Wall clock time and date at job start Fri Apr 10 2020 22:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30735 * 1 3 3 Si 1.86804 * 119.99979 * 2 1 4 4 H 1.48496 * 109.47139 * 239.99909 * 3 2 1 5 5 H 1.48499 * 109.46872 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47098 * 120.00129 * 3 2 1 7 7 C 1.40035 * 120.00114 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99892 * 170.18760 * 7 2 1 9 9 C 1.41541 * 119.99740 * 350.17454 * 7 2 1 10 10 C 1.41179 * 120.99369 * 151.68086 * 9 7 2 11 11 C 1.37586 * 119.01543 * 180.02562 * 10 9 7 12 12 N 1.32088 * 121.10798 * 359.71805 * 11 10 9 13 13 C 1.32466 * 122.23266 * 0.57732 * 12 11 10 14 14 N 1.39464 * 119.57990 * 179.70344 * 13 12 11 15 15 C 1.34768 * 120.00133 * 5.09532 * 14 13 12 16 16 O 1.21272 * 120.00360 * 354.97704 * 15 14 13 17 17 C 1.50708 * 120.00265 * 174.97779 * 15 14 13 18 18 O 1.42895 * 109.47279 * 179.97438 * 17 15 14 19 19 C 1.42896 * 113.99820 * 179.97438 * 18 17 15 20 20 C 1.50701 * 109.47367 * 180.02562 * 19 18 17 21 21 C 1.38233 * 119.61591 * 0.02665 * 20 19 18 22 22 C 1.38630 * 119.16339 * 179.74981 * 21 20 19 23 23 C 1.38677 * 118.41743 * 0.46741 * 22 21 20 24 24 C 1.38187 * 119.16120 * 359.51097 * 23 22 21 25 25 N 1.31852 * 119.62386 * 180.02562 * 20 19 18 26 26 C 1.38598 * 120.83637 * 359.42432 * 13 12 11 27 27 H 0.97004 * 120.00264 * 0.02562 * 1 2 3 28 28 H 1.07996 * 120.49299 * 0.02562 * 10 9 7 29 29 H 1.08001 * 119.44501 * 180.02562 * 11 10 9 30 30 H 0.97007 * 119.99763 * 185.09344 * 14 13 12 31 31 H 1.09003 * 109.46572 * 59.99603 * 17 15 14 32 32 H 1.08995 * 109.46700 * 300.00064 * 17 15 14 33 33 H 1.09003 * 109.47119 * 60.00719 * 19 18 17 34 34 H 1.08997 * 109.47818 * 300.00366 * 19 18 17 35 35 H 1.08004 * 120.41919 * 359.95181 * 21 20 19 36 36 H 1.07995 * 120.78831 * 180.23342 * 22 21 20 37 37 H 1.07996 * 120.41629 * 179.78649 * 23 22 21 38 38 H 1.07997 * 119.61343 * 180.25098 * 24 23 22 39 39 H 1.08008 * 120.60117 * 180.29838 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0951 1.6964 -1.2125 5 1 1.2763 2.7464 -0.0006 6 1 3.0951 1.6964 1.2125 7 6 2.0075 -1.2127 -0.0005 8 1 3.0757 -1.2194 -0.1599 9 6 1.3154 -2.4296 0.2081 10 6 1.7909 -3.6399 -0.3416 11 6 1.0856 -4.7990 -0.1136 12 7 -0.0184 -4.7946 0.6116 13 6 -0.5093 -3.6856 1.1445 14 7 -1.6828 -3.7438 1.8958 15 6 -2.2540 -4.9349 2.1624 16 8 -1.8002 -5.9479 1.6739 17 6 -3.4568 -5.0083 3.0675 18 8 -3.8758 -6.3685 3.1936 19 6 -5.0156 -6.5498 4.0362 20 6 -5.3675 -8.0139 4.0972 21 6 -4.6093 -8.9287 3.3909 22 6 -4.9381 -10.2738 3.4579 23 6 -6.0283 -10.6490 4.2285 24 6 -6.7393 -9.6778 4.9073 25 7 -6.3951 -8.4075 4.8237 26 6 0.1317 -2.4693 0.9697 27 1 -0.4851 0.8401 -0.0004 28 1 2.6949 -3.6557 -0.9323 29 1 1.4433 -5.7289 -0.5304 30 1 -2.0879 -2.9267 2.2266 31 1 -4.2677 -4.4164 2.6427 32 1 -3.1963 -4.6153 4.0502 33 1 -5.8589 -5.9897 3.6322 34 1 -4.7871 -6.1894 5.0392 35 1 -3.7692 -8.6002 2.7970 36 1 -4.3614 -11.0114 2.9197 37 1 -6.3153 -11.6877 4.3007 38 1 -7.5871 -9.9623 5.5128 39 1 -0.2693 -1.5682 1.4099 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807082076.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:51:43 Heat of formation + Delta-G solvation = 0.172273 kcal Electronic energy + Delta-G solvation = -23865.845251 eV Core-core repulsion = 20160.015615 eV Total energy + Delta-G solvation = -3705.829636 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.40372 -39.66820 -38.22279 -37.18953 -34.33168 -33.74874 -32.83233 -32.09070 -30.58944 -29.41849 -27.76260 -26.24278 -25.97778 -23.63724 -22.19467 -22.05034 -21.64743 -19.79089 -17.76228 -17.58436 -17.02408 -16.65266 -16.46422 -15.95249 -15.49371 -15.31533 -15.12570 -14.76570 -14.41482 -14.23259 -13.88165 -13.79354 -13.42546 -13.16578 -12.77964 -12.71831 -12.59068 -12.01806 -11.96092 -11.73564 -11.44212 -11.23443 -10.94038 -10.31892 -10.19898 -10.15261 -9.91881 -9.76455 -9.66988 -9.40957 -9.37009 -9.09748 -7.99427 -7.76621 -7.08229 -6.78839 -4.65371 0.89720 1.10244 2.50261 2.78145 2.82868 2.99558 3.02574 3.16258 3.40261 3.57773 3.80559 3.83999 4.43943 4.58629 4.65995 4.68132 4.87390 4.90457 5.08746 5.12119 5.12357 5.13678 5.27734 5.42442 5.63445 5.67461 5.89761 5.95471 6.07434 6.50753 6.53585 6.57932 6.75693 6.86173 6.93993 7.08548 7.33801 7.42248 7.73401 7.74327 7.90392 8.16518 8.39011 8.66611 8.72527 8.83206 9.63713 10.08305 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.033058 B = 0.002255 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.796721 B =12416.033490 C =13181.471920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.076 3.924 3 Si 0.915 3.085 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.457 4.457 8 H 0.081 0.919 9 C 0.143 3.857 10 C -0.280 4.280 11 C 0.117 3.883 12 N -0.552 5.552 13 C 0.336 3.664 14 N -0.657 5.657 15 C 0.497 3.503 16 O -0.460 6.460 17 C 0.048 3.952 18 O -0.360 6.360 19 C 0.113 3.887 20 C 0.124 3.876 21 C -0.142 4.142 22 C -0.077 4.077 23 C -0.177 4.177 24 C 0.097 3.903 25 N -0.485 5.485 26 C -0.235 4.235 27 H 0.282 0.718 28 H 0.103 0.897 29 H 0.125 0.875 30 H 0.409 0.591 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.152 0.848 36 H 0.136 0.864 37 H 0.134 0.866 38 H 0.156 0.844 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.648 -9.225 8.827 17.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.142 4.142 3 Si 0.739 3.261 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.488 4.488 8 H 0.099 0.901 9 C 0.135 3.865 10 C -0.303 4.303 11 C -0.037 4.037 12 N -0.271 5.271 13 C 0.112 3.888 14 N -0.305 5.305 15 C 0.280 3.720 16 O -0.328 6.328 17 C -0.033 4.033 18 O -0.277 6.277 19 C 0.035 3.965 20 C -0.013 4.013 21 C -0.162 4.162 22 C -0.103 4.103 23 C -0.197 4.197 24 C -0.061 4.061 25 N -0.195 5.195 26 C -0.261 4.261 27 H 0.093 0.907 28 H 0.121 0.879 29 H 0.142 0.858 30 H 0.244 0.756 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.170 0.830 36 H 0.154 0.846 37 H 0.152 0.848 38 H 0.173 0.827 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -12.404 -10.194 9.006 18.408 hybrid contribution 0.861 1.606 -0.376 1.861 sum -11.542 -8.588 8.629 16.776 Atomic orbital electron populations 1.69730 1.07547 1.29344 1.35677 1.25935 0.94888 1.01394 0.92001 0.86255 0.79980 0.79799 0.80038 1.18922 1.20279 1.18788 1.19530 0.95826 0.89971 1.43491 0.90068 1.17586 0.90218 0.92284 0.86432 1.21955 1.04490 0.94598 1.09304 1.21777 0.90722 0.96564 0.94622 1.67212 1.15583 1.28170 1.16184 1.18155 0.86619 0.90987 0.93062 1.43283 1.25149 1.08751 1.53267 1.20153 0.84749 0.84355 0.82723 1.90802 1.60841 1.33641 1.47562 1.22253 0.96566 0.84519 0.99923 1.87915 1.46649 1.24676 1.68496 1.20930 0.88944 0.91462 0.95120 1.20777 0.91550 0.95518 0.93452 1.22143 1.01267 0.93114 0.99637 1.21694 0.95807 0.96372 0.96424 1.22158 0.97202 1.01167 0.99179 1.22627 0.98697 0.87629 0.97105 1.67191 1.15167 1.19227 1.17952 1.21592 1.01406 0.95379 1.07711 0.90740 0.87879 0.85800 0.75641 0.90171 0.90117 0.90716 0.90724 0.83009 0.84627 0.84840 0.82651 0.85224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.32 10.83 55.55 0.60 -18.72 16 2 C 0.08 1.80 5.30 -17.35 -0.09 1.71 16 3 Si 0.91 17.74 29.57 -169.99 -5.03 12.71 16 4 H -0.26 -5.12 7.11 56.52 0.40 -4.71 16 5 H -0.28 -5.24 7.11 56.52 0.40 -4.84 16 6 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 7 C -0.46 -11.58 9.13 -37.65 -0.34 -11.92 16 8 H 0.08 1.97 7.87 -52.49 -0.41 1.55 16 9 C 0.14 3.72 5.58 -106.55 -0.59 3.12 16 10 C -0.28 -6.80 9.90 -38.70 -0.38 -7.18 16 11 C 0.12 2.81 11.15 -17.68 -0.20 2.61 16 12 N -0.55 -14.03 7.85 -12.52 -0.10 -14.13 16 13 C 0.34 8.02 7.42 -154.71 -1.15 6.87 16 14 N -0.66 -12.37 5.39 -11.49 -0.06 -12.43 16 15 C 0.50 9.17 7.87 -10.99 -0.09 9.08 16 16 O -0.46 -10.70 14.76 -14.35 -0.21 -10.91 16 17 C 0.05 0.60 6.42 36.01 0.23 0.83 16 18 O -0.36 -5.03 8.33 -55.14 -0.46 -5.49 16 19 C 0.11 1.25 6.48 36.01 0.23 1.48 16 20 C 0.12 1.53 6.78 -82.58 -0.56 0.97 16 21 C -0.14 -1.74 9.41 -39.44 -0.37 -2.11 16 22 C -0.08 -0.76 10.18 -39.27 -0.40 -1.16 16 23 C -0.18 -1.50 10.11 -39.44 -0.40 -1.90 16 24 C 0.10 0.91 11.18 -17.55 -0.20 0.71 16 25 N -0.48 -5.75 10.27 -9.47 -0.10 -5.85 16 26 C -0.24 -5.85 8.59 -38.48 -0.33 -6.18 16 27 H 0.28 6.20 8.29 -40.82 -0.34 5.86 16 28 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16 29 H 0.12 2.59 8.06 -52.49 -0.42 2.16 16 30 H 0.41 6.07 8.70 -40.82 -0.36 5.71 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.15 2.08 7.00 -52.48 -0.37 1.71 16 36 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 37 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 38 H 0.16 0.97 8.06 -52.49 -0.42 0.55 16 39 H 0.13 3.18 6.27 -52.48 -0.33 2.85 16 LS Contribution 344.79 15.07 5.20 5.20 Total: -1.00 -33.17 344.79 -9.20 -42.37 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -4.40 Total: 10.31 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: -4.64 Total: -3.07 kcal Atomic # 7 Polarization: -51.47 SS G_CDS: 0.34 Total: -51.12 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -0.67 Total: -16.40 kcal Atomic # 14 Polarization: 17.74 SS G_CDS: -5.03 Total: 12.71 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.17 -9.20 -42.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807082076.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.543 kcal (2) G-P(sol) polarization free energy of solvation -33.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds