Wall clock time and date at job start Fri Apr 10 2020 22:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99915 * 2 1 4 4 H 1.48497 * 109.47172 * 270.00049 * 3 2 1 5 5 H 1.48503 * 109.47082 * 29.99855 * 3 2 1 6 6 H 1.48502 * 109.47079 * 149.99778 * 3 2 1 7 7 C 1.37876 * 120.00293 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00018 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00123 * 180.02562 * 7 2 1 10 10 N 1.46505 * 109.47382 * 180.02562 * 9 7 2 11 11 C 1.46499 * 120.00173 * 97.19467 * 10 9 7 12 12 C 1.50703 * 109.47210 * 270.00369 * 11 10 9 13 13 C 1.38233 * 119.61542 * 94.97737 * 12 11 10 14 14 C 1.38635 * 119.15688 * 179.79361 * 13 12 11 15 15 C 1.38677 * 118.41847 * 0.46663 * 14 13 12 16 16 C 1.38172 * 119.16497 * 359.51633 * 15 14 13 17 17 N 1.31856 * 119.62010 * 274.99983 * 12 11 10 18 18 C 1.34778 * 120.00049 * 277.20120 * 10 9 7 19 19 O 1.21673 * 120.00386 * 179.32529 * 18 10 9 20 20 C 1.46848 * 119.99707 * 359.32248 * 18 10 9 21 21 C 1.36238 * 125.80019 * 189.69612 * 20 18 10 22 22 C 1.41567 * 106.98266 * 179.85368 * 21 20 18 23 23 C 1.46621 * 126.51513 * 180.12585 * 22 21 20 24 24 O 1.21322 * 120.00225 * 0.31041 * 23 22 21 25 25 C 1.38614 * 106.96713 * 0.40909 * 22 21 20 26 26 N 1.34110 * 108.34937 * 359.74902 * 25 22 21 27 27 H 0.97000 * 125.35258 * 179.97438 * 26 25 22 28 28 H 0.97000 * 120.00161 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.47240 * 60.00079 * 9 7 2 30 30 H 1.08998 * 109.47562 * 299.99917 * 9 7 2 31 31 H 1.09001 * 109.47268 * 150.00271 * 11 10 9 32 32 H 1.08999 * 109.46990 * 29.99860 * 11 10 9 33 33 H 1.07991 * 120.42238 * 359.97438 * 13 12 11 34 34 H 1.07999 * 120.78880 * 180.23582 * 14 13 12 35 35 H 1.07999 * 120.41136 * 179.78239 * 15 14 13 36 36 H 1.08001 * 119.61942 * 180.25464 * 16 15 14 37 37 H 1.08001 * 126.50644 * 359.97438 * 21 20 18 38 38 H 1.08001 * 120.00148 * 180.31874 * 23 22 21 39 39 H 1.07997 * 125.82400 * 179.76813 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 7 4.0000 -2.5752 0.0010 11 6 4.3945 -3.2125 -1.2577 12 6 3.2008 -3.9010 -1.8679 13 6 2.4441 -3.2417 -2.8184 14 6 1.3506 -3.8855 -3.3767 15 6 1.0521 -5.1705 -2.9490 16 6 1.8546 -5.7660 -1.9949 17 7 2.8901 -5.1250 -1.4887 18 6 4.0863 -3.2596 1.1589 19 8 4.4803 -4.4107 1.1573 20 6 3.7048 -2.6158 2.4224 21 6 3.9164 -3.1209 3.6699 22 6 3.3983 -2.1788 4.5908 23 6 3.4045 -2.2933 6.0525 24 8 3.8937 -3.2688 6.5826 25 6 2.8784 -1.1305 3.8477 26 7 3.0663 -1.4006 2.5476 27 1 2.7952 -0.8306 1.8111 28 1 -0.4850 0.8400 0.0004 29 1 3.8745 -0.6799 0.8912 30 1 3.8753 -0.6804 -0.8888 31 1 5.1772 -3.9460 -1.0639 32 1 4.7687 -2.4553 -1.9467 33 1 2.7031 -2.2389 -3.1244 34 1 0.7434 -3.3966 -4.1242 35 1 0.2055 -5.7006 -3.3598 36 1 1.6313 -6.7681 -1.6595 37 1 4.3912 -4.0606 3.9105 38 1 2.9733 -1.5093 6.6574 39 1 2.4033 -0.2469 4.2476 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815399948.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:52:12 Heat of formation + Delta-G solvation = 16.987649 kcal Electronic energy + Delta-G solvation = -25939.603556 eV Core-core repulsion = 22234.503090 eV Total energy + Delta-G solvation = -3705.100467 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.59780 -41.14950 -40.02811 -39.24276 -37.22351 -34.90868 -33.45349 -33.04214 -32.09011 -30.71379 -30.19628 -27.78119 -25.22493 -24.75112 -24.32474 -23.46883 -22.37094 -21.08506 -20.45114 -19.25158 -18.57213 -17.82940 -17.58947 -17.19604 -16.96480 -16.65176 -16.39715 -15.97747 -15.82247 -15.48730 -15.19185 -14.86383 -14.72364 -14.53914 -14.45201 -14.17260 -14.09416 -13.88657 -13.49795 -13.35785 -13.07193 -12.83195 -12.67882 -12.39121 -12.15324 -11.82774 -11.16675 -10.93521 -10.73340 -10.64055 -10.37494 -10.06428 -9.92322 -9.63368 -9.21986 -8.41757 -6.55033 0.17822 0.44912 0.56812 0.61353 1.32812 1.38086 1.44409 2.02345 2.19974 2.23824 2.44504 2.55141 2.88869 3.01431 3.41701 3.55746 3.80698 3.91257 4.02721 4.14043 4.21345 4.22875 4.29050 4.36192 4.44299 4.51305 4.56753 4.65737 4.78210 4.88695 4.90215 5.15696 5.18359 5.24563 5.30977 5.46663 5.63454 5.83683 5.85313 6.05333 6.40520 6.51810 6.60120 6.80045 7.05237 7.16544 7.19783 8.72468 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.010785 B = 0.006015 C = 0.004408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2595.581413 B = 4654.180013 C = 6351.249638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.038 3.962 3 Si 0.915 3.085 4 H -0.258 1.258 5 H -0.273 1.273 6 H -0.235 1.235 7 C -0.546 4.546 8 H 0.028 0.972 9 C 0.193 3.807 10 N -0.589 5.589 11 C 0.166 3.834 12 C 0.096 3.904 13 C -0.145 4.145 14 C -0.086 4.086 15 C -0.170 4.170 16 C 0.070 3.930 17 N -0.500 5.500 18 C 0.581 3.419 19 O -0.565 6.565 20 C -0.077 4.077 21 C -0.084 4.084 22 C -0.315 4.315 23 C 0.424 3.576 24 O -0.530 6.530 25 C 0.099 3.901 26 N -0.511 5.511 27 H 0.441 0.559 28 H 0.275 0.725 29 H 0.042 0.958 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.124 0.876 33 H 0.144 0.856 34 H 0.157 0.843 35 H 0.163 0.837 36 H 0.166 0.834 37 H 0.131 0.869 38 H 0.161 0.839 39 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.124 4.136 -2.543 5.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.165 4.165 3 Si 0.736 3.264 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.158 1.158 7 C -0.585 4.585 8 H 0.046 0.954 9 C 0.071 3.929 10 N -0.319 5.319 11 C 0.043 3.957 12 C -0.043 4.043 13 C -0.165 4.165 14 C -0.112 4.112 15 C -0.189 4.189 16 C -0.087 4.087 17 N -0.210 5.210 18 C 0.371 3.629 19 O -0.445 6.445 20 C -0.189 4.189 21 C -0.109 4.109 22 C -0.322 4.322 23 C 0.288 3.712 24 O -0.408 6.408 25 C -0.047 4.047 26 N -0.117 5.117 27 H 0.298 0.702 28 H 0.085 0.915 29 H 0.059 0.941 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.142 0.858 33 H 0.162 0.838 34 H 0.175 0.825 35 H 0.181 0.819 36 H 0.183 0.817 37 H 0.149 0.851 38 H 0.177 0.823 39 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 3.928 2.820 -1.911 5.199 hybrid contribution -0.988 0.979 -1.257 1.875 sum 2.940 3.799 -3.168 5.754 Atomic orbital electron populations 1.70017 1.08186 1.28977 1.47849 1.25702 0.95401 1.02135 0.93267 0.86216 0.80139 0.79226 0.80868 1.18228 1.19795 1.15769 1.21249 0.90078 0.93440 1.53704 0.95372 1.20187 0.93909 0.79401 0.99410 1.47759 1.63788 1.14732 1.05586 1.20409 0.93011 0.97333 0.84901 1.21680 0.97979 0.90714 0.93907 1.22108 0.96215 1.00896 0.97282 1.21918 0.95709 0.94695 0.98836 1.22432 1.01329 0.96484 0.98693 1.23119 0.90949 1.00574 0.94071 1.67502 1.18413 1.10079 1.25027 1.17432 0.77313 0.85005 0.83170 1.90754 1.49471 1.17313 1.86981 1.20017 1.12318 0.91703 0.94851 1.21190 1.00083 0.99177 0.90475 1.21061 1.15209 0.98479 0.97436 1.23789 0.73008 0.87642 0.86801 1.90497 1.39415 1.35067 1.75849 1.23522 0.97945 1.00594 0.82642 1.44078 1.40653 1.16640 1.10372 0.70207 0.91498 0.94099 0.91431 0.89690 0.85768 0.83823 0.82537 0.81915 0.81663 0.85072 0.82323 0.75369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.62 13.96 21.45 0.30 -46.32 16 2 C 0.04 1.74 5.17 84.65 0.44 2.18 16 3 Si 0.91 31.96 27.03 68.60 1.85 33.81 16 4 H -0.26 -8.85 7.11 99.48 0.71 -8.14 16 5 H -0.27 -9.52 7.11 99.48 0.71 -8.81 16 6 H -0.23 -7.15 6.54 99.48 0.65 -6.50 16 7 C -0.55 -25.17 7.83 25.60 0.20 -24.97 16 8 H 0.03 1.62 8.06 -2.91 -0.02 1.60 16 9 C 0.19 7.45 3.85 85.63 0.33 7.78 16 10 N -0.59 -23.82 2.46 -835.03 -2.06 -25.88 16 11 C 0.17 5.93 5.75 85.63 0.49 6.43 16 12 C 0.10 3.63 6.36 42.55 0.27 3.90 16 13 C -0.14 -4.84 9.72 22.36 0.22 -4.62 16 14 C -0.09 -2.54 10.18 22.47 0.23 -2.31 16 15 C -0.17 -4.84 10.11 22.36 0.23 -4.62 16 16 C 0.07 2.36 11.18 84.67 0.95 3.31 16 17 N -0.50 -20.41 10.27 -183.88 -1.89 -22.30 16 18 C 0.58 26.39 7.58 86.50 0.66 27.04 16 19 O -0.57 -28.51 16.46 -4.26 -0.07 -28.58 16 20 C -0.08 -3.25 6.56 39.99 0.26 -2.99 16 21 C -0.08 -3.35 10.38 22.62 0.23 -3.12 16 22 C -0.31 -9.97 6.13 -20.18 -0.12 -10.09 16 23 C 0.42 11.16 11.68 70.01 0.82 11.98 16 24 O -0.53 -18.95 17.74 -3.16 -0.06 -19.01 16 25 C 0.10 2.82 11.93 84.43 1.01 3.83 16 26 N -0.51 -18.84 4.68 -183.15 -0.86 -19.70 16 27 H 0.44 16.81 2.75 -92.71 -0.25 16.56 16 28 H 0.28 13.06 8.31 -92.71 -0.77 12.29 16 29 H 0.04 1.53 4.30 -2.38 -0.01 1.52 16 30 H 0.07 2.28 7.24 -2.39 -0.02 2.26 16 31 H 0.08 3.16 7.43 -2.39 -0.02 3.14 16 32 H 0.12 3.38 7.75 -2.39 -0.02 3.36 16 33 H 0.14 4.30 8.06 -2.92 -0.02 4.28 16 34 H 0.16 3.64 8.06 -2.91 -0.02 3.62 16 35 H 0.16 3.36 8.06 -2.91 -0.02 3.34 16 36 H 0.17 4.68 8.06 -2.91 -0.02 4.65 16 37 H 0.13 5.54 8.06 -2.91 -0.02 5.52 16 38 H 0.16 2.19 8.06 -2.91 -0.02 2.17 16 39 H 0.23 3.82 8.06 -2.91 -0.02 3.80 16 Total: -1.00 -73.82 340.02 4.22 -69.60 By element: Atomic # 1 Polarization: 43.86 SS G_CDS: 0.79 Total: 44.65 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: 6.20 Total: 13.72 kcal Atomic # 7 Polarization: -109.69 SS G_CDS: -4.50 Total: -114.19 kcal Atomic # 8 Polarization: -47.46 SS G_CDS: -0.13 Total: -47.59 kcal Atomic # 14 Polarization: 31.96 SS G_CDS: 1.85 Total: 33.81 kcal Total: -73.82 4.22 -69.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815399948.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.591 kcal (2) G-P(sol) polarization free energy of solvation -73.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds