Wall clock time and date at job start Fri Apr 10 2020 22:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31788 * 119.08168 * 2 1 4 4 C 1.32543 * 121.00948 * 179.97438 * 3 2 1 5 5 C 1.38112 * 119.20193 * 0.02562 * 4 3 2 6 6 C 1.39626 * 118.33455 * 359.97438 * 5 4 3 7 7 N 1.38542 * 120.53441 * 179.97438 * 6 5 4 8 8 C 1.46499 * 119.99875 * 0.02562 * 7 6 5 9 9 C 1.50701 * 109.46992 * 179.97438 * 8 7 6 10 10 C 1.38395 * 119.92494 * 269.72428 * 9 8 7 11 11 C 1.38356 * 120.31139 * 179.76551 * 10 9 8 12 12 C 1.37957 * 120.15135 * 0.50983 * 11 10 9 13 13 C 1.39652 * 119.84299 * 359.74596 * 12 11 10 14 14 C 1.47661 * 120.15021 * 180.02562 * 13 12 11 15 15 O 1.21513 * 119.99723 * 179.97438 * 14 13 12 16 16 O 1.34732 * 120.00122 * 359.97438 * 14 13 12 17 17 C 1.34853 * 117.00032 * 179.97438 * 16 14 13 18 18 H 1.08004 * 119.99746 * 0.02562 * 17 16 14 19 19 C 1.38812 * 120.00281 * 180.02562 * 17 16 14 20 20 N 1.31416 * 119.99929 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00305 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47313 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47190 * 120.00003 * 21 19 17 24 24 H 1.48500 * 109.47368 * 240.00024 * 21 19 17 25 25 C 1.37920 * 119.91898 * 89.99890 * 9 8 7 26 26 N 1.31744 * 119.08547 * 180.24733 * 2 1 3 27 27 H 1.09002 * 109.46949 * 90.00563 * 1 2 3 28 28 H 1.09005 * 109.46917 * 210.00117 * 1 2 3 29 29 H 1.09000 * 109.47439 * 330.00269 * 1 2 3 30 30 H 1.08001 * 120.39739 * 180.02562 * 4 3 2 31 31 H 1.08001 * 120.83487 * 179.97438 * 5 4 3 32 32 H 0.97000 * 119.99704 * 179.97438 * 7 6 5 33 33 H 1.09002 * 109.47391 * 59.99672 * 8 7 6 34 34 H 1.09001 * 109.46813 * 299.99728 * 8 7 6 35 35 H 1.08000 * 119.84362 * 0.02562 * 10 9 8 36 36 H 1.07991 * 119.92386 * 180.25260 * 11 10 9 37 37 H 1.07996 * 120.08123 * 179.76659 * 12 11 10 38 38 H 0.96996 * 120.00381 * 179.97438 * 20 19 17 39 39 H 1.07996 * 120.08007 * 359.95204 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1476 1.1517 0.0000 4 6 3.4723 1.1963 0.0005 5 6 4.1863 0.0141 0.0005 6 6 3.4769 -1.1885 0.0005 7 7 4.1471 -2.4011 0.0000 8 6 5.6118 -2.4284 0.0000 9 6 6.0875 -3.8583 0.0000 10 6 6.3109 -4.5116 1.1994 11 6 6.7431 -5.8259 1.2088 12 6 6.9643 -6.4911 0.0206 13 6 6.7460 -5.8364 -1.1935 14 6 6.9801 -6.5420 -2.4693 15 8 6.7888 -5.9698 -3.5240 16 8 7.4058 -7.8203 -2.4638 17 6 7.5995 -8.4062 -3.6629 18 1 7.4143 -7.8517 -4.5710 19 6 8.0371 -9.7218 -3.7300 20 7 8.2620 -10.3967 -2.6250 21 14 8.3061 -10.5331 -5.3909 22 1 7.9848 -9.5668 -6.4718 23 1 9.7245 -10.9561 -5.5113 24 1 7.4234 -11.7214 -5.5102 25 6 6.3046 -4.5111 -1.1954 26 7 2.1475 -1.1513 -0.0050 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 3.9871 2.1457 0.0009 31 1 5.2663 0.0196 0.0005 32 1 3.6464 -3.2319 0.0004 33 1 5.9847 -1.9218 0.8901 34 1 5.9846 -1.9211 -0.8898 35 1 6.1432 -3.9944 2.1325 36 1 6.9115 -6.3309 2.1483 37 1 7.3052 -7.5158 0.0292 38 1 8.5674 -11.3161 -2.6719 39 1 6.1334 -3.9990 -2.1307 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000754952801.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:50:06 Heat of formation + Delta-G solvation = -25.443717 kcal Electronic energy + Delta-G solvation = -23756.801256 eV Core-core repulsion = 20049.860827 eV Total energy + Delta-G solvation = -3706.940429 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.86668 -41.35088 -40.04479 -37.59131 -37.23862 -34.47175 -34.34683 -33.74167 -32.23567 -31.58802 -29.21472 -27.88529 -27.05057 -25.14042 -24.66276 -23.28025 -22.50036 -21.67254 -19.95523 -19.39879 -18.47471 -18.17294 -17.57990 -16.73469 -16.65288 -16.56770 -16.26482 -16.20073 -15.93174 -15.91077 -15.41132 -14.98981 -14.51062 -14.45443 -14.07164 -13.96357 -13.71368 -13.65085 -13.36866 -13.17593 -13.12471 -12.63730 -12.46294 -12.31266 -12.17940 -12.09724 -11.96693 -11.62136 -11.20352 -10.76878 -10.68253 -10.18532 -10.04402 -9.98504 -9.13174 -8.62693 -6.39850 -0.26259 0.13400 0.18311 0.44905 1.31051 1.32111 1.49588 1.67883 2.04722 2.09112 2.64101 2.75830 2.93795 2.99101 3.25783 3.44801 3.56992 3.85117 3.86781 4.02505 4.20447 4.24597 4.29131 4.37945 4.49821 4.55319 4.62485 4.70292 4.75794 4.85619 4.90927 4.94151 5.07936 5.08628 5.37404 5.38010 5.38445 5.42691 5.74614 5.79932 5.84533 6.25643 6.53576 6.54248 6.82015 7.35833 7.64979 8.57985 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.022794 B = 0.002345 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.105043 B =11935.726188 C =12520.164731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.340 3.660 3 N -0.585 5.585 4 C 0.171 3.829 5 C -0.300 4.300 6 C 0.424 3.576 7 N -0.706 5.706 8 C 0.176 3.824 9 C -0.115 4.115 10 C -0.057 4.057 11 C -0.121 4.121 12 C -0.071 4.071 13 C -0.127 4.127 14 C 0.428 3.572 15 O -0.585 6.585 16 O -0.231 6.231 17 C -0.421 4.421 18 H 0.081 0.919 19 C -0.002 4.002 20 N -0.895 5.895 21 Si 1.019 2.981 22 H -0.266 1.266 23 H -0.257 1.257 24 H -0.257 1.257 25 C -0.051 4.051 26 N -0.606 5.606 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.197 0.803 31 H 0.168 0.832 32 H 0.406 0.594 33 H 0.111 0.889 34 H 0.082 0.918 35 H 0.172 0.828 36 H 0.164 0.836 37 H 0.119 0.881 38 H 0.282 0.718 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.161 18.975 12.223 23.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.071 3.929 3 N -0.305 5.305 4 C 0.010 3.990 5 C -0.328 4.328 6 C 0.180 3.820 7 N -0.337 5.337 8 C 0.054 3.946 9 C -0.116 4.116 10 C -0.075 4.075 11 C -0.139 4.139 12 C -0.090 4.090 13 C -0.128 4.128 14 C 0.278 3.722 15 O -0.485 6.485 16 O -0.138 6.138 17 C -0.497 4.497 18 H 0.098 0.902 19 C -0.203 4.203 20 N -0.531 5.531 21 Si 0.838 3.162 22 H -0.190 1.190 23 H -0.181 1.181 24 H -0.182 1.182 25 C -0.070 4.070 26 N -0.332 5.332 27 H 0.110 0.890 28 H 0.105 0.895 29 H 0.115 0.885 30 H 0.213 0.787 31 H 0.185 0.815 32 H 0.242 0.758 33 H 0.129 0.871 34 H 0.100 0.900 35 H 0.189 0.811 36 H 0.182 0.818 37 H 0.137 0.863 38 H 0.091 0.909 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -7.847 18.902 12.034 23.742 hybrid contribution 1.021 -1.251 -1.241 2.036 sum -6.827 17.651 10.792 21.786 Atomic orbital electron populations 1.20630 0.84347 1.04646 1.04425 1.23473 0.98933 0.82571 0.87883 1.68327 1.11170 1.29726 1.21305 1.23470 0.89073 0.99383 0.87080 1.22425 1.03559 0.92159 1.14630 1.18840 0.88386 0.87606 0.87148 1.44706 1.06113 1.04866 1.78031 1.20390 0.77821 0.91878 1.04528 1.19705 1.03201 0.96508 0.92146 1.21685 0.93670 0.93767 0.98375 1.21470 0.99408 0.95291 0.97689 1.21654 0.95206 1.00130 0.92006 1.19265 1.07553 0.95575 0.90389 1.21918 0.78071 0.81955 0.90280 1.90575 1.54443 1.68394 1.35085 1.83907 1.70371 1.24435 1.35129 1.21520 1.48394 0.96786 0.82957 0.90155 1.26582 0.94507 0.94975 1.04202 1.70045 1.42064 1.11444 1.29592 0.84551 0.79331 0.77963 0.74386 1.19026 1.18082 1.18178 1.21118 0.94841 0.91657 0.99374 1.67779 1.08603 1.32166 1.24662 0.89031 0.89472 0.88515 0.78654 0.81476 0.75837 0.87079 0.90014 0.81097 0.81841 0.86317 0.90880 0.86064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.28 10.32 71.24 0.73 -0.54 16 2 C 0.34 7.62 7.64 138.77 1.06 8.69 16 3 N -0.58 -12.61 10.33 -188.12 -1.94 -14.56 16 4 C 0.17 2.84 11.29 84.56 0.95 3.80 16 5 C -0.30 -4.96 9.40 22.58 0.21 -4.75 16 6 C 0.42 9.09 7.71 133.16 1.03 10.11 16 7 N -0.71 -13.41 5.70 -348.31 -1.99 -15.39 16 8 C 0.18 2.68 5.05 85.63 0.43 3.11 16 9 C -0.12 -2.44 5.24 -19.90 -0.10 -2.54 16 10 C -0.06 -1.01 9.69 22.34 0.22 -0.79 16 11 C -0.12 -2.74 10.03 22.23 0.22 -2.51 16 12 C -0.07 -2.44 9.62 22.54 0.22 -2.22 16 13 C -0.13 -5.10 5.87 -20.10 -0.12 -5.22 16 14 C 0.43 22.99 7.84 70.31 0.55 23.54 16 15 O -0.58 -34.02 15.59 19.80 0.31 -33.71 16 16 O -0.23 -13.96 8.99 11.36 0.10 -13.86 16 17 C -0.42 -26.07 9.65 67.96 0.66 -25.41 16 18 H 0.08 5.09 6.86 -2.91 -0.02 5.07 16 19 C 0.00 -0.09 5.49 84.89 0.47 0.38 16 20 N -0.89 -52.40 13.67 21.63 0.30 -52.11 16 21 Si 1.02 43.48 29.55 68.60 2.03 45.51 16 22 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 23 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 24 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 25 C -0.05 -1.62 9.25 22.54 0.21 -1.41 16 26 N -0.61 -14.94 10.37 -185.44 -1.92 -16.86 16 27 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 29 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.20 1.73 8.06 -2.91 -0.02 1.70 16 31 H 0.17 1.75 6.87 -2.91 -0.02 1.73 16 32 H 0.41 8.47 8.59 -92.71 -0.80 7.68 16 33 H 0.11 1.01 7.91 -2.39 -0.02 0.99 16 34 H 0.08 1.22 7.91 -2.39 -0.02 1.20 16 35 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16 36 H 0.16 2.61 8.06 -2.91 -0.02 2.58 16 37 H 0.12 4.62 7.61 -2.91 -0.02 4.59 16 38 H 0.28 14.81 8.31 -92.71 -0.77 14.04 16 39 H 0.12 4.12 7.65 -2.91 -0.02 4.09 16 Total: -1.00 -81.24 349.92 3.92 -77.32 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: 0.30 Total: 19.45 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: 6.74 Total: 4.21 kcal Atomic # 7 Polarization: -93.36 SS G_CDS: -5.56 Total: -98.92 kcal Atomic # 8 Polarization: -47.98 SS G_CDS: 0.41 Total: -47.57 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -81.24 3.92 -77.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754952801.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.872 kcal (2) G-P(sol) polarization free energy of solvation -81.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds