Wall clock time and date at job start Fri Apr 10 2020 22:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31794 * 119.08693 * 2 1 4 4 C 1.32496 * 120.99115 * 180.02562 * 3 2 1 5 5 C 1.38222 * 119.18621 * 359.97438 * 4 3 2 6 6 C 1.39495 * 118.33451 * 0.02562 * 5 4 3 7 7 N 1.39044 * 120.52258 * 179.97438 * 6 5 4 8 8 C 1.34778 * 120.00163 * 174.84246 * 7 6 5 9 9 O 1.21266 * 119.99736 * 355.11011 * 8 7 6 10 10 C 1.50696 * 119.99852 * 174.84383 * 8 7 6 11 11 C 1.50710 * 109.46850 * 179.97438 * 10 8 7 12 12 C 1.38327 * 119.96008 * 269.72226 * 11 10 8 13 13 C 1.38282 * 120.13468 * 179.76621 * 12 11 10 14 14 C 1.38125 * 120.06598 * 0.50862 * 13 12 11 15 15 C 1.38854 * 119.93242 * 359.74801 * 14 13 12 16 16 O 1.35746 * 120.06690 * 179.97438 * 15 14 13 17 17 C 1.34832 * 117.00159 * 5.73139 * 16 15 14 18 18 H 1.07994 * 119.99820 * 5.42062 * 17 16 15 19 19 C 1.38653 * 120.00010 * 185.42344 * 17 16 15 20 20 N 1.31558 * 120.00055 * 179.97438 * 19 17 16 21 21 Si 1.86807 * 120.00098 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.46823 * 90.00033 * 21 19 17 23 23 H 1.48499 * 109.47204 * 210.00127 * 21 19 17 24 24 H 1.48500 * 109.47024 * 329.99945 * 21 19 17 25 25 C 1.38071 * 119.96965 * 89.99671 * 11 10 8 26 26 N 1.31746 * 119.08458 * 180.25544 * 2 1 3 27 27 H 1.08991 * 109.47396 * 90.00131 * 1 2 3 28 28 H 1.09006 * 109.46889 * 210.00231 * 1 2 3 29 29 H 1.09000 * 109.46921 * 329.99677 * 1 2 3 30 30 H 1.08000 * 120.40832 * 180.02562 * 4 3 2 31 31 H 1.07997 * 120.82951 * 179.97438 * 5 4 3 32 32 H 0.97002 * 119.99478 * 354.83263 * 7 6 5 33 33 H 1.08997 * 109.47000 * 299.99252 * 10 8 7 34 34 H 1.08995 * 109.47680 * 59.99589 * 10 8 7 35 35 H 1.07993 * 119.93234 * 359.97438 * 12 11 10 36 36 H 1.07996 * 119.96279 * 180.25438 * 13 12 11 37 37 H 1.07996 * 120.02697 * 179.72284 * 14 13 12 38 38 H 0.96998 * 120.00125 * 179.97438 * 20 19 17 39 39 H 1.08008 * 120.03112 * 359.95586 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1477 1.1517 0.0000 4 6 3.4719 1.1958 -0.0005 5 6 4.1857 0.0121 -0.0005 6 6 3.4761 -1.1889 -0.0005 7 7 4.1481 -2.4062 -0.0010 8 6 3.4562 -3.5580 0.1039 9 8 2.2579 -3.5308 0.2877 10 6 4.1708 -4.8796 -0.0133 11 6 3.1778 -6.0029 0.1398 12 6 2.9138 -6.5255 1.3930 13 6 1.9998 -7.5530 1.5382 14 6 1.3553 -8.0676 0.4302 15 6 1.6221 -7.5486 -0.8297 16 8 0.9907 -8.0526 -1.9206 17 6 0.0303 -8.9732 -1.7011 18 1 -0.2666 -9.2134 -0.6909 19 6 -0.5762 -9.6113 -2.7722 20 7 -1.5129 -10.5099 -2.5581 21 14 -0.0631 -9.1952 -4.5196 22 1 1.0470 -10.0895 -4.9357 23 1 -1.2189 -9.3831 -5.4329 24 1 0.3903 -7.7824 -4.5792 25 6 2.5368 -6.5130 -0.9716 26 7 2.1474 -1.1513 -0.0051 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 3.9873 2.1448 -0.0001 31 1 5.2656 0.0170 -0.0013 32 1 5.1150 -2.4263 -0.0771 33 1 4.6498 -4.9482 -0.9899 34 1 4.9269 -4.9544 0.7683 35 1 3.4201 -6.1281 2.2602 36 1 1.7927 -7.9562 2.5185 37 1 0.6449 -8.8730 0.5439 38 1 -1.9375 -10.9561 -3.3074 39 1 2.7462 -6.1070 -1.9503 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760471817.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:50:23 Heat of formation + Delta-G solvation = 26.349351 kcal Electronic energy + Delta-G solvation = -24375.170833 eV Core-core repulsion = 20670.476320 eV Total energy + Delta-G solvation = -3704.694513 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.46827 -39.86281 -38.94669 -36.75347 -35.56341 -33.61163 -32.65917 -32.34224 -31.68508 -29.45736 -28.67375 -27.40391 -25.21464 -24.48771 -22.99308 -21.86780 -21.35709 -20.33837 -18.31092 -17.77180 -17.67246 -16.99551 -16.55432 -15.94405 -15.75484 -15.26877 -15.09250 -14.77912 -14.55548 -14.08142 -13.93444 -13.64956 -13.50099 -13.38238 -12.94517 -12.61254 -12.48526 -12.43872 -12.18131 -11.90505 -11.48284 -11.31786 -11.01080 -10.85850 -10.76846 -10.75696 -10.24051 -10.15377 -10.13637 -9.40022 -9.12215 -8.98789 -8.85080 -8.16182 -7.35568 -6.38923 -4.05458 0.68679 0.94574 1.94259 2.27973 2.56596 2.63007 3.23708 3.26643 3.42517 3.65121 3.80862 3.96184 4.26042 4.36917 4.47839 4.65619 4.77060 4.85149 5.00436 5.07643 5.12377 5.19870 5.26969 5.47378 5.48267 5.57013 5.67094 5.69900 5.82860 5.97356 6.12455 6.25309 6.36995 6.50281 6.59443 6.78841 7.08953 7.15926 7.20602 7.32467 7.60950 7.82436 7.93929 8.06324 8.13285 8.96553 9.59240 10.68971 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.016087 B = 0.003046 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.168370 B = 9189.487124 C = 9950.335318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.350 3.650 3 N -0.548 5.548 4 C 0.171 3.829 5 C -0.278 4.278 6 C 0.412 3.588 7 N -0.663 5.663 8 C 0.499 3.501 9 O -0.441 6.441 10 C -0.089 4.089 11 C -0.040 4.040 12 C -0.187 4.187 13 C -0.076 4.076 14 C -0.215 4.215 15 C 0.160 3.840 16 O -0.218 6.218 17 C -0.388 4.388 18 H 0.106 0.894 19 C 0.063 3.937 20 N -0.881 5.881 21 Si 0.905 3.095 22 H -0.274 1.274 23 H -0.282 1.282 24 H -0.260 1.260 25 C -0.172 4.172 26 N -0.512 5.512 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.169 0.831 31 H 0.146 0.854 32 H 0.419 0.581 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.111 0.889 37 H 0.133 0.867 38 H 0.279 0.721 39 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.905 19.828 5.701 25.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.082 3.918 3 N -0.266 5.266 4 C 0.007 3.993 5 C -0.305 4.305 6 C 0.172 3.828 7 N -0.311 5.311 8 C 0.285 3.715 9 O -0.305 6.305 10 C -0.129 4.129 11 C -0.041 4.041 12 C -0.206 4.206 13 C -0.094 4.094 14 C -0.234 4.234 15 C 0.108 3.892 16 O -0.124 6.124 17 C -0.463 4.463 18 H 0.123 0.877 19 C -0.140 4.140 20 N -0.519 5.519 21 Si 0.730 3.270 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.184 1.184 25 C -0.192 4.192 26 N -0.233 5.233 27 H 0.106 0.894 28 H 0.109 0.891 29 H 0.104 0.896 30 H 0.186 0.814 31 H 0.164 0.836 32 H 0.256 0.744 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.129 0.871 37 H 0.151 0.849 38 H 0.089 0.911 39 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 12.880 19.554 5.475 24.046 hybrid contribution 1.670 -0.048 -0.711 1.816 sum 14.550 19.506 4.764 24.797 Atomic orbital electron populations 1.20603 0.85444 1.04332 1.04115 1.23266 0.98246 0.82346 0.87962 1.68289 1.09999 1.30261 1.18031 1.22961 0.89538 0.97914 0.88935 1.22229 1.02384 0.92885 1.12955 1.18748 0.89188 0.85982 0.88921 1.43876 1.11121 1.03708 1.72364 1.21208 0.88559 0.84801 0.76960 1.90882 1.13793 1.86115 1.39760 1.20597 0.98034 0.89419 1.04863 1.18597 0.97014 0.95084 0.93385 1.20412 1.03496 1.01178 0.95547 1.20739 0.95336 0.95720 0.97585 1.21317 1.05317 1.04538 0.92266 1.19007 0.91040 0.92158 0.86964 1.83579 1.46809 1.52726 1.29253 1.20756 1.12170 1.16555 0.96844 0.87677 1.24456 0.95315 0.94640 0.99581 1.69647 1.24552 1.24660 1.33022 0.86191 0.78199 0.80218 0.82364 1.19930 1.20765 1.18368 1.19925 1.01501 0.99518 0.98206 1.68324 1.07072 1.30285 1.17647 0.89437 0.89134 0.89605 0.81374 0.83603 0.74399 0.87811 0.87915 0.87716 0.87121 0.84931 0.91088 0.86815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.94 10.32 36.00 0.37 -0.57 16 2 C 0.35 4.64 7.64 -157.24 -1.20 3.44 16 3 N -0.55 -6.43 10.33 -10.79 -0.11 -6.55 16 4 C 0.17 1.48 11.29 -17.27 -0.20 1.29 16 5 C -0.28 -2.30 10.04 -39.12 -0.39 -2.69 16 6 C 0.41 4.90 7.44 -154.40 -1.15 3.75 16 7 N -0.66 -6.52 5.38 -11.28 -0.06 -6.58 16 8 C 0.50 6.78 7.77 -10.99 -0.09 6.69 16 9 O -0.44 -8.36 14.37 5.57 0.08 -8.28 16 10 C -0.09 -1.02 5.83 -29.03 -0.17 -1.19 16 11 C -0.04 -0.68 4.37 -104.65 -0.46 -1.14 16 12 C -0.19 -3.19 9.70 -39.53 -0.38 -3.57 16 13 C -0.08 -1.41 10.04 -39.61 -0.40 -1.81 16 14 C -0.22 -4.78 9.13 -39.39 -0.36 -5.14 16 15 C 0.16 3.81 6.65 -39.11 -0.26 3.55 16 16 O -0.22 -5.91 8.59 0.06 0.00 -5.91 16 17 C -0.39 -11.15 9.90 30.89 0.31 -10.85 16 18 H 0.11 3.09 5.53 -52.49 -0.29 2.80 16 19 C 0.06 1.80 5.49 -17.52 -0.10 1.70 16 20 N -0.88 -25.83 13.96 55.48 0.77 -25.05 16 21 Si 0.90 22.04 28.62 -169.99 -4.86 17.18 16 22 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 24 H -0.26 -6.39 7.11 56.52 0.40 -5.98 16 25 C -0.17 -3.50 9.65 -39.40 -0.38 -3.88 16 26 N -0.51 -7.73 7.99 -9.89 -0.08 -7.81 16 27 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.17 0.80 8.06 -52.49 -0.42 0.38 16 31 H 0.15 0.63 8.06 -52.49 -0.42 0.20 16 32 H 0.42 2.08 8.72 -40.82 -0.36 1.72 16 33 H 0.10 0.95 8.08 -51.93 -0.42 0.53 16 34 H 0.10 0.83 8.08 -51.93 -0.42 0.41 16 35 H 0.10 1.48 8.06 -52.49 -0.42 1.06 16 36 H 0.11 1.76 8.06 -52.49 -0.42 1.33 16 37 H 0.13 3.08 5.71 -52.49 -0.30 2.78 16 38 H 0.28 7.55 8.31 -40.82 -0.34 7.21 16 39 H 0.11 2.18 8.06 -52.48 -0.42 1.75 16 LS Contribution 344.98 15.07 5.20 5.20 Total: -1.00 -36.71 344.98 -8.21 -44.92 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -4.30 Total: 3.30 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: -4.85 Total: -10.42 kcal Atomic # 7 Polarization: -46.51 SS G_CDS: 0.52 Total: -45.99 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: 0.08 Total: -14.19 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.86 Total: 17.18 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -36.71 -8.21 -44.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760471817.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.269 kcal (2) G-P(sol) polarization free energy of solvation -36.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds