Wall clock time and date at job start Fri Apr 10 2020 22:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99948 * 2 1 4 4 H 1.48498 * 109.47395 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47370 * 300.00112 * 3 2 1 6 6 H 1.48499 * 109.46997 * 60.00032 * 3 2 1 7 7 C 1.37881 * 120.00199 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00293 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99981 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.47172 * 180.02562 * 9 7 2 11 11 C 1.46498 * 119.99810 * 97.27437 * 10 9 7 12 12 C 1.50696 * 109.47291 * 269.99892 * 11 10 9 13 13 C 1.38679 * 120.41825 * 90.00230 * 12 11 10 14 14 C 1.38630 * 118.41927 * 179.97438 * 13 12 11 15 15 C 1.38224 * 119.16185 * 0.25431 * 14 13 12 16 16 N 1.31856 * 120.76232 * 359.49289 * 15 14 13 17 17 C 1.31884 * 121.72917 * 0.50097 * 16 15 14 18 18 C 1.34766 * 119.99890 * 277.27449 * 10 9 7 19 19 O 1.21602 * 119.99994 * 179.31142 * 18 10 9 20 20 C 1.47421 * 120.00216 * 359.31043 * 18 10 9 21 21 C 1.38005 * 125.85250 * 189.54812 * 20 18 10 22 22 C 1.39301 * 107.53335 * 179.83969 * 21 20 18 23 23 C 1.38350 * 107.40819 * 0.41491 * 22 21 20 24 24 C 1.46426 * 125.95666 * 179.71788 * 23 22 21 25 25 O 1.21337 * 119.99471 * 0.02562 * 24 23 22 26 26 N 1.36604 * 125.85116 * 9.85167 * 20 18 10 27 27 H 0.97007 * 125.66184 * 0.02562 * 26 20 18 28 28 H 0.96993 * 120.00167 * 359.97438 * 1 2 3 29 29 H 1.08994 * 109.47038 * 60.00076 * 9 7 2 30 30 H 1.09003 * 109.46843 * 300.00301 * 9 7 2 31 31 H 1.09003 * 109.47289 * 149.99859 * 11 10 9 32 32 H 1.09004 * 109.47397 * 29.99880 * 11 10 9 33 33 H 1.07995 * 120.79100 * 359.95598 * 13 12 11 34 34 H 1.07995 * 120.41719 * 179.97438 * 14 13 12 35 35 H 1.07998 * 119.62031 * 179.74869 * 15 14 13 36 36 H 1.07992 * 119.61714 * 179.75121 * 17 16 15 37 37 H 1.08008 * 126.23106 * 359.96142 * 21 20 18 38 38 H 1.07999 * 126.29955 * 180.12051 * 22 21 20 39 39 H 1.08001 * 120.00095 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2032 -3.6127 -0.0005 11 6 2.5570 -4.2738 1.2580 12 6 3.7496 -3.5847 1.8694 13 6 3.5747 -2.5256 2.7475 14 6 4.7006 -1.9222 3.2861 15 6 5.9513 -2.3894 2.9284 16 7 6.0797 -3.4023 2.0940 17 6 5.0312 -4.0004 1.5627 18 6 2.7534 -4.0288 -1.1583 19 8 3.5531 -4.9448 -1.1567 20 6 2.3857 -3.3735 -2.4266 21 6 2.7243 -3.8117 -3.6907 22 6 2.1799 -2.9137 -4.6060 23 6 1.5236 -1.9332 -3.8836 24 6 0.8115 -0.7833 -4.4447 25 8 0.7614 -0.6287 -5.6471 26 7 1.6565 -2.2252 -2.5519 27 1 1.2933 -1.7031 -1.8193 28 1 -0.4850 0.8400 0.0004 29 1 0.6242 -2.5567 -0.8903 30 1 0.6248 -2.5571 0.8897 31 1 2.8011 -5.3182 1.0637 32 1 1.7137 -4.2198 1.9465 33 1 2.5849 -2.1789 3.0053 34 1 4.6018 -1.0946 3.9728 35 1 6.8336 -1.9222 3.3404 36 1 5.1760 -4.8244 0.8799 37 1 3.3039 -4.6919 -3.9272 38 1 2.2599 -2.9697 -5.6815 39 1 0.3311 -0.0729 -3.7883 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749524304.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:49:58 Heat of formation + Delta-G solvation = 26.437413 kcal Electronic energy + Delta-G solvation = -26118.669565 eV Core-core repulsion = 22413.978871 eV Total energy + Delta-G solvation = -3704.690694 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.07119 -39.89969 -38.73812 -37.94265 -35.72517 -33.50254 -32.26232 -31.44256 -30.52583 -29.39933 -27.95258 -26.30228 -24.22563 -23.43824 -23.06057 -22.11297 -20.65927 -20.03239 -19.00793 -17.36366 -16.99026 -16.75692 -16.39715 -15.73434 -15.72537 -15.23129 -14.96014 -14.55229 -14.54425 -13.97225 -13.89039 -13.48110 -13.15777 -13.10611 -12.73555 -12.67429 -12.53063 -12.34918 -12.27627 -12.05644 -11.59557 -11.31911 -11.29619 -10.99769 -10.62554 -10.17751 -9.76816 -9.55563 -9.39945 -9.17314 -9.08898 -8.69979 -8.56303 -8.19923 -7.79700 -6.69466 -4.82964 1.29210 1.40095 1.65110 2.44270 2.92793 3.05325 3.10810 3.45654 3.51619 3.77404 3.86754 3.97691 4.24000 4.60582 4.71068 4.74788 4.99792 5.17755 5.21196 5.33099 5.39023 5.59550 5.63754 5.69482 5.84357 5.89976 5.98576 6.09769 6.16907 6.35233 6.44963 6.45486 6.58638 6.64480 6.93703 7.03018 7.09019 7.28529 7.32168 7.44718 7.71890 7.86831 8.05125 8.27835 8.33885 8.64074 8.89237 10.32851 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.011861 B = 0.006138 C = 0.004653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.098559 B = 4560.560606 C = 6015.828233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.068 3.932 3 Si 0.892 3.108 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.557 4.557 8 H 0.071 0.929 9 C 0.216 3.784 10 N -0.592 5.592 11 C 0.165 3.835 12 C -0.146 4.146 13 C -0.038 4.038 14 C -0.181 4.181 15 C 0.090 3.910 16 N -0.494 5.494 17 C 0.116 3.884 18 C 0.587 3.413 19 O -0.549 6.549 20 C 0.011 3.989 21 C -0.154 4.154 22 C -0.133 4.133 23 C -0.093 4.093 24 C 0.412 3.588 25 O -0.469 6.469 26 N -0.480 5.480 27 H 0.453 0.547 28 H 0.275 0.725 29 H 0.038 0.962 30 H 0.052 0.948 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.136 0.864 34 H 0.129 0.871 35 H 0.148 0.852 36 H 0.157 0.843 37 H 0.146 0.854 38 H 0.144 0.856 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.461 -3.086 3.620 4.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.138 4.138 3 Si 0.718 3.282 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.595 4.595 8 H 0.089 0.911 9 C 0.095 3.905 10 N -0.322 5.322 11 C 0.042 3.958 12 C -0.149 4.149 13 C -0.065 4.065 14 C -0.201 4.201 15 C -0.067 4.067 16 N -0.203 5.203 17 C -0.041 4.041 18 C 0.376 3.624 19 O -0.428 6.428 20 C -0.112 4.112 21 C -0.179 4.179 22 C -0.159 4.159 23 C -0.211 4.211 24 C 0.272 3.728 25 O -0.342 6.342 26 N -0.091 5.091 27 H 0.313 0.687 28 H 0.085 0.915 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.107 0.893 32 H 0.104 0.896 33 H 0.154 0.846 34 H 0.147 0.853 35 H 0.165 0.835 36 H 0.174 0.826 37 H 0.164 0.836 38 H 0.162 0.838 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.367 -3.483 2.979 5.158 hybrid contribution -0.617 1.799 0.787 2.058 sum 1.750 -1.684 3.766 4.481 Atomic orbital electron populations 1.69920 1.05838 1.28512 1.47270 1.25056 0.95026 0.99754 0.93969 0.86474 0.80662 0.82530 0.78577 1.19159 1.20115 1.20109 1.21658 0.94557 0.89869 1.53444 0.91055 1.19868 0.87974 0.83382 0.99277 1.48125 1.44273 1.34782 1.05036 1.20178 0.94327 0.96148 0.85178 1.21205 0.96804 0.98471 0.98405 1.21509 0.99501 0.92446 0.93014 1.22065 0.93781 1.01664 1.02558 1.22663 0.96800 0.93043 0.94174 1.67688 1.34482 1.08889 1.09225 1.22784 0.87505 0.98052 0.95743 1.17274 0.80503 0.82265 0.82336 1.90711 1.34877 1.30468 1.86700 1.20585 1.03630 0.91788 0.95177 1.21114 1.04943 1.01999 0.89886 1.21319 1.00683 0.94731 0.99147 1.21681 1.11445 1.02932 0.85003 1.23001 0.75890 0.83919 0.89991 1.90509 1.52138 1.73154 1.18380 1.44347 1.36821 1.19448 1.08483 0.68704 0.91532 0.94518 0.93027 0.89301 0.89580 0.84618 0.85307 0.83494 0.82620 0.83625 0.83847 0.87982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -19.82 13.29 55.43 0.74 -19.08 16 2 C 0.07 1.50 5.06 -17.82 -0.09 1.41 16 3 Si 0.89 18.15 29.54 -169.99 -5.02 13.13 16 4 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 5 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 6 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.56 -12.06 7.26 -34.44 -0.25 -12.31 16 8 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 9 C 0.22 4.30 4.76 -5.19 -0.02 4.27 16 10 N -0.59 -10.98 2.46 -177.71 -0.44 -11.42 16 11 C 0.17 2.60 5.59 -5.20 -0.03 2.57 16 12 C -0.15 -2.38 5.48 -104.48 -0.57 -2.96 16 13 C -0.04 -0.59 9.86 -39.27 -0.39 -0.98 16 14 C -0.18 -2.60 10.11 -39.44 -0.40 -3.00 16 15 C 0.09 1.35 11.18 -17.55 -0.20 1.15 16 16 N -0.49 -8.52 10.36 -13.26 -0.14 -8.66 16 17 C 0.12 2.00 10.86 -17.55 -0.19 1.81 16 18 C 0.59 11.72 7.60 -12.53 -0.10 11.62 16 19 O -0.55 -11.44 16.00 5.28 0.08 -11.35 16 20 C 0.01 0.22 6.62 -82.09 -0.54 -0.33 16 21 C -0.15 -2.76 10.61 -39.27 -0.42 -3.18 16 22 C -0.13 -2.30 10.61 -39.15 -0.42 -2.72 16 23 C -0.09 -1.69 7.10 -82.23 -0.58 -2.28 16 24 C 0.41 6.96 11.75 34.03 0.40 7.36 16 25 O -0.47 -8.72 17.69 5.51 0.10 -8.62 16 26 N -0.48 -9.34 4.81 -5.97 -0.03 -9.37 16 27 H 0.45 9.20 3.22 -40.82 -0.13 9.07 16 28 H 0.27 5.95 8.31 -40.82 -0.34 5.61 16 29 H 0.04 0.77 5.21 -51.93 -0.27 0.50 16 30 H 0.05 1.05 7.81 -51.93 -0.41 0.64 16 31 H 0.09 1.33 7.38 -51.93 -0.38 0.95 16 32 H 0.09 1.18 7.80 -51.93 -0.41 0.77 16 33 H 0.14 2.02 8.06 -52.49 -0.42 1.60 16 34 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 35 H 0.15 1.73 8.06 -52.49 -0.42 1.31 16 36 H 0.16 2.69 7.58 -52.49 -0.40 2.29 16 37 H 0.15 2.37 8.06 -52.48 -0.42 1.95 16 38 H 0.14 2.20 8.06 -52.49 -0.42 1.77 16 39 H 0.10 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 343.41 15.07 5.18 5.18 Total: -1.00 -26.07 343.41 -7.40 -33.48 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: -4.08 Total: 14.27 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: -3.79 Total: 2.46 kcal Atomic # 7 Polarization: -48.66 SS G_CDS: 0.13 Total: -48.53 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: 0.18 Total: -19.98 kcal Atomic # 14 Polarization: 18.15 SS G_CDS: -5.02 Total: 13.13 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -26.07 -7.40 -33.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749524304.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.913 kcal (2) G-P(sol) polarization free energy of solvation -26.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds