Wall clock time and date at job start Fri Apr 10 2020 22:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31794 * 119.08693 * 2 1 4 4 C 1.32496 * 120.99115 * 180.02562 * 3 2 1 5 5 C 1.38222 * 119.18621 * 359.97438 * 4 3 2 6 6 C 1.39495 * 118.33451 * 0.02562 * 5 4 3 7 7 N 1.39044 * 120.52258 * 179.97438 * 6 5 4 8 8 C 1.34778 * 120.00163 * 174.84246 * 7 6 5 9 9 O 1.21266 * 119.99736 * 355.11011 * 8 7 6 10 10 C 1.50696 * 119.99852 * 174.84383 * 8 7 6 11 11 C 1.50710 * 109.46850 * 179.97438 * 10 8 7 12 12 C 1.38327 * 119.96008 * 269.72226 * 11 10 8 13 13 C 1.38282 * 120.13468 * 179.76621 * 12 11 10 14 14 C 1.38125 * 120.06598 * 0.50862 * 13 12 11 15 15 C 1.38854 * 119.93242 * 359.74801 * 14 13 12 16 16 O 1.35746 * 120.06690 * 179.97438 * 15 14 13 17 17 C 1.34832 * 117.00159 * 5.73139 * 16 15 14 18 18 H 1.07994 * 119.99820 * 5.42062 * 17 16 15 19 19 C 1.38653 * 120.00010 * 185.42344 * 17 16 15 20 20 N 1.31558 * 120.00055 * 179.97438 * 19 17 16 21 21 Si 1.86807 * 120.00098 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.46823 * 90.00033 * 21 19 17 23 23 H 1.48499 * 109.47204 * 210.00127 * 21 19 17 24 24 H 1.48500 * 109.47024 * 329.99945 * 21 19 17 25 25 C 1.38071 * 119.96965 * 89.99671 * 11 10 8 26 26 N 1.31746 * 119.08458 * 180.25544 * 2 1 3 27 27 H 1.08991 * 109.47396 * 90.00131 * 1 2 3 28 28 H 1.09006 * 109.46889 * 210.00231 * 1 2 3 29 29 H 1.09000 * 109.46921 * 329.99677 * 1 2 3 30 30 H 1.08000 * 120.40832 * 180.02562 * 4 3 2 31 31 H 1.07997 * 120.82951 * 179.97438 * 5 4 3 32 32 H 0.97002 * 119.99478 * 354.83263 * 7 6 5 33 33 H 1.08997 * 109.47000 * 299.99252 * 10 8 7 34 34 H 1.08995 * 109.47680 * 59.99589 * 10 8 7 35 35 H 1.07993 * 119.93234 * 359.97438 * 12 11 10 36 36 H 1.07996 * 119.96279 * 180.25438 * 13 12 11 37 37 H 1.07996 * 120.02697 * 179.72284 * 14 13 12 38 38 H 0.96998 * 120.00125 * 179.97438 * 20 19 17 39 39 H 1.08008 * 120.03112 * 359.95586 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1477 1.1517 0.0000 4 6 3.4719 1.1958 -0.0005 5 6 4.1857 0.0121 -0.0005 6 6 3.4761 -1.1889 -0.0005 7 7 4.1481 -2.4062 -0.0010 8 6 3.4562 -3.5580 0.1039 9 8 2.2579 -3.5308 0.2877 10 6 4.1708 -4.8796 -0.0133 11 6 3.1778 -6.0029 0.1398 12 6 2.9138 -6.5255 1.3930 13 6 1.9998 -7.5530 1.5382 14 6 1.3553 -8.0676 0.4302 15 6 1.6221 -7.5486 -0.8297 16 8 0.9907 -8.0526 -1.9206 17 6 0.0303 -8.9732 -1.7011 18 1 -0.2666 -9.2134 -0.6909 19 6 -0.5762 -9.6113 -2.7722 20 7 -1.5129 -10.5099 -2.5581 21 14 -0.0631 -9.1952 -4.5196 22 1 1.0470 -10.0895 -4.9357 23 1 -1.2189 -9.3831 -5.4329 24 1 0.3903 -7.7824 -4.5792 25 6 2.5368 -6.5130 -0.9716 26 7 2.1474 -1.1513 -0.0051 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 3.9873 2.1448 -0.0001 31 1 5.2656 0.0170 -0.0013 32 1 5.1150 -2.4263 -0.0771 33 1 4.6498 -4.9482 -0.9899 34 1 4.9269 -4.9544 0.7683 35 1 3.4201 -6.1281 2.2602 36 1 1.7927 -7.9562 2.5185 37 1 0.6449 -8.8730 0.5439 38 1 -1.9375 -10.9561 -3.3074 39 1 2.7462 -6.1070 -1.9503 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760471817.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:50:22 Heat of formation + Delta-G solvation = 0.998459 kcal Electronic energy + Delta-G solvation = -24376.270130 eV Core-core repulsion = 20670.476320 eV Total energy + Delta-G solvation = -3705.793810 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.29759 -41.11169 -40.42027 -38.37782 -36.54157 -34.50709 -34.40563 -33.74830 -32.74594 -31.09397 -29.51015 -28.65836 -27.21783 -25.39015 -23.85409 -23.36309 -22.69443 -21.61907 -19.71996 -19.24692 -18.69018 -18.57473 -17.42623 -16.97832 -16.86929 -16.49943 -16.40604 -15.95870 -15.75157 -15.59933 -15.53555 -15.00515 -14.90274 -14.41069 -14.18841 -14.14756 -13.94290 -13.72168 -13.27114 -13.06275 -12.93895 -12.52127 -12.51385 -12.45302 -12.34579 -11.94404 -11.77358 -11.35477 -11.27699 -11.01475 -10.92468 -10.02552 -9.77422 -9.67606 -9.08255 -8.51901 -6.24638 -0.10299 0.18305 0.44599 0.68482 1.28187 1.32904 1.49599 1.63550 1.76896 2.26379 2.73456 2.84836 2.98227 3.06576 3.11441 3.27633 3.67849 3.75692 4.03671 4.06557 4.22379 4.28597 4.41052 4.41327 4.48598 4.53998 4.62247 4.64569 4.69124 4.73402 4.95356 4.99350 5.16510 5.22827 5.38220 5.58462 5.62486 5.70419 5.74574 5.84343 5.90594 6.23565 6.43206 6.82390 7.06042 7.32776 7.57283 8.60196 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.016087 B = 0.003046 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.168370 B = 9189.487124 C = 9950.335318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.324 3.676 3 N -0.560 5.560 4 C 0.162 3.838 5 C -0.252 4.252 6 C 0.382 3.618 7 N -0.642 5.642 8 C 0.502 3.498 9 O -0.508 6.508 10 C -0.083 4.083 11 C -0.032 4.032 12 C -0.169 4.169 13 C -0.079 4.079 14 C -0.239 4.239 15 C 0.118 3.882 16 O -0.247 6.247 17 C -0.399 4.399 18 H 0.078 0.922 19 C 0.009 3.991 20 N -0.924 5.924 21 Si 0.972 3.028 22 H -0.261 1.261 23 H -0.266 1.266 24 H -0.267 1.267 25 C -0.179 4.179 26 N -0.559 5.559 27 H 0.090 0.910 28 H 0.072 0.928 29 H 0.102 0.898 30 H 0.212 0.788 31 H 0.195 0.805 32 H 0.443 0.557 33 H 0.135 0.865 34 H 0.154 0.846 35 H 0.150 0.850 36 H 0.140 0.860 37 H 0.106 0.894 38 H 0.285 0.715 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.439 22.882 6.175 30.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.056 3.944 3 N -0.278 5.278 4 C -0.001 4.001 5 C -0.277 4.277 6 C 0.142 3.858 7 N -0.292 5.292 8 C 0.289 3.711 9 O -0.378 6.378 10 C -0.122 4.122 11 C -0.032 4.032 12 C -0.187 4.187 13 C -0.097 4.097 14 C -0.259 4.259 15 C 0.069 3.931 16 O -0.155 6.155 17 C -0.475 4.475 18 H 0.095 0.905 19 C -0.189 4.189 20 N -0.565 5.565 21 Si 0.794 3.206 22 H -0.186 1.186 23 H -0.190 1.190 24 H -0.191 1.191 25 C -0.198 4.198 26 N -0.281 5.281 27 H 0.108 0.892 28 H 0.091 0.909 29 H 0.120 0.880 30 H 0.228 0.772 31 H 0.212 0.788 32 H 0.286 0.714 33 H 0.153 0.847 34 H 0.172 0.828 35 H 0.168 0.832 36 H 0.157 0.843 37 H 0.124 0.876 38 H 0.095 0.905 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 17.506 22.650 5.976 29.243 hybrid contribution 0.500 -0.748 -0.581 1.071 sum 18.005 21.902 5.395 28.862 Atomic orbital electron populations 1.20590 0.85202 1.04181 1.04248 1.23454 0.98929 0.82659 0.89329 1.68320 1.11865 1.29486 1.18166 1.23780 0.88649 1.00012 0.87649 1.22682 1.04510 0.90946 1.09556 1.19201 0.88847 0.87637 0.90129 1.43568 1.12140 1.02291 1.71209 1.21507 0.87828 0.86188 0.75569 1.90887 1.16579 1.87111 1.43215 1.20726 0.97015 0.85817 1.08637 1.19195 0.96469 0.95492 0.92076 1.21027 1.01462 0.99006 0.97188 1.21118 0.94988 0.96020 0.97580 1.21331 1.06140 1.04921 0.93460 1.19610 0.92748 0.93863 0.86884 1.83510 1.47664 1.53602 1.30718 1.20687 1.13431 1.17352 0.96079 0.90477 1.25294 0.95347 0.94572 1.03676 1.69732 1.26089 1.26259 1.34446 0.85208 0.78555 0.79473 0.77394 1.18578 1.19049 1.19139 1.20276 1.00920 0.98507 1.00120 1.68231 1.09381 1.31492 1.19006 0.89200 0.90938 0.87983 0.77181 0.78811 0.71428 0.84715 0.82846 0.83213 0.84267 0.87636 0.90534 0.86091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.90 10.32 71.24 0.73 -1.17 16 2 C 0.32 8.56 7.64 138.76 1.06 9.62 16 3 N -0.56 -12.23 10.33 -188.06 -1.94 -14.17 16 4 C 0.16 2.22 11.29 84.59 0.96 3.17 16 5 C -0.25 -3.03 10.04 22.57 0.23 -2.80 16 6 C 0.38 8.03 7.44 132.98 0.99 9.02 16 7 N -0.64 -10.09 5.38 -308.00 -1.66 -11.75 16 8 C 0.50 12.03 7.77 87.66 0.68 12.71 16 9 O -0.51 -18.88 14.37 -2.99 -0.04 -18.92 16 10 C -0.08 -1.48 5.83 29.10 0.17 -1.31 16 11 C -0.03 -0.98 4.37 -19.88 -0.09 -1.07 16 12 C -0.17 -5.16 9.70 22.30 0.22 -4.94 16 13 C -0.08 -2.88 10.04 22.25 0.22 -2.66 16 14 C -0.24 -11.20 9.13 22.39 0.20 -10.99 16 15 C 0.12 5.85 6.65 22.57 0.15 6.00 16 16 O -0.25 -14.16 8.59 -22.72 -0.20 -14.36 16 17 C -0.40 -24.65 9.90 67.92 0.67 -23.97 16 18 H 0.08 5.01 5.53 -2.91 -0.02 4.99 16 19 C 0.01 0.55 5.49 84.83 0.47 1.02 16 20 N -0.92 -56.97 13.96 21.61 0.30 -56.67 16 21 Si 0.97 47.05 28.62 68.60 1.96 49.01 16 22 H -0.26 -11.95 7.11 99.48 0.71 -11.25 16 23 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 24 H -0.27 -13.06 7.11 99.48 0.71 -12.36 16 25 C -0.18 -7.22 9.65 22.39 0.22 -7.01 16 26 N -0.56 -16.63 7.99 -185.20 -1.48 -18.11 16 27 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 29 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.21 0.91 8.06 -2.91 -0.02 0.89 16 31 H 0.19 0.34 8.06 -2.91 -0.02 0.31 16 32 H 0.44 1.90 8.72 -92.71 -0.81 1.09 16 33 H 0.13 1.69 8.08 -2.39 -0.02 1.67 16 34 H 0.15 1.29 8.08 -2.39 -0.02 1.27 16 35 H 0.15 3.33 8.06 -2.91 -0.02 3.30 16 36 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 37 H 0.11 5.42 5.71 -2.91 -0.02 5.40 16 38 H 0.29 16.05 8.31 -92.71 -0.77 15.28 16 39 H 0.12 4.59 8.06 -2.91 -0.02 4.56 16 Total: -1.00 -89.89 344.98 4.12 -85.77 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: 0.29 Total: 13.58 kcal Atomic # 6 Polarization: -21.26 SS G_CDS: 6.88 Total: -14.38 kcal Atomic # 7 Polarization: -95.92 SS G_CDS: -4.78 Total: -100.70 kcal Atomic # 8 Polarization: -33.04 SS G_CDS: -0.24 Total: -33.28 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 1.96 Total: 49.01 kcal Total: -89.89 4.12 -85.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760471817.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.767 kcal (2) G-P(sol) polarization free energy of solvation -89.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds