Wall clock time and date at job start Fri Apr 10 2020 22:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99915 * 2 1 4 4 H 1.48497 * 109.47172 * 270.00049 * 3 2 1 5 5 H 1.48503 * 109.47082 * 29.99855 * 3 2 1 6 6 H 1.48502 * 109.47079 * 149.99778 * 3 2 1 7 7 C 1.37876 * 120.00293 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00018 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00123 * 180.02562 * 7 2 1 10 10 N 1.46505 * 109.47382 * 180.02562 * 9 7 2 11 11 C 1.46499 * 120.00173 * 97.19467 * 10 9 7 12 12 C 1.50703 * 109.47210 * 270.00369 * 11 10 9 13 13 C 1.38233 * 119.61542 * 94.97737 * 12 11 10 14 14 C 1.38635 * 119.15688 * 179.79361 * 13 12 11 15 15 C 1.38677 * 118.41847 * 0.46663 * 14 13 12 16 16 C 1.38172 * 119.16497 * 359.51633 * 15 14 13 17 17 N 1.31856 * 119.62010 * 274.99983 * 12 11 10 18 18 C 1.34778 * 120.00049 * 277.20120 * 10 9 7 19 19 O 1.21673 * 120.00386 * 179.32529 * 18 10 9 20 20 C 1.46848 * 119.99707 * 359.32248 * 18 10 9 21 21 C 1.36238 * 125.80019 * 189.69612 * 20 18 10 22 22 C 1.41567 * 106.98266 * 179.85368 * 21 20 18 23 23 C 1.46621 * 126.51513 * 180.12585 * 22 21 20 24 24 O 1.21322 * 120.00225 * 0.31041 * 23 22 21 25 25 C 1.38614 * 106.96713 * 0.40909 * 22 21 20 26 26 N 1.34110 * 108.34937 * 359.74902 * 25 22 21 27 27 H 0.97000 * 125.35258 * 179.97438 * 26 25 22 28 28 H 0.97000 * 120.00161 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.47240 * 60.00079 * 9 7 2 30 30 H 1.08998 * 109.47562 * 299.99917 * 9 7 2 31 31 H 1.09001 * 109.47268 * 150.00271 * 11 10 9 32 32 H 1.08999 * 109.46990 * 29.99860 * 11 10 9 33 33 H 1.07991 * 120.42238 * 359.97438 * 13 12 11 34 34 H 1.07999 * 120.78880 * 180.23582 * 14 13 12 35 35 H 1.07999 * 120.41136 * 179.78239 * 15 14 13 36 36 H 1.08001 * 119.61942 * 180.25464 * 16 15 14 37 37 H 1.08001 * 126.50644 * 359.97438 * 21 20 18 38 38 H 1.08001 * 120.00148 * 180.31874 * 23 22 21 39 39 H 1.07997 * 125.82400 * 179.76813 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 7 4.0000 -2.5752 0.0010 11 6 4.3945 -3.2125 -1.2577 12 6 3.2008 -3.9010 -1.8679 13 6 2.4441 -3.2417 -2.8184 14 6 1.3506 -3.8855 -3.3767 15 6 1.0521 -5.1705 -2.9490 16 6 1.8546 -5.7660 -1.9949 17 7 2.8901 -5.1250 -1.4887 18 6 4.0863 -3.2596 1.1589 19 8 4.4803 -4.4107 1.1573 20 6 3.7048 -2.6158 2.4224 21 6 3.9164 -3.1209 3.6699 22 6 3.3983 -2.1788 4.5908 23 6 3.4045 -2.2933 6.0525 24 8 3.8937 -3.2688 6.5826 25 6 2.8784 -1.1305 3.8477 26 7 3.0663 -1.4006 2.5476 27 1 2.7952 -0.8306 1.8111 28 1 -0.4850 0.8400 0.0004 29 1 3.8745 -0.6799 0.8912 30 1 3.8753 -0.6804 -0.8888 31 1 5.1772 -3.9460 -1.0639 32 1 4.7687 -2.4553 -1.9467 33 1 2.7031 -2.2389 -3.1244 34 1 0.7434 -3.3966 -4.1242 35 1 0.2055 -5.7006 -3.3598 36 1 1.6313 -6.7681 -1.6595 37 1 4.3912 -4.0606 3.9105 38 1 2.9733 -1.5093 6.6574 39 1 2.4033 -0.2469 4.2476 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815399948.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:52:13 Heat of formation + Delta-G solvation = 37.350914 kcal Electronic energy + Delta-G solvation = -25938.720539 eV Core-core repulsion = 22234.503090 eV Total energy + Delta-G solvation = -3704.217449 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -41.14497 -39.82629 -38.54847 -37.88507 -35.59384 -33.23692 -32.10325 -31.66322 -30.66849 -29.28107 -28.57188 -26.36324 -23.85916 -23.22494 -22.95667 -22.08989 -20.97210 -19.58218 -19.12076 -17.50996 -17.06256 -16.49155 -16.18044 -15.78439 -15.55671 -15.30487 -14.97774 -14.56972 -14.33013 -14.11690 -13.77862 -13.40998 -13.20761 -13.09900 -13.02876 -12.83712 -12.60075 -12.47740 -11.99402 -11.86852 -11.69368 -11.43142 -11.28325 -10.90806 -10.66638 -10.05145 -9.55454 -9.43897 -9.34588 -9.19397 -9.02291 -8.61053 -8.58575 -8.08400 -7.79230 -6.64999 -4.72410 1.46486 1.72338 1.79115 2.15094 2.80962 2.88923 2.95156 3.50230 3.62775 3.81107 3.83537 4.05168 4.34354 4.61281 4.68411 4.77921 5.07872 5.18260 5.26233 5.36701 5.43487 5.50809 5.53680 5.71232 5.85068 5.91667 5.94839 6.05460 6.12366 6.15952 6.36016 6.44572 6.51093 6.55889 6.90301 6.96450 7.06476 7.09443 7.29640 7.79926 7.88325 8.00536 8.06000 8.46769 8.49254 8.77367 8.88655 10.45274 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.010785 B = 0.006015 C = 0.004408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2595.581413 B = 4654.180013 C = 6351.249638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.079 3.921 3 Si 0.852 3.148 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.262 1.262 7 C -0.559 4.559 8 H 0.087 0.913 9 C 0.190 3.810 10 N -0.591 5.591 11 C 0.173 3.827 12 C 0.118 3.882 13 C -0.134 4.134 14 C -0.079 4.079 15 C -0.177 4.177 16 C 0.090 3.910 17 N -0.459 5.459 18 C 0.592 3.408 19 O -0.530 6.530 20 C -0.046 4.046 21 C -0.067 4.067 22 C -0.306 4.306 23 C 0.413 3.587 24 O -0.488 6.488 25 C 0.074 3.926 26 N -0.497 5.497 27 H 0.443 0.557 28 H 0.273 0.727 29 H 0.031 0.969 30 H 0.043 0.957 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.132 0.868 34 H 0.128 0.872 35 H 0.127 0.873 36 H 0.148 0.852 37 H 0.148 0.852 38 H 0.093 0.907 39 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.331 1.290 -2.753 4.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.129 4.129 3 Si 0.676 3.324 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.186 1.186 7 C -0.597 4.597 8 H 0.105 0.895 9 C 0.067 3.933 10 N -0.323 5.323 11 C 0.049 3.951 12 C -0.021 4.021 13 C -0.155 4.155 14 C -0.105 4.105 15 C -0.197 4.197 16 C -0.068 4.068 17 N -0.168 5.168 18 C 0.381 3.619 19 O -0.407 6.407 20 C -0.158 4.158 21 C -0.092 4.092 22 C -0.314 4.314 23 C 0.274 3.726 24 O -0.363 6.363 25 C -0.073 4.073 26 N -0.104 5.104 27 H 0.302 0.698 28 H 0.084 0.916 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.114 0.886 32 H 0.107 0.893 33 H 0.150 0.850 34 H 0.146 0.854 35 H 0.145 0.855 36 H 0.166 0.834 37 H 0.165 0.835 38 H 0.109 0.891 39 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 4.116 -0.028 -2.108 4.625 hybrid contribution -0.956 1.957 -1.201 2.488 sum 3.160 1.929 -3.309 4.966 Atomic orbital electron populations 1.69870 1.06073 1.27852 1.45959 1.25010 0.94957 0.98700 0.94193 0.87225 0.80466 0.84314 0.80360 1.18736 1.19878 1.18603 1.21507 0.88800 0.95692 1.53734 0.89476 1.20194 0.96004 0.79130 0.97941 1.47700 1.64598 1.14699 1.05258 1.20157 0.93244 0.96548 0.85174 1.21546 0.97145 0.90525 0.92871 1.21901 0.95791 1.00337 0.97449 1.21478 0.96025 0.94385 0.98599 1.22051 1.01129 0.96585 0.99966 1.22660 0.91060 0.99611 0.93435 1.67548 1.16670 1.08973 1.23580 1.17074 0.77590 0.85156 0.82109 1.90798 1.47618 1.15920 1.86341 1.20076 1.10276 0.90324 0.95132 1.21062 0.99698 0.98939 0.89509 1.20640 1.15592 0.99087 0.96041 1.22984 0.74536 0.87256 0.87784 1.90491 1.37396 1.32857 1.75574 1.22652 1.00495 0.99850 0.84287 1.44133 1.40000 1.17174 1.09140 0.69787 0.91602 0.95221 0.93940 0.88648 0.89308 0.84990 0.85362 0.85507 0.83445 0.83461 0.89079 0.80687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -21.96 13.96 55.43 0.77 -21.19 16 2 C 0.08 1.83 5.17 -17.82 -0.09 1.74 16 3 Si 0.85 16.54 27.03 -169.99 -4.59 11.95 16 4 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 5 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 6 H -0.26 -4.72 6.54 56.52 0.37 -4.35 16 7 C -0.56 -12.85 7.83 -34.44 -0.27 -13.12 16 8 H 0.09 2.42 8.06 -52.49 -0.42 1.99 16 9 C 0.19 3.76 3.85 -5.19 -0.02 3.74 16 10 N -0.59 -11.76 2.46 -177.92 -0.44 -12.20 16 11 C 0.17 3.01 5.75 -5.19 -0.03 2.98 16 12 C 0.12 2.18 6.36 -82.58 -0.53 1.66 16 13 C -0.13 -2.25 9.72 -39.44 -0.38 -2.64 16 14 C -0.08 -1.20 10.18 -39.27 -0.40 -1.60 16 15 C -0.18 -2.61 10.11 -39.44 -0.40 -3.01 16 16 C 0.09 1.49 11.18 -17.55 -0.20 1.29 16 17 N -0.46 -8.95 10.27 -9.47 -0.10 -9.05 16 18 C 0.59 12.88 7.58 -12.78 -0.10 12.78 16 19 O -0.53 -12.55 16.46 5.21 0.09 -12.46 16 20 C -0.05 -0.94 6.56 -82.40 -0.54 -1.48 16 21 C -0.07 -1.32 10.38 -39.03 -0.41 -1.72 16 22 C -0.31 -5.12 6.13 -105.11 -0.64 -5.77 16 23 C 0.41 6.06 11.68 34.11 0.40 6.46 16 24 O -0.49 -8.99 17.74 5.52 0.10 -8.90 16 25 C 0.07 1.18 11.93 -16.42 -0.20 0.98 16 26 N -0.50 -9.48 4.68 -9.24 -0.04 -9.52 16 27 H 0.44 8.80 2.75 -40.82 -0.11 8.69 16 28 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 29 H 0.03 0.59 4.30 -51.93 -0.22 0.37 16 30 H 0.04 0.78 7.24 -51.93 -0.38 0.40 16 31 H 0.10 1.68 7.43 -51.93 -0.39 1.29 16 32 H 0.09 1.25 7.75 -51.93 -0.40 0.84 16 33 H 0.13 2.03 8.06 -52.49 -0.42 1.61 16 34 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 35 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 36 H 0.15 2.04 8.06 -52.49 -0.42 1.62 16 37 H 0.15 2.90 8.06 -52.49 -0.42 2.48 16 38 H 0.09 0.91 8.06 -52.49 -0.42 0.49 16 39 H 0.18 1.98 8.06 -52.49 -0.42 1.56 16 LS Contribution 340.02 15.07 5.12 5.12 Total: -1.00 -31.26 340.02 -6.94 -38.20 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -4.05 Total: 15.76 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: -3.80 Total: 2.28 kcal Atomic # 7 Polarization: -52.16 SS G_CDS: 0.19 Total: -51.96 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: 0.18 Total: -21.36 kcal Atomic # 14 Polarization: 16.54 SS G_CDS: -4.59 Total: 11.95 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.26 -6.94 -38.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815399948.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.553 kcal (2) G-P(sol) polarization free energy of solvation -31.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds