Wall clock time and date at job start Fri Apr 10 2020 22:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38024 * 119.93981 * 2 1 4 4 C 1.38099 * 120.32845 * 179.76544 * 3 2 1 5 5 C 1.50701 * 119.89976 * 180.22836 * 4 3 2 6 6 C 1.39752 * 120.20110 * 0.46427 * 4 3 2 7 7 C 1.47840 * 120.06089 * 179.79041 * 6 4 3 8 8 O 1.21574 * 120.00021 * 353.15396 * 7 6 4 9 9 N 1.34780 * 119.99717 * 173.15989 * 7 6 4 10 10 C 1.40524 * 119.99775 * 180.02562 * 9 7 6 11 11 C 1.40661 * 126.08595 * 359.97438 * 10 9 7 12 12 N 1.30907 * 108.38931 * 179.72424 * 11 10 9 13 13 N 1.40068 * 108.40831 * 0.44024 * 12 11 10 14 14 C 1.37318 * 126.06689 * 179.81246 * 13 12 11 15 15 H 1.08002 * 119.99827 * 187.84360 * 14 13 12 16 16 C 1.38986 * 120.00080 * 7.57730 * 14 13 12 17 17 N 1.31294 * 119.99749 * 351.43809 * 16 14 13 18 18 Si 1.86799 * 120.00003 * 171.44517 * 16 14 13 19 19 H 1.48503 * 109.47151 * 94.89863 * 18 16 14 20 20 H 1.48498 * 109.46925 * 214.89511 * 18 16 14 21 21 H 1.48499 * 109.47155 * 334.89707 * 18 16 14 22 22 C 1.35698 * 126.08317 * 180.02562 * 10 9 7 23 23 C 1.39242 * 119.87409 * 359.51388 * 6 4 3 24 24 C 1.39620 * 119.67752 * 0.25150 * 23 6 4 25 25 C 1.47192 * 120.09786 * 179.97438 * 24 23 6 26 26 O 1.21251 * 119.99629 * 175.44559 * 25 24 23 27 27 H 1.09005 * 109.47319 * 262.29152 * 1 2 3 28 28 H 1.08996 * 109.47359 * 22.29915 * 1 2 3 29 29 H 1.08999 * 109.46937 * 142.29692 * 1 2 3 30 30 H 1.08000 * 119.83731 * 0.02562 * 3 2 1 31 31 H 1.08997 * 109.47212 * 262.80536 * 5 4 3 32 32 H 1.09002 * 109.47225 * 22.80765 * 5 4 3 33 33 H 1.09008 * 109.46935 * 142.80139 * 5 4 3 34 34 H 0.96999 * 120.00224 * 359.97438 * 9 7 6 35 35 H 1.07998 * 125.80775 * 0.02562 * 11 10 9 36 36 H 0.97001 * 119.99571 * 179.97438 * 17 16 14 37 37 H 1.07999 * 126.24792 * 0.02562 * 22 10 9 38 38 H 1.07997 * 120.16115 * 180.27582 * 23 6 4 39 39 H 1.07995 * 119.99581 * 355.44732 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1961 0.0000 4 6 3.5768 1.2054 0.0049 5 6 4.3191 2.5169 0.0100 6 6 4.2880 0.0024 0.0001 7 6 5.7664 0.0161 0.0006 8 8 6.3646 1.0675 -0.1202 9 7 6.4509 -1.1371 0.1351 10 6 7.8560 -1.1241 0.1361 11 6 8.6741 0.0127 0.0059 12 7 9.9248 -0.3703 0.0586 13 7 9.9550 -1.7620 0.2138 14 6 11.0822 -2.5409 0.3059 15 1 10.9968 -3.6175 0.2970 16 6 12.3333 -1.9437 0.4050 17 7 12.4564 -0.6468 0.2423 18 14 13.8397 -2.9865 0.7696 19 1 14.5067 -3.3553 -0.5049 20 1 14.7834 -2.2138 1.6166 21 1 13.4265 -4.2194 1.4869 22 6 8.6652 -2.2061 0.2621 23 6 3.6016 -1.2091 0.0006 24 6 2.2054 -1.2126 0.0006 25 6 1.4705 -2.4879 0.0005 26 8 0.2608 -2.4904 0.0839 27 1 -0.3634 -0.1378 1.0184 28 1 -0.3634 0.9508 -0.3899 29 1 -0.3633 -0.8131 -0.6285 30 1 1.6522 2.1292 0.0004 31 1 4.6137 2.7717 -1.0080 32 1 3.6723 3.2990 0.4077 33 1 5.2084 2.4286 0.6344 34 1 5.9735 -1.9760 0.2318 35 1 8.3291 1.0293 -0.1122 36 1 13.3295 -0.2300 0.3119 37 1 8.3468 -3.2315 0.3790 38 1 4.1466 -2.1415 0.0014 39 1 2.0087 -3.4212 -0.0737 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793287712.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:51:31 Heat of formation + Delta-G solvation = 22.892322 kcal Electronic energy + Delta-G solvation = -24517.748681 eV Core-core repulsion = 20812.904260 eV Total energy + Delta-G solvation = -3704.844421 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.90403 -41.21700 -40.18237 -38.77068 -36.07756 -35.09971 -34.21627 -33.33671 -32.19986 -30.03478 -28.72845 -28.35851 -26.69719 -24.52679 -23.49225 -23.01219 -22.69320 -21.19525 -20.83533 -19.32177 -18.50418 -17.66103 -17.39943 -16.79507 -16.38683 -16.22971 -15.96886 -15.78859 -15.60747 -15.37569 -15.13155 -14.93090 -14.80474 -14.48396 -14.28192 -13.80353 -13.49042 -13.40180 -13.20254 -12.95057 -12.84340 -12.81124 -12.71785 -12.56675 -12.43550 -12.07600 -11.80505 -11.00011 -10.79114 -10.62005 -10.34399 -10.08561 -9.89708 -9.78320 -8.49793 -8.46540 -6.22248 -0.43410 -0.07147 1.24371 1.37646 1.41244 1.58982 1.70883 1.96839 2.04224 2.27978 2.49624 2.85117 2.92530 3.09211 3.32464 3.62018 3.68597 3.81447 3.98871 4.24508 4.46428 4.47387 4.55147 4.60740 4.66419 4.69898 4.78708 4.83047 4.91147 4.96488 5.03402 5.07732 5.15396 5.26478 5.32531 5.45584 5.48379 5.57604 5.77831 5.98026 6.33751 6.52511 6.73884 6.75837 7.37467 7.49063 7.70287 8.53133 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.027448 B = 0.002699 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.850875 B =10369.887027 C =11353.592090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.006 4.006 3 C -0.147 4.147 4 C 0.001 3.999 5 C -0.122 4.122 6 C -0.166 4.166 7 C 0.540 3.460 8 O -0.561 6.561 9 N -0.610 5.610 10 C -0.043 4.043 11 C -0.057 4.057 12 N -0.313 5.313 13 N -0.169 5.169 14 C -0.355 4.355 15 H 0.141 0.859 16 C -0.006 4.006 17 N -0.825 5.825 18 Si 1.017 2.983 19 H -0.265 1.265 20 H -0.279 1.279 21 H -0.243 1.243 22 C -0.077 4.077 23 C -0.015 4.015 24 C -0.218 4.218 25 C 0.390 3.610 26 O -0.488 6.488 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.154 0.846 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.418 0.582 35 H 0.169 0.831 36 H 0.276 0.724 37 H 0.191 0.809 38 H 0.168 0.832 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.306 -4.304 0.379 20.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.006 4.006 3 C -0.165 4.165 4 C 0.000 4.000 5 C -0.178 4.178 6 C -0.169 4.169 7 C 0.330 3.670 8 O -0.442 6.442 9 N -0.255 5.255 10 C -0.150 4.150 11 C -0.233 4.233 12 N -0.145 5.145 13 N 0.062 4.938 14 C -0.485 4.485 15 H 0.159 0.841 16 C -0.218 4.218 17 N -0.453 5.453 18 Si 0.836 3.164 19 H -0.189 1.189 20 H -0.204 1.204 21 H -0.166 1.166 22 C -0.227 4.227 23 C -0.034 4.034 24 C -0.219 4.219 25 C 0.252 3.748 26 O -0.363 6.363 27 H 0.098 0.902 28 H 0.096 0.904 29 H 0.103 0.897 30 H 0.172 0.828 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.256 0.744 35 H 0.186 0.814 36 H 0.085 0.915 37 H 0.208 0.792 38 H 0.185 0.815 39 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -19.163 -3.036 0.295 19.404 hybrid contribution 0.092 -0.347 0.090 0.370 sum -19.071 -3.383 0.385 19.372 Atomic orbital electron populations 1.21117 0.89093 1.03822 1.03567 1.20711 0.97515 0.92203 0.90188 1.21130 0.92215 0.99122 1.04023 1.20414 0.94136 0.94893 0.90564 1.21074 1.00483 0.93008 1.03261 1.19597 0.90979 0.95309 1.11036 1.18602 0.87762 0.83229 0.77443 1.90628 1.70737 1.31638 1.51163 1.42298 1.02801 1.10001 1.70395 1.17284 0.83431 0.93240 1.21006 1.24194 0.90395 0.99744 1.08936 1.78145 1.18619 0.90949 1.26808 1.44834 1.04615 1.04326 1.40038 1.20592 0.82795 0.91608 1.53545 0.84127 1.26869 1.03147 0.97290 0.94448 1.70405 1.25896 1.11957 1.36999 0.84612 0.74963 0.77959 0.78874 1.18949 1.20376 1.16606 1.22026 0.83977 0.99263 1.17453 1.21759 0.93257 0.97577 0.90776 1.20940 0.94017 0.96818 1.10167 1.24554 0.88613 0.92919 0.68715 1.90484 1.18802 1.90445 1.36602 0.90242 0.90411 0.89702 0.82816 0.90973 0.89900 0.90949 0.74388 0.81437 0.91451 0.79236 0.81512 0.83079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.80 8.70 71.24 0.62 -1.18 16 2 C -0.01 -0.10 5.93 -19.50 -0.12 -0.21 16 3 C -0.15 -2.73 9.26 22.19 0.21 -2.52 16 4 C 0.00 0.03 5.92 -19.53 -0.12 -0.09 16 5 C -0.12 -3.07 8.67 71.24 0.62 -2.45 16 6 C -0.17 -4.15 5.87 -20.13 -0.12 -4.26 16 7 C 0.54 18.17 7.66 86.78 0.66 18.84 16 8 O -0.56 -23.31 10.50 -3.95 -0.04 -23.35 16 9 N -0.61 -19.87 5.41 -306.52 -1.66 -21.52 16 10 C -0.04 -1.93 6.90 37.75 0.26 -1.67 16 11 C -0.06 -3.07 10.85 85.42 0.93 -2.14 16 12 N -0.31 -18.71 10.44 -56.46 -0.59 -19.30 16 13 N -0.17 -9.23 3.74 -190.00 -0.71 -9.94 16 14 C -0.35 -18.47 10.23 84.01 0.86 -17.61 16 15 H 0.14 6.31 7.85 -2.91 -0.02 6.28 16 16 C -0.01 -0.30 5.49 84.95 0.47 0.16 16 17 N -0.82 -47.42 11.86 21.66 0.26 -47.16 16 18 Si 1.02 38.15 29.56 68.60 2.03 40.17 16 19 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 20 H -0.28 -10.45 7.11 99.48 0.71 -9.75 16 21 H -0.24 -8.23 7.11 99.48 0.71 -7.52 16 22 C -0.08 -3.42 11.49 83.38 0.96 -2.46 16 23 C -0.01 -0.26 9.27 22.85 0.21 -0.04 16 24 C -0.22 -3.55 5.86 -20.18 -0.12 -3.67 16 25 C 0.39 5.00 11.40 70.17 0.80 5.81 16 26 O -0.49 -9.37 14.13 -2.94 -0.04 -9.41 16 27 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 28 H 0.08 0.90 8.02 -2.39 -0.02 0.88 16 29 H 0.08 1.45 5.88 -2.39 -0.01 1.44 16 30 H 0.15 2.10 8.03 -2.91 -0.02 2.08 16 31 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.08 1.57 8.03 -2.39 -0.02 1.55 16 33 H 0.07 2.29 5.92 -2.38 -0.01 2.27 16 34 H 0.42 9.32 6.89 -92.71 -0.64 8.68 16 35 H 0.17 9.04 5.91 -2.91 -0.02 9.02 16 36 H 0.28 14.59 8.31 -92.71 -0.77 13.82 16 37 H 0.19 6.45 8.06 -2.91 -0.02 6.43 16 38 H 0.17 1.65 6.45 -2.91 -0.02 1.63 16 39 H 0.15 0.59 8.06 -2.91 -0.02 0.57 16 Total: -1.00 -78.26 334.15 5.84 -72.41 By element: Atomic # 1 Polarization: 31.13 SS G_CDS: 0.48 Total: 31.61 kcal Atomic # 6 Polarization: -19.63 SS G_CDS: 6.12 Total: -13.50 kcal Atomic # 7 Polarization: -95.22 SS G_CDS: -2.70 Total: -97.92 kcal Atomic # 8 Polarization: -32.68 SS G_CDS: -0.08 Total: -32.76 kcal Atomic # 14 Polarization: 38.15 SS G_CDS: 2.03 Total: 40.17 kcal Total: -78.26 5.84 -72.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793287712.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.304 kcal (2) G-P(sol) polarization free energy of solvation -78.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds