Wall clock time and date at job start Fri Apr 10 2020 22:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48495 * 109.47182 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47069 * 300.00245 * 3 2 1 6 6 H 1.48505 * 109.47042 * 60.00062 * 3 2 1 7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7 12 12 C 1.38080 * 119.93037 * 179.72269 * 11 10 9 13 13 C 1.38324 * 120.06728 * 0.56797 * 12 11 10 14 14 C 1.38283 * 120.13947 * 359.68120 * 13 12 11 15 15 C 1.50702 * 119.96579 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.47204 * 270.02222 * 15 14 13 17 17 O 1.21282 * 119.99807 * 359.97438 * 16 15 14 18 18 N 1.34768 * 119.99934 * 179.97438 * 16 15 14 19 19 C 1.46502 * 120.00166 * 179.97438 * 18 16 15 20 20 C 1.50693 * 109.47399 * 179.97438 * 19 18 16 21 21 N 1.31790 * 119.12572 * 269.72944 * 20 19 18 22 22 C 1.32337 * 120.81813 * 179.75689 * 21 20 19 23 23 C 1.38596 * 119.10294 * 0.51288 * 22 21 20 24 24 C 1.38597 * 118.40336 * 359.74374 * 23 22 21 25 25 N 1.31798 * 119.11892 * 90.00247 * 20 19 18 26 26 C 1.38123 * 120.06577 * 0.04594 * 14 13 12 27 27 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.03226 * 359.97438 * 11 10 9 29 29 H 1.07993 * 119.96486 * 180.27241 * 12 11 10 30 30 H 1.08001 * 119.93050 * 179.70445 * 13 12 11 31 31 H 1.08997 * 109.47004 * 30.02720 * 15 14 13 32 32 H 1.08999 * 109.46889 * 150.02243 * 15 14 13 33 33 H 0.97004 * 120.00079 * 0.02562 * 18 16 15 34 34 H 1.09004 * 109.47060 * 300.00868 * 19 18 16 35 35 H 1.09005 * 109.46669 * 60.00018 * 19 18 16 36 36 H 1.07998 * 120.44886 * 180.23648 * 22 21 20 37 37 H 1.07999 * 120.79977 * 179.77414 * 23 22 21 38 38 H 1.07996 * 120.44780 * 180.02562 * 24 23 22 39 39 H 1.08006 * 120.03219 * 180.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7096 1.3463 -0.0006 5 1 1.8909 2.3964 -1.2124 6 1 1.8910 2.3964 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0698 -3.5048 0.1041 11 6 3.4573 -3.4403 0.0852 12 6 4.2023 -4.5972 0.1986 13 6 3.5684 -5.8208 0.3192 14 6 2.1873 -5.8888 0.3331 15 6 1.5008 -7.2238 0.4651 16 6 1.2649 -7.8051 -0.9051 17 8 1.6189 -7.1951 -1.8917 18 7 0.6605 -9.0028 -1.0340 19 6 0.4306 -9.5676 -2.3661 20 6 -0.2547 -10.9032 -2.2340 21 7 0.4788 -11.9940 -2.1388 22 6 -0.0878 -13.1836 -2.0167 23 6 -1.4708 -13.2730 -2.0005 24 6 -2.2083 -12.1045 -2.1081 25 7 -1.5718 -10.9499 -2.2221 26 6 1.4365 -4.7345 0.2256 27 1 -0.4849 0.8401 -0.0004 28 1 3.9527 -2.4857 -0.0140 29 1 5.2811 -4.5473 0.1885 30 1 4.1534 -6.7248 0.4030 31 1 2.1300 -7.9003 1.0435 32 1 0.5456 -7.0924 0.9735 33 1 0.3769 -9.4904 -0.2449 34 1 -0.1992 -8.8911 -2.9439 35 1 1.3856 -9.6985 -2.8750 36 1 0.5191 -14.0732 -1.9354 37 1 -1.9620 -14.2302 -1.9057 38 1 -3.2878 -12.1359 -2.0986 39 1 0.3579 -4.7882 0.2370 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000770063382.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:50:41 Heat of formation + Delta-G solvation = -11.441276 kcal Electronic energy + Delta-G solvation = -23705.751351 eV Core-core repulsion = 19999.418113 eV Total energy + Delta-G solvation = -3706.333237 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.11220 -41.09210 -40.34331 -38.21492 -36.17243 -34.76418 -34.33681 -33.65389 -32.96431 -30.89861 -29.37680 -27.68523 -27.07711 -25.53268 -23.84257 -23.24748 -22.71651 -21.54655 -19.55455 -18.92094 -18.61408 -18.44992 -17.68220 -17.01937 -16.83214 -16.60844 -16.10735 -16.08148 -16.00327 -15.60875 -15.46509 -14.98069 -14.73680 -14.53885 -14.34919 -14.04446 -13.94645 -13.90711 -13.56244 -12.97395 -12.77029 -12.47940 -12.36951 -12.21146 -12.07466 -11.92630 -11.89052 -11.19651 -11.14046 -10.80271 -10.56440 -10.28603 -10.23276 -9.62727 -8.96475 -8.46281 -6.14663 -0.24922 0.11834 0.53299 0.77282 1.34352 1.43349 1.53415 1.63236 2.06580 2.18391 2.69076 2.81781 2.92977 3.16437 3.19574 3.45191 3.73817 3.78831 3.96083 4.11258 4.13652 4.17310 4.32691 4.36429 4.40724 4.45768 4.59312 4.63365 4.64524 4.75621 4.89471 5.07891 5.14325 5.24506 5.32474 5.39025 5.66498 5.74229 5.76782 5.99206 6.04047 6.24269 6.45019 6.98304 7.02426 7.20748 7.80481 8.77640 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.027430 B = 0.002226 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.527070 B =12577.396582 C =13271.544039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.026 4.026 3 Si 1.021 2.979 4 H -0.252 1.252 5 H -0.269 1.269 6 H -0.266 1.266 7 C -0.413 4.413 8 H 0.101 0.899 9 O -0.235 6.235 10 C 0.111 3.889 11 C -0.245 4.245 12 C -0.074 4.074 13 C -0.179 4.179 14 C -0.027 4.027 15 C -0.088 4.088 16 C 0.520 3.480 17 O -0.573 6.573 18 N -0.710 5.710 19 C 0.194 3.806 20 C 0.288 3.712 21 N -0.526 5.526 22 C 0.136 3.864 23 C -0.202 4.202 24 C 0.134 3.866 25 N -0.532 5.532 26 C -0.192 4.192 27 H 0.272 0.728 28 H 0.118 0.882 29 H 0.146 0.854 30 H 0.148 0.852 31 H 0.145 0.855 32 H 0.122 0.878 33 H 0.413 0.587 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.203 0.797 37 H 0.191 0.809 38 H 0.199 0.801 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.388 -30.509 0.553 30.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.223 4.223 3 Si 0.840 3.160 4 H -0.175 1.175 5 H -0.194 1.194 6 H -0.191 1.191 7 C -0.489 4.489 8 H 0.118 0.882 9 O -0.142 6.142 10 C 0.061 3.939 11 C -0.265 4.265 12 C -0.092 4.092 13 C -0.197 4.197 14 C -0.027 4.027 15 C -0.127 4.127 16 C 0.308 3.692 17 O -0.451 6.451 18 N -0.364 5.364 19 C 0.068 3.932 20 C 0.019 3.981 21 N -0.241 5.241 22 C -0.028 4.028 23 C -0.223 4.223 24 C -0.031 4.031 25 N -0.247 5.247 26 C -0.212 4.212 27 H 0.081 0.919 28 H 0.136 0.864 29 H 0.164 0.836 30 H 0.166 0.834 31 H 0.163 0.837 32 H 0.140 0.860 33 H 0.250 0.750 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.220 0.780 37 H 0.209 0.791 38 H 0.216 0.784 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.093 -29.037 -0.285 29.039 hybrid contribution -0.617 0.149 0.077 0.639 sum -0.710 -28.888 -0.209 28.897 Atomic orbital electron populations 1.70205 1.08040 1.28668 1.49207 1.26638 0.96924 1.02799 0.95962 0.84497 0.78186 0.74683 0.78596 1.17492 1.19415 1.19069 1.21871 0.92510 0.81493 1.53018 0.88208 1.83937 1.35924 1.12562 1.81768 1.19878 0.91694 0.87915 0.94412 1.21302 0.93098 1.00275 1.11792 1.21137 1.00250 0.91459 0.96332 1.20986 0.93463 0.98089 1.07207 1.19168 0.93801 0.92726 0.97024 1.20678 1.04370 0.93733 0.93941 1.20935 0.76254 0.80141 0.91892 1.90766 1.51809 1.60843 1.41644 1.45641 1.61617 1.20477 1.08709 1.19711 0.99725 0.87743 0.85998 1.22697 0.86924 0.94273 0.94193 1.68261 1.42388 0.99967 1.13521 1.23979 0.94154 0.95508 0.89198 1.23430 0.96045 1.02593 1.00220 1.23942 1.02843 0.86968 0.89318 1.68269 1.10634 1.31997 1.13844 1.20226 0.99297 0.90508 1.11149 0.91877 0.86448 0.83630 0.83413 0.83678 0.86003 0.75044 0.90491 0.89580 0.78008 0.79148 0.78449 0.87579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.85 13.67 21.61 0.30 -58.56 16 2 C -0.03 -1.56 5.49 84.83 0.47 -1.10 16 3 Si 1.02 44.75 29.55 68.60 2.03 46.78 16 4 H -0.25 -10.21 7.11 99.48 0.71 -9.50 16 5 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 6 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 7 C -0.41 -25.32 9.49 67.92 0.64 -24.68 16 8 H 0.10 5.65 5.21 -2.91 -0.02 5.64 16 9 O -0.23 -15.04 9.76 -22.74 -0.22 -15.26 16 10 C 0.11 5.98 6.65 22.58 0.15 6.13 16 11 C -0.25 -11.59 9.17 22.39 0.21 -11.38 16 12 C -0.07 -2.76 10.04 22.25 0.22 -2.54 16 13 C -0.18 -6.06 9.70 22.30 0.22 -5.84 16 14 C -0.03 -0.96 4.37 -19.88 -0.09 -1.05 16 15 C -0.09 -2.16 5.83 29.10 0.17 -1.99 16 16 C 0.52 14.98 7.82 87.66 0.69 15.67 16 17 O -0.57 -22.93 16.03 -3.04 -0.05 -22.98 16 18 N -0.71 -15.50 5.55 -466.79 -2.59 -18.09 16 19 C 0.19 4.51 6.11 85.63 0.52 5.03 16 20 C 0.29 5.69 7.01 138.75 0.97 6.66 16 21 N -0.53 -9.04 10.33 -187.85 -1.94 -10.98 16 22 C 0.14 1.23 11.31 84.70 0.96 2.18 16 23 C -0.20 -1.09 10.17 22.44 0.23 -0.86 16 24 C 0.13 1.37 11.31 84.70 0.96 2.32 16 25 N -0.53 -9.92 10.33 -187.85 -1.94 -11.87 16 26 C -0.19 -8.95 9.65 22.39 0.22 -8.73 16 27 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 28 H 0.12 5.60 5.64 -2.91 -0.02 5.58 16 29 H 0.15 4.28 8.06 -2.91 -0.02 4.26 16 30 H 0.15 3.76 8.06 -2.91 -0.02 3.74 16 31 H 0.15 2.28 8.08 -2.39 -0.02 2.26 16 32 H 0.12 2.54 8.08 -2.39 -0.02 2.52 16 33 H 0.41 6.58 8.46 -92.71 -0.78 5.79 16 34 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 35 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16 36 H 0.20 0.33 8.06 -2.91 -0.02 0.31 16 37 H 0.19 -0.56 8.06 -2.91 -0.02 -0.58 16 38 H 0.20 0.71 8.06 -2.91 -0.02 0.69 16 39 H 0.11 4.93 8.06 -2.91 -0.02 4.91 16 Total: -1.00 -89.75 349.08 2.42 -87.32 By element: Atomic # 1 Polarization: 23.48 SS G_CDS: 0.32 Total: 23.79 kcal Atomic # 6 Polarization: -26.70 SS G_CDS: 6.53 Total: -20.17 kcal Atomic # 7 Polarization: -93.31 SS G_CDS: -6.18 Total: -99.49 kcal Atomic # 8 Polarization: -37.97 SS G_CDS: -0.27 Total: -38.24 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -89.75 2.42 -87.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770063382.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.882 kcal (2) G-P(sol) polarization free energy of solvation -89.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds