Wall clock time and date at job start Fri Apr 10 2020 22:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99469 * 2 1 4 4 H 1.48499 * 109.47044 * 269.99441 * 3 2 1 5 5 H 1.48496 * 109.47525 * 29.99841 * 3 2 1 6 6 H 1.48502 * 109.47040 * 150.00103 * 3 2 1 7 7 C 1.37875 * 120.00210 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99745 * 166.26930 * 7 2 1 9 9 C 1.50695 * 119.99973 * 346.27053 * 7 2 1 10 10 C 1.53000 * 115.55201 * 324.65787 * 9 7 2 11 11 O 1.45206 * 109.46697 * 305.78020 * 10 9 7 12 12 C 1.34667 * 116.99598 * 179.37009 * 11 10 9 13 13 O 1.21436 * 120.00328 * 5.49151 * 12 11 10 14 14 C 1.48053 * 119.99873 * 185.49151 * 12 11 10 15 15 C 1.39981 * 120.89724 * 356.67676 * 14 12 11 16 16 C 1.38053 * 119.13384 * 180.02562 * 15 14 12 17 17 N 1.31841 * 120.98426 * 0.02562 * 16 15 14 18 18 C 1.32227 * 121.98837 * 359.97438 * 17 16 15 19 19 N 1.39835 * 119.62887 * 179.97438 * 18 17 16 20 20 C 1.35842 * 126.09813 * 0.02562 * 19 18 17 21 21 C 1.35283 * 107.61311 * 179.97438 * 20 19 18 22 22 C 1.39949 * 107.96959 * 0.02562 * 21 20 19 23 23 N 1.30828 * 108.36865 * 0.22544 * 22 21 20 24 24 C 1.38914 * 120.75108 * 0.26256 * 18 17 16 25 25 C 1.53003 * 117.49718 * 110.32389 * 9 7 2 26 26 C 1.53000 * 117.49690 * 178.98329 * 9 7 2 27 27 H 0.96999 * 119.99965 * 5.08770 * 1 2 3 28 28 H 1.09000 * 109.47019 * 185.78310 * 10 9 7 29 29 H 1.08994 * 109.47358 * 65.78270 * 10 9 7 30 30 H 1.08004 * 120.43837 * 0.02562 * 15 14 12 31 31 H 1.08001 * 119.51246 * 180.02562 * 16 15 14 32 32 H 1.08002 * 126.19491 * 0.02562 * 20 19 18 33 33 H 1.07999 * 126.01658 * 179.97438 * 21 20 19 34 34 H 1.07999 * 125.82040 * 179.97438 * 22 21 20 35 35 H 1.08007 * 120.53023 * 179.74453 * 24 18 17 36 36 H 1.08997 * 117.50167 * 214.99936 * 25 9 7 37 37 H 1.09000 * 117.49655 * 0.02741 * 25 9 7 38 38 H 1.08997 * 117.50176 * 359.97438 * 26 9 7 39 39 H 1.09000 * 117.49643 * 144.97474 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0614 -1.2074 -0.2215 9 6 1.2834 -2.4803 0.3108 10 6 0.1705 -2.3774 1.3557 11 8 0.6994 -1.7798 2.5688 12 6 -0.1612 -1.6052 3.5897 13 8 -1.2950 -2.0324 3.5080 14 6 0.2749 -0.8924 4.8119 15 6 1.5962 -0.4530 4.9549 16 6 1.9636 0.2076 6.1101 17 7 1.0905 0.4271 7.0733 18 6 -0.1675 0.0303 6.9822 19 7 -1.0518 0.2888 8.0341 20 6 -0.7515 0.9314 9.1926 21 6 -1.8782 0.9758 9.9401 22 6 -2.8984 0.3425 9.2213 23 7 -2.4042 -0.0733 8.0836 24 6 -0.6193 -0.6456 5.8558 25 6 1.0862 -3.4740 -0.8358 26 6 2.0988 -3.7743 0.2722 27 1 -0.4850 0.8367 -0.0745 28 1 -0.2120 -3.3735 1.5783 29 1 -0.6367 -1.7568 0.9669 30 1 2.3189 -0.6283 4.1717 31 1 2.9813 0.5497 6.2266 32 1 0.2121 1.3347 9.4669 33 1 -1.9734 1.4207 10.9196 34 1 -3.9188 0.2148 9.5514 35 1 -1.6467 -0.9717 5.7869 36 1 0.1637 -4.0544 -0.8457 37 1 1.4785 -3.1974 -1.8144 38 1 3.1567 -3.6954 0.0219 39 1 1.8427 -4.5522 0.9915 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744277963.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:49:48 Heat of formation + Delta-G solvation = 58.932342 kcal Electronic energy + Delta-G solvation = -24927.083398 eV Core-core repulsion = 21223.801790 eV Total energy + Delta-G solvation = -3703.281608 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.66563 -41.69551 -40.65229 -38.61334 -36.97430 -34.91936 -34.19847 -33.92620 -31.47978 -30.51022 -28.79025 -27.49931 -26.08590 -25.15177 -23.27508 -22.96546 -21.92057 -21.47473 -21.14427 -19.68752 -18.76640 -18.40840 -17.54428 -17.39180 -16.93401 -16.77209 -16.69727 -16.48823 -15.90727 -15.52488 -15.20576 -14.99367 -14.71795 -14.49294 -13.98301 -13.94491 -13.71436 -13.61543 -13.24116 -12.85207 -12.79428 -12.33588 -12.14487 -12.03182 -11.87295 -11.66110 -11.54080 -11.38833 -11.25670 -11.12569 -11.03954 -10.66803 -10.28945 -10.07242 -9.41847 -8.10391 -6.18250 -0.79771 -0.45682 0.89085 0.96208 1.39316 1.41236 1.45440 1.54891 1.63541 1.81437 2.41736 2.54932 2.97979 3.13428 3.29541 3.36512 3.61777 3.66791 3.79730 4.01940 4.06622 4.16493 4.31124 4.36622 4.46680 4.54850 4.60437 4.70419 4.71159 4.86981 4.92088 4.95104 5.02135 5.16578 5.19403 5.35912 5.50395 5.55381 5.56542 5.80343 5.94959 6.23535 6.32261 6.63230 6.68078 6.80772 7.43577 8.90537 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.017979 B = 0.003535 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.965116 B = 7918.096134 C = 8534.207730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.033 3.967 3 Si 0.946 3.054 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.254 1.254 7 C -0.498 4.498 8 H 0.062 0.938 9 C 0.011 3.989 10 C 0.123 3.877 11 O -0.321 6.321 12 C 0.497 3.503 13 O -0.538 6.538 14 C -0.058 4.058 15 C -0.126 4.126 16 C 0.147 3.853 17 N -0.485 5.485 18 C 0.358 3.642 19 N -0.344 5.344 20 C 0.066 3.934 21 C -0.255 4.255 22 C 0.067 3.933 23 N -0.334 5.334 24 C -0.124 4.124 25 C -0.188 4.188 26 C -0.183 4.183 27 H 0.259 0.741 28 H 0.038 0.962 29 H 0.081 0.919 30 H 0.172 0.828 31 H 0.227 0.773 32 H 0.203 0.797 33 H 0.193 0.807 34 H 0.227 0.773 35 H 0.140 0.860 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.241 2.479 18.692 18.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.167 4.167 3 Si 0.771 3.229 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.178 1.178 7 C -0.535 4.535 8 H 0.080 0.920 9 C 0.010 3.990 10 C 0.049 3.951 11 O -0.235 6.235 12 C 0.342 3.658 13 O -0.430 6.430 14 C -0.068 4.068 15 C -0.146 4.146 16 C -0.011 4.011 17 N -0.200 5.200 18 C 0.131 3.869 19 N -0.123 5.123 20 C -0.074 4.074 21 C -0.283 4.283 22 C -0.121 4.121 23 N -0.153 5.153 24 C -0.147 4.147 25 C -0.226 4.226 26 C -0.220 4.220 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.099 0.901 30 H 0.189 0.811 31 H 0.243 0.757 32 H 0.220 0.780 33 H 0.210 0.790 34 H 0.244 0.756 35 H 0.158 0.842 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.108 0.892 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.852 2.271 18.287 18.520 hybrid contribution -0.438 0.521 -0.666 0.952 sum 1.414 2.792 17.621 17.897 Atomic orbital electron populations 1.69958 1.07457 1.27322 1.50055 1.25589 0.95253 1.02036 0.93813 0.85730 0.79462 0.79363 0.78329 1.20392 1.21622 1.17816 1.20655 0.95017 0.90187 1.47600 0.91974 1.18981 0.95705 0.90315 0.93973 1.22652 0.98141 0.94444 0.79816 1.86501 1.40725 1.73183 1.23078 1.21421 0.83229 0.76837 0.84325 1.90755 1.21586 1.48401 1.82287 1.19418 0.96014 0.99760 0.91561 1.22862 0.94851 0.96138 1.00754 1.23345 0.99786 0.92117 0.85855 1.66889 1.00195 1.20356 1.32529 1.17481 0.87705 0.95575 0.86149 1.45862 1.07558 1.45388 1.13492 1.23492 1.02721 0.96082 0.85110 1.22128 0.91186 1.10466 1.04473 1.24923 1.02326 0.94566 0.90260 1.77570 0.88311 1.25326 1.24082 1.21483 1.01610 0.99625 0.91992 1.22984 0.99927 1.04981 0.94684 1.22996 0.96966 1.00187 1.01846 0.93138 0.94373 0.90078 0.81088 0.75666 0.77996 0.79013 0.75648 0.84201 0.90306 0.89877 0.89245 0.89443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.76 10.90 21.45 0.23 -50.53 16 2 C 0.03 1.75 5.16 84.65 0.44 2.18 16 3 Si 0.95 41.32 29.56 68.60 2.03 43.35 16 4 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 6 H -0.25 -10.39 7.11 99.48 0.71 -9.68 16 7 C -0.50 -25.85 8.76 25.60 0.22 -25.63 16 8 H 0.06 3.16 7.85 -2.91 -0.02 3.14 16 9 C 0.01 0.51 2.10 -52.93 -0.11 0.40 16 10 C 0.12 6.02 4.60 71.98 0.33 6.35 16 11 O -0.32 -14.91 9.26 -55.76 -0.52 -15.43 16 12 C 0.50 21.84 7.91 70.43 0.56 22.39 16 13 O -0.54 -26.31 16.23 20.04 0.33 -25.98 16 14 C -0.06 -2.07 5.91 -19.91 -0.12 -2.19 16 15 C -0.13 -3.47 9.70 22.65 0.22 -3.25 16 16 C 0.15 3.12 11.17 84.65 0.95 4.06 16 17 N -0.49 -12.20 9.83 -192.95 -1.90 -14.10 16 18 C 0.36 10.75 7.55 132.77 1.00 11.75 16 19 N -0.34 -9.60 3.81 -192.27 -0.73 -10.33 16 20 C 0.07 1.32 11.10 83.39 0.93 2.25 16 21 C -0.25 -4.00 10.80 22.00 0.24 -3.77 16 22 C 0.07 1.28 12.02 85.26 1.02 2.30 16 23 N -0.33 -9.50 11.83 -56.98 -0.67 -10.17 16 24 C -0.12 -4.30 9.27 22.77 0.21 -4.09 16 25 C -0.19 -8.03 9.96 30.62 0.30 -7.73 16 26 C -0.18 -7.33 9.92 30.62 0.30 -7.02 16 27 H 0.26 14.08 8.32 -92.71 -0.77 13.31 16 28 H 0.04 1.77 8.05 -2.39 -0.02 1.75 16 29 H 0.08 4.52 6.07 -2.39 -0.01 4.51 16 30 H 0.17 4.51 7.71 -2.91 -0.02 4.49 16 31 H 0.23 2.49 8.06 -2.91 -0.02 2.46 16 32 H 0.20 2.99 8.05 -2.91 -0.02 2.97 16 33 H 0.19 1.50 8.06 -2.91 -0.02 1.48 16 34 H 0.23 2.34 8.06 -2.91 -0.02 2.32 16 35 H 0.14 5.32 7.37 -2.91 -0.02 5.30 16 36 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 37 H 0.08 3.54 8.14 -2.39 -0.02 3.52 16 38 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 39 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 Total: -1.00 -69.69 348.83 6.34 -63.35 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: 1.08 Total: 21.83 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: 6.50 Total: -1.98 kcal Atomic # 7 Polarization: -82.06 SS G_CDS: -3.07 Total: -85.13 kcal Atomic # 8 Polarization: -41.22 SS G_CDS: -0.19 Total: -41.41 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Total: -69.69 6.34 -63.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744277963.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.280 kcal (2) G-P(sol) polarization free energy of solvation -69.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds