Wall clock time and date at job start Fri Apr 10 2020 22:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38217 * 120.40819 * 2 1 4 4 C 1.39491 * 118.33425 * 180.02562 * 3 2 1 5 5 N 1.39051 * 120.51969 * 179.97438 * 4 3 2 6 6 C 1.34774 * 119.99783 * 174.89393 * 5 4 3 7 7 O 1.21267 * 120.00250 * 5.10418 * 6 5 4 8 8 C 1.50706 * 120.00027 * 185.10435 * 6 5 4 9 9 C 1.50700 * 109.47076 * 180.02562 * 8 6 5 10 10 C 1.38327 * 119.96537 * 270.02221 * 9 8 6 11 11 C 1.38278 * 120.13893 * 179.97438 * 10 9 8 12 12 C 1.38130 * 120.06585 * 359.76148 * 11 10 9 13 13 C 1.38852 * 119.93271 * 0.51092 * 12 11 10 14 14 O 1.35752 * 120.07305 * 179.74527 * 13 12 11 15 15 C 1.34832 * 116.99427 * 354.16928 * 14 13 12 16 16 H 1.08000 * 120.00269 * 5.04436 * 15 14 13 17 17 C 1.38656 * 119.99932 * 185.03350 * 15 14 13 18 18 N 1.31559 * 119.99833 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00249 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47208 * 60.00483 * 19 17 15 21 21 H 1.48494 * 109.47360 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47140 * 300.00540 * 19 17 15 23 23 C 1.38083 * 119.96431 * 89.99750 * 9 8 6 24 24 N 1.32916 * 118.95571 * 0.24905 * 4 3 2 25 25 C 1.31740 * 120.70856 * 359.49019 * 24 4 3 26 26 N 1.31807 * 121.82236 * 0.52279 * 25 24 4 27 27 H 1.08997 * 109.47302 * 90.00027 * 1 2 3 28 28 H 1.08998 * 109.47452 * 210.00153 * 1 2 3 29 29 H 1.09003 * 109.47016 * 330.00221 * 1 2 3 30 30 H 1.08003 * 120.83285 * 0.03862 * 3 2 1 31 31 H 0.96993 * 120.00464 * 354.90130 * 5 4 3 32 32 H 1.08994 * 109.47114 * 60.00275 * 8 6 5 33 33 H 1.09001 * 109.46656 * 299.99761 * 8 6 5 34 34 H 1.07992 * 119.93000 * 359.97438 * 10 9 8 35 35 H 1.07994 * 119.96652 * 180.02562 * 11 10 9 36 36 H 1.08006 * 120.03300 * 180.27730 * 12 11 10 37 37 H 0.97000 * 119.99674 * 179.97438 * 18 17 15 38 38 H 1.07990 * 120.03582 * 0.04773 * 23 9 8 39 39 H 1.08000 * 119.09010 * 180.26827 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2066 1.1920 0.0000 4 6 3.6006 1.1416 -0.0005 5 7 4.3496 2.3131 -0.0011 6 6 5.6922 2.2546 0.1022 7 8 6.2540 1.1799 0.1025 8 6 6.4951 3.5247 0.2175 9 6 7.9600 3.1855 0.3184 10 6 8.5379 2.9803 1.5583 11 6 9.8816 2.6684 1.6550 12 6 10.6498 2.5558 0.5126 13 6 10.0739 2.7668 -0.7332 14 8 10.8275 2.6620 -1.8575 15 6 12.1517 2.4703 -1.6910 16 1 12.5560 2.3253 -0.7001 17 6 12.9944 2.4590 -2.7921 18 7 12.5019 2.6359 -3.9991 19 14 14.8288 2.1926 -2.5617 20 1 15.0607 0.8741 -1.9191 21 1 15.5037 2.2248 -3.8840 22 1 15.3806 3.2678 -1.6985 23 6 8.7238 3.0793 -0.8271 24 7 4.2016 -0.0440 -0.0061 25 6 3.4955 -1.1562 -0.0009 26 7 2.1775 -1.1427 -0.0004 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6870 2.1389 0.0006 31 1 3.9060 3.1724 -0.0758 32 1 6.1860 4.0703 1.1090 33 1 6.3256 4.1429 -0.6640 34 1 7.9384 3.0639 2.4527 35 1 10.3298 2.5083 2.6244 36 1 11.6982 2.3078 0.5884 37 1 13.0915 2.6284 -4.7694 38 1 8.2721 3.2399 -1.7947 39 1 4.0109 -2.1053 -0.0013 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760490558.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:50:26 Heat of formation + Delta-G solvation = 23.090002 kcal Electronic energy + Delta-G solvation = -24088.334610 eV Core-core repulsion = 20383.498762 eV Total energy + Delta-G solvation = -3704.835849 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.43355 -39.78655 -38.78575 -36.57511 -35.49574 -34.14776 -32.48469 -32.14259 -31.36938 -29.21971 -28.75755 -27.19576 -25.24954 -24.45170 -23.34559 -21.64784 -21.15546 -20.38516 -18.36455 -17.75606 -17.52012 -16.87380 -16.25501 -15.85751 -15.72766 -15.20817 -15.14179 -14.88920 -14.38682 -14.30296 -14.00204 -13.54186 -13.44597 -13.28594 -13.25059 -12.73646 -12.62971 -12.42282 -11.99214 -11.61114 -11.36699 -11.24811 -10.96587 -10.82075 -10.77818 -10.61348 -10.43959 -10.17235 -10.07312 -9.31736 -9.06796 -8.99930 -8.79993 -8.06330 -7.19569 -6.40708 -3.99784 0.73516 0.94245 2.03666 2.40431 2.65902 2.67203 3.15942 3.17098 3.19634 3.69954 3.87099 3.99787 4.00249 4.35671 4.56227 4.74235 4.79408 4.86777 5.06789 5.11458 5.16565 5.18615 5.22057 5.36787 5.44863 5.58120 5.63535 5.75420 5.88174 5.94348 6.19109 6.35243 6.38524 6.59692 6.69674 6.93346 7.09559 7.20491 7.26425 7.39076 7.46602 7.84241 7.98409 8.04142 8.17971 9.04874 9.75481 10.77469 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.023758 B = 0.002495 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.284038 B =11219.202753 C =11693.729885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.192 3.808 3 C -0.271 4.271 4 C 0.412 3.588 5 N -0.662 5.662 6 C 0.499 3.501 7 O -0.440 6.440 8 C -0.089 4.089 9 C -0.038 4.038 10 C -0.195 4.195 11 C -0.074 4.074 12 C -0.228 4.228 13 C 0.154 3.846 14 O -0.179 6.179 15 C -0.391 4.391 16 H 0.091 0.909 17 C 0.039 3.961 18 N -0.864 5.864 19 Si 0.941 3.059 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.270 1.270 23 C -0.173 4.173 24 N -0.516 5.516 25 C 0.331 3.669 26 N -0.550 5.550 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.145 0.855 31 H 0.419 0.581 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.108 0.892 36 H 0.127 0.873 37 H 0.270 0.730 38 H 0.114 0.886 39 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.720 1.435 9.246 23.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.048 3.952 3 C -0.297 4.297 4 C 0.172 3.828 5 N -0.310 5.310 6 C 0.285 3.715 7 O -0.305 6.305 8 C -0.129 4.129 9 C -0.039 4.039 10 C -0.214 4.214 11 C -0.093 4.093 12 C -0.248 4.248 13 C 0.101 3.899 14 O -0.082 6.082 15 C -0.467 4.467 16 H 0.108 0.892 17 C -0.165 4.165 18 N -0.500 5.500 19 Si 0.765 3.235 20 H -0.195 1.195 21 H -0.203 1.203 22 H -0.195 1.195 23 C -0.192 4.192 24 N -0.237 5.237 25 C 0.042 3.958 26 N -0.268 5.268 27 H 0.103 0.897 28 H 0.101 0.899 29 H 0.097 0.903 30 H 0.163 0.837 31 H 0.256 0.744 32 H 0.120 0.880 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.126 0.874 36 H 0.144 0.856 37 H 0.080 0.920 38 H 0.132 0.868 39 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -20.645 -0.114 8.762 22.428 hybrid contribution 0.365 1.092 0.093 1.155 sum -20.280 0.978 8.855 22.150 Atomic orbital electron populations 1.20762 0.87849 1.03949 1.03642 1.21456 0.97409 0.87631 0.88723 1.22055 0.93176 1.01245 1.13199 1.18768 0.87914 0.87277 0.88861 1.43885 1.07872 1.06986 1.72290 1.21229 0.80825 0.92725 0.76757 1.90885 1.68657 1.30142 1.40771 1.20600 0.92993 0.94506 1.04810 1.18601 0.91689 1.00269 0.93321 1.20338 0.95326 1.10084 0.95659 1.20679 0.93653 0.97732 0.97202 1.21189 1.01180 1.10180 0.92220 1.19268 0.91221 0.92383 0.87038 1.83978 1.19900 1.78097 1.26258 1.21271 0.79400 1.50956 0.95118 0.89157 1.25279 1.00231 0.96703 0.94327 1.70034 1.36044 1.45812 0.98060 0.85786 0.80554 0.79201 0.77910 1.19507 1.20313 1.19532 1.19941 0.92180 1.09464 0.97604 1.68511 1.40474 0.97374 1.17350 1.24992 0.86153 0.96443 0.88209 1.68295 1.10434 1.30016 1.18084 0.89698 0.89889 0.90250 0.83687 0.74428 0.87954 0.87845 0.87939 0.87427 0.85574 0.92035 0.86803 0.78433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.58 10.22 36.01 0.37 -0.21 16 2 C 0.19 1.82 6.82 -82.31 -0.56 1.26 16 3 C -0.27 -2.42 9.72 -39.12 -0.38 -2.80 16 4 C 0.41 5.05 7.45 -154.40 -1.15 3.90 16 5 N -0.66 -6.94 5.38 -11.28 -0.06 -7.00 16 6 C 0.50 7.16 7.78 -10.98 -0.09 7.08 16 7 O -0.44 -8.69 14.35 5.57 0.08 -8.61 16 8 C -0.09 -1.11 5.83 -29.03 -0.17 -1.28 16 9 C -0.04 -0.69 4.37 -104.65 -0.46 -1.14 16 10 C -0.20 -3.49 9.70 -39.53 -0.38 -3.88 16 11 C -0.07 -1.43 10.04 -39.61 -0.40 -1.83 16 12 C -0.23 -5.17 9.17 -39.39 -0.36 -5.53 16 13 C 0.15 3.87 6.65 -39.11 -0.26 3.61 16 14 O -0.18 -5.25 9.76 0.04 0.00 -5.25 16 15 C -0.39 -11.20 9.49 30.89 0.29 -10.91 16 16 H 0.09 2.39 5.21 -52.49 -0.27 2.12 16 17 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 18 N -0.86 -25.83 13.67 55.48 0.76 -25.07 16 19 Si 0.94 20.93 29.55 -169.99 -5.02 15.91 16 20 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 21 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 22 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 23 C -0.17 -3.76 9.65 -39.39 -0.38 -4.14 16 24 N -0.52 -7.81 8.05 -13.73 -0.11 -7.92 16 25 C 0.33 4.22 12.28 -92.19 -1.13 3.08 16 26 N -0.55 -6.45 10.37 -10.87 -0.11 -6.56 16 27 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.27 8.09 -51.93 -0.42 -0.15 16 30 H 0.15 0.75 8.06 -52.48 -0.42 0.32 16 31 H 0.42 2.37 8.72 -40.82 -0.36 2.01 16 32 H 0.10 0.92 8.09 -51.93 -0.42 0.50 16 33 H 0.10 1.04 8.08 -51.93 -0.42 0.62 16 34 H 0.10 1.55 8.06 -52.49 -0.42 1.12 16 35 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 36 H 0.13 2.84 5.64 -52.48 -0.30 2.54 16 37 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.11 2.40 8.06 -52.49 -0.42 1.98 16 39 H 0.20 2.02 8.06 -52.49 -0.42 1.60 16 LS Contribution 345.82 15.07 5.21 5.21 Total: -1.00 -37.79 345.82 -8.69 -46.48 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -4.28 Total: 4.61 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -5.15 Total: -11.80 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: 0.47 Total: -46.56 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: 0.08 Total: -13.86 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -37.79 -8.69 -46.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760490558.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.570 kcal (2) G-P(sol) polarization free energy of solvation -37.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds