-core repulsion = 22444.586249 eV Total energy + Delta-G solvation = -3740.827520 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.115 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.58932 -40.48381 -39.89957 -38.21813 -37.56801 -34.83443 -34.20159 -32.87049 -32.00698 -30.60242 -29.60192 -27.93138 -27.20712 -24.93419 -24.16914 -22.97983 -22.24220 -21.28899 -19.69742 -19.53319 -18.71981 -17.95242 -17.41394 -17.09602 -16.65278 -16.62090 -16.30341 -16.18481 -15.67569 -15.55685 -15.32985 -15.00380 -14.74747 -14.56153 -14.37393 -14.16660 -13.54567 -13.35528 -13.23643 -13.12325 -12.96929 -12.48662 -12.31400 -12.18663 -12.13183 -11.93829 -11.78479 -11.18327 -10.96865 -10.71872 -10.54362 -10.00397 -9.61042 -9.08333 -8.56446 -8.40010 -6.03079 -0.15098 0.29706 0.76658 0.96663 1.32396 1.41070 1.49114 2.00764 2.19271 2.30162 2.69792 2.88705 2.96461 3.30963 3.64083 3.78069 3.87202 3.91341 4.22916 4.29242 4.31829 4.36008 4.47017 4.49122 4.50503 4.65744 4.77228 4.80432 4.89973 5.04035 5.17796 5.21829 5.23382 5.45216 5.48663 5.58072 5.77680 5.82473 5.87525 5.98210 6.11574 6.36539 6.42284 6.53505 7.05282 7.46146 7.92714 8.82050 Molecular weight = 313.11amu Principal moments of inertia in cm(-1) A = 0.010933 B = 0.005973 C = 0.004750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2560.509006 B = 4686.974217 C = 5893.893652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.329 6.329 3 C 0.111 3.889 4 C -0.173 4.173 5 C -0.086 4.086 6 C -0.021 4.021 7 C -0.125 4.125 8 C -0.067 4.067 9 C -0.201 4.201 10 C -0.074 4.074 11 C -0.262 4.262 12 C 0.174 3.826 13 O -0.203 6.203 14 C -0.406 4.406 15 H 0.087 0.913 16 C -0.017 4.017 17 N -0.909 5.909 18 Si 1.008 2.992 19 H -0.259 1.259 20 H -0.270 1.270 21 H -0.267 1.267 22 C -0.100 4.100 23 C 0.555 3.445 24 N -0.837 5.837 25 O -0.550 6.550 26 C -0.125 4.125 27 H 0.059 0.941 28 H 0.123 0.877 29 H 0.072 0.928 30 H 0.167 0.833 31 H 0.146 0.854 32 H 0.142 0.858 33 H 0.147 0.853 34 H 0.136 0.864 35 H 0.107 0.893 36 H 0.268 0.732 37 H 0.410 0.590 38 H 0.407 0.593 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.181 -4.813 10.667 14.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.243 6.243 3 C 0.066 3.934 4 C -0.191 4.191 5 C -0.104 4.104 6 C -0.022 4.022 7 C -0.126 4.126 8 C -0.085 4.085 9 C -0.220 4.220 10 C -0.092 4.092 11 C -0.281 4.281 12 C 0.122 3.878 13 O -0.108 6.108 14 C -0.483 4.483 15 H 0.104 0.896 16 C -0.215 4.215 17 N -0.548 5.548 18 Si 0.829 3.171 19 H -0.183 1.183 20 H -0.195 1.195 21 H -0.192 1.192 22 C -0.104 4.104 23 C 0.341 3.659 24 N -0.403 5.403 25 O -0.428 6.428 26 C -0.145 4.145 27 H 0.078 0.922 28 H 0.141 0.859 29 H 0.090 0.910 30 H 0.184 0.816 31 H 0.164 0.836 32 H 0.159 0.841 33 H 0.165 0.835 34 H 0.154 0.846 35 H 0.125 0.875 36 H 0.077 0.923 37 H 0.242 0.758 38 H 0.238 0.762 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -8.013 -4.650 10.482 13.989 hybrid contribution 0.871 -0.028 -1.112 1.412 sum -7.142 -4.677 9.370 12.676 Atomic orbital electron populations 1.23405 0.76258 1.05814 1.02411 1.86036 1.23634 1.25771 1.88822 1.18838 0.91716 0.85206 0.97660 1.21582 1.01625 0.90995 1.04938 1.21210 0.92282 0.98753 0.98126 1.18781 0.93526 0.91376 0.98509 1.17973 1.04046 0.95271 0.95318 1.21044 0.98516 0.93284 0.95693 1.20937 1.03241 0.97848 0.99936 1.21104 0.97027 0.98678 0.92428 1.21148 1.08262 0.96728 1.01993 1.19582 0.91124 0.89024 0.88038 1.83889 1.67503 1.38066 1.21337 1.21698 1.32737 1.03609 0.90269 0.89606 1.26319 0.98489 0.95933 1.00727 1.70185 1.44271 1.11567 1.28766 0.84673 0.77647 0.78466 0.76327 1.18329 1.19542 1.19159 1.19780 0.92706 0.93682 1.04203 1.18356 0.87834 0.84419 0.75303 1.43500 1.10722 1.08301 1.77756 1.90843 1.73633 1.28862 1.49507 1.20534 0.92805 0.96819 1.04292 0.92201 0.85930 0.90951 0.81574 0.83594 0.84071 0.83537 0.84615 0.87492 0.92302 0.75820 0.76167 0.83258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.35 16 2 O -0.33 -8.33 10.49 -92.35 -0.97 -9.30 16 3 C 0.11 3.36 6.68 22.51 0.15 3.51 16 4 C -0.17 -4.88 9.01 22.37 0.20 -4.68 16 5 C -0.09 -2.91 9.72 22.45 0.22 -2.69 16 6 C -0.02 -0.87 4.97 -19.82 -0.10 -0.97 16 7 C -0.12 -5.74 3.93 -19.95 -0.08 -5.82 16 8 C -0.07 -2.56 9.73 22.49 0.22 -2.34 16 9 C -0.20 -7.15 10.03 22.26 0.22 -6.92 16 10 C -0.07 -2.95 10.03 22.30 0.22 -2.73 16 11 C -0.26 -12.97 9.16 22.36 0.20 -12.77 16 12 C 0.17 9.36 4.48 22.84 0.10 9.47 16 13 O -0.20 -12.52 7.92 -3.27 -0.03 -12.54 16 14 C -0.41 -24.90 9.49 67.92 0.64 -24.25 16 15 H 0.09 5.05 5.21 -2.91 -0.02 5.04 16 16 C -0.02 -1.00 5.49 84.84 0.47 -0.53 16 17 N -0.91 -56.15 13.67 21.61 0.30 -55.86 16 18 Si 1.01 45.11 29.55 68.60 2.03 47.14 16 19 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 20 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 21 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 22 C -0.10 -4.17 5.69 -19.91 -0.11 -4.28 16 23 C 0.55 24.50 7.54 86.71 0.65 25.15 16 24 N -0.84 -27.67 8.82 -175.77 -1.55 -29.22 16 25 O -0.55 -29.08 12.95 14.05 0.18 -28.90 16 26 C -0.13 -4.26 9.47 22.61 0.21 -4.04 16 27 H 0.06 0.90 7.65 -2.38 -0.02 0.88 16 28 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.07 0.87 7.65 -2.39 -0.02 0.85 16 30 H 0.17 3.27 6.26 -2.91 -0.02 3.25 16 31 H 0.15 4.29 8.06 -2.91 -0.02 4.27 16 32 H 0.14 4.32 8.06 -2.92 -0.02 4.30 16 33 H 0.15 3.95 8.06 -2.91 -0.02 3.92 16 34 H 0.14 4.38 8.06 -2.91 -0.02 4.36 16 35 H 0.11 5.46 5.64 -2.91 -0.02 5.45 16 36 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 37 H 0.41 10.55 6.86 -92.71 -0.64 9.91 16 38 H 0.41 12.23 8.93 -92.70 -0.83 11.40 16 39 H 0.15 4.18 6.40 -2.91 -0.02 4.16 16 Total: -1.00 -83.59 333.24 3.97 -79.62 By element: Atomic # 1 Polarization: 41.94 SS G_CDS: -0.33 Total: 41.61 kcal Atomic # 6 Polarization: -36.89 SS G_CDS: 4.34 Total: -32.55 kcal Atomic # 7 Polarization: -83.83 SS G_CDS: -1.26 Total: -85.08 kcal Atomic # 8 Polarization: -49.93 SS G_CDS: -0.81 Total: -50.75 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -83.59 3.97 -79.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243587724.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.412 kcal (2) G-P(sol) polarization free energy of solvation -83.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds