Wall clock time and date at job start Fri Apr 10 2020 22:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86800 * 120.00542 * 2 1 4 4 H 1.48503 * 109.46862 * 270.00448 * 3 2 1 5 5 H 1.48498 * 109.46756 * 29.99784 * 3 2 1 6 6 H 1.48491 * 109.47343 * 150.00309 * 3 2 1 7 7 C 1.38656 * 120.00071 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99387 * 359.97438 * 7 2 1 9 9 O 1.34826 * 120.00735 * 180.02562 * 7 2 1 10 10 C 1.35751 * 117.00407 * 185.40151 * 9 7 2 11 11 C 1.38959 * 120.03099 * 185.92328 * 10 9 7 12 12 C 1.38128 * 120.07103 * 179.97438 * 11 10 9 13 13 C 1.38196 * 120.14155 * 359.72259 * 12 11 10 14 14 C 1.38935 * 120.06578 * 0.55321 * 13 12 11 15 15 N 1.39830 * 120.04069 * 179.72297 * 14 13 12 16 16 C 1.34777 * 119.99886 * 326.12936 * 15 14 13 17 17 O 1.21688 * 119.99792 * 354.77905 * 16 15 14 18 18 C 1.46734 * 120.00181 * 174.78032 * 16 15 14 19 19 C 1.36570 * 126.84212 * 180.02562 * 18 16 15 20 20 N 1.33169 * 107.79222 * 179.97438 * 19 18 16 21 21 C 1.31368 * 109.77742 * 359.91184 * 20 19 18 22 22 N 1.34283 * 108.97424 * 0.18752 * 21 20 19 23 23 C 1.46993 * 111.32695 * 179.71472 * 22 21 20 24 24 C 1.54403 * 105.48746 * 17.09718 * 23 22 21 25 25 C 1.51645 * 141.07119 * 180.18565 * 21 20 19 26 26 C 1.38718 * 120.03034 * 5.89492 * 10 9 7 27 27 H 0.97004 * 119.99577 * 359.97438 * 1 2 3 28 28 H 1.08002 * 119.96024 * 359.95511 * 11 10 9 29 29 H 1.08003 * 119.92402 * 180.02562 * 12 11 10 30 30 H 1.08003 * 119.96551 * 180.27476 * 13 12 11 31 31 H 0.97002 * 120.00597 * 146.13053 * 15 14 13 32 32 H 1.07998 * 126.10563 * 359.90773 * 19 18 16 33 33 H 1.08997 * 110.24266 * 136.09078 * 23 22 21 34 34 H 1.08996 * 110.24517 * 257.99401 * 23 22 21 35 35 H 1.08999 * 110.98043 * 216.25027 * 24 23 22 36 36 H 1.08992 * 110.99001 * 92.44524 * 24 23 22 37 37 H 1.09001 * 110.47381 * 282.15776 * 25 21 20 38 38 H 1.09005 * 110.47624 * 44.78235 * 25 21 20 39 39 H 1.07997 * 120.07423 * 0.04966 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 2.4971 2.0463 -1.4001 5 1 1.4472 2.6526 0.7000 6 1 3.5472 1.4400 0.6999 7 6 2.0088 -1.2008 -0.0005 8 1 1.4687 -2.1361 -0.0005 9 8 3.3571 -1.2009 0.0000 10 6 3.9734 -2.4051 -0.1144 11 6 5.3553 -2.4930 0.0025 12 6 5.9831 -3.7178 -0.1133 13 6 5.2393 -4.8603 -0.3399 14 6 3.8579 -4.7783 -0.4635 15 7 3.1063 -5.9338 -0.6985 16 6 3.6187 -6.9301 -1.4477 17 8 4.6946 -6.7862 -1.9978 18 6 2.8792 -8.1883 -1.6001 19 6 3.2646 -9.2825 -2.3208 20 7 2.3132 -10.2062 -2.1983 21 6 1.3467 -9.7501 -1.4343 22 7 1.6517 -8.5026 -1.0423 23 6 0.5978 -7.9381 -0.1871 24 6 -0.2416 -9.1454 0.2839 25 6 0.0088 -10.1630 -0.8518 26 6 3.2242 -3.5490 -0.3476 27 1 -0.4850 0.8401 0.0004 28 1 5.9389 -1.6025 0.1837 29 1 7.0573 -3.7834 -0.0216 30 1 5.7328 -5.8171 -0.4255 31 1 2.2162 -6.0184 -0.3224 32 1 4.1775 -9.3808 -2.8894 33 1 1.0395 -7.4289 0.6694 34 1 -0.0212 -7.2464 -0.7583 35 1 -1.2980 -8.8848 0.3487 36 1 0.1239 -9.5269 1.2372 37 1 -0.7740 -10.0919 -1.6070 38 1 0.0633 -11.1755 -0.4517 39 1 2.1501 -3.4832 -0.4391 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822400463.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:52:21 Heat of formation + Delta-G solvation = 22.709115 kcal Electronic energy + Delta-G solvation = -24861.744356 eV Core-core repulsion = 21156.891991 eV Total energy + Delta-G solvation = -3704.852365 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.72264 -41.57949 -40.42114 -38.31762 -37.42715 -35.86067 -34.44165 -33.16702 -31.18021 -30.67640 -29.73893 -28.55010 -27.24864 -24.98817 -23.52496 -23.18269 -22.66606 -21.61140 -21.07055 -19.92458 -19.46207 -18.74669 -17.75992 -17.29469 -16.99449 -16.68925 -16.45775 -16.05107 -15.75983 -15.69849 -15.42483 -15.12790 -14.83721 -14.77945 -14.41297 -14.25970 -14.24929 -14.03978 -13.40932 -13.24770 -12.91907 -12.74569 -12.58619 -12.52029 -12.10977 -12.03193 -11.67634 -11.50633 -11.38247 -11.10469 -10.87235 -10.82529 -9.70620 -9.46513 -9.01685 -8.52449 -6.25161 -0.08592 0.46564 0.59660 1.32395 1.35768 1.40131 1.52227 1.62702 1.76651 2.08975 2.27299 2.72623 2.74929 3.02784 3.06797 3.25535 3.49936 3.67683 3.86379 4.04068 4.22462 4.24407 4.26277 4.33625 4.37941 4.49534 4.52602 4.56250 4.80067 4.85369 4.88898 5.01570 5.08643 5.25857 5.26946 5.36572 5.45228 5.56142 5.69293 5.77825 5.83783 6.12724 6.16120 6.75789 6.80992 6.82201 7.54041 8.58559 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.016297 B = 0.003417 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.735112 B = 8192.947091 C = 9579.833473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.015 3.985 3 Si 0.966 3.034 4 H -0.269 1.269 5 H -0.267 1.267 6 H -0.260 1.260 7 C -0.401 4.401 8 H 0.083 0.917 9 O -0.237 6.237 10 C 0.143 3.857 11 C -0.197 4.197 12 C -0.049 4.049 13 C -0.192 4.192 14 C 0.177 3.823 15 N -0.662 5.662 16 C 0.596 3.404 17 O -0.538 6.538 18 C -0.095 4.095 19 C 0.074 3.926 20 N -0.519 5.519 21 C 0.221 3.779 22 N -0.465 5.465 23 C 0.070 3.930 24 C -0.111 4.111 25 C -0.042 4.042 26 C -0.253 4.253 27 H 0.285 0.715 28 H 0.138 0.862 29 H 0.163 0.837 30 H 0.130 0.870 31 H 0.412 0.588 32 H 0.194 0.806 33 H 0.099 0.901 34 H 0.108 0.892 35 H 0.138 0.862 36 H 0.101 0.899 37 H 0.121 0.879 38 H 0.121 0.879 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.814 -18.519 2.492 18.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.184 4.184 3 Si 0.788 3.212 4 H -0.195 1.195 5 H -0.192 1.192 6 H -0.184 1.184 7 C -0.477 4.477 8 H 0.101 0.899 9 O -0.144 6.144 10 C 0.093 3.907 11 C -0.216 4.216 12 C -0.067 4.067 13 C -0.212 4.212 14 C 0.084 3.916 15 N -0.307 5.307 16 C 0.386 3.614 17 O -0.415 6.415 18 C -0.210 4.210 19 C -0.081 4.081 20 N -0.238 5.238 21 C -0.042 4.042 22 N -0.149 5.149 23 C -0.050 4.050 24 C -0.149 4.149 25 C -0.081 4.081 26 C -0.274 4.274 27 H 0.095 0.905 28 H 0.156 0.844 29 H 0.181 0.819 30 H 0.148 0.852 31 H 0.249 0.751 32 H 0.211 0.789 33 H 0.118 0.882 34 H 0.126 0.874 35 H 0.156 0.844 36 H 0.120 0.880 37 H 0.139 0.861 38 H 0.139 0.861 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.178 -18.619 1.902 18.716 hybrid contribution -0.423 1.557 0.193 1.625 sum -0.601 -17.062 2.095 17.200 Atomic orbital electron populations 1.69707 1.06775 1.29633 1.49758 1.25216 0.95847 1.01976 0.95356 0.85280 0.79072 0.77648 0.79177 1.19460 1.19166 1.18410 1.20683 0.77970 0.96140 1.52910 0.89909 1.83567 1.21390 1.26789 1.82681 1.19323 0.92838 0.84648 0.93912 1.20595 0.90620 0.99918 1.10497 1.21001 1.00798 0.89865 0.95085 1.20933 0.91811 1.00069 1.08411 1.17463 0.91615 0.84664 0.97896 1.43365 1.19862 1.15875 1.51566 1.17163 0.84791 0.81846 0.77609 1.90832 1.22165 1.80900 1.47617 1.20509 0.90397 0.98408 1.11640 1.22849 0.99351 0.87403 0.98522 1.69849 1.02434 1.31256 1.20266 1.25621 0.98721 0.84093 0.95795 1.46800 1.14502 1.16117 1.37433 1.23133 0.87410 1.00074 0.94369 1.22849 1.02679 0.90818 0.98545 1.21123 0.86650 1.02365 0.97980 1.20860 1.00635 0.91444 1.14509 0.90532 0.84396 0.81926 0.85223 0.75079 0.78935 0.88235 0.87388 0.84363 0.88014 0.86121 0.86054 0.86251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.72 13.96 21.61 0.30 -52.42 16 2 C 0.02 0.85 5.49 84.83 0.47 1.31 16 3 Si 0.97 44.08 28.62 68.60 1.96 46.04 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 6 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 7 C -0.40 -22.72 9.90 67.92 0.67 -22.05 16 8 H 0.08 4.85 5.53 -2.91 -0.02 4.83 16 9 O -0.24 -12.49 8.58 -22.71 -0.19 -12.68 16 10 C 0.14 6.57 6.64 22.56 0.15 6.72 16 11 C -0.20 -7.47 9.99 22.42 0.22 -7.24 16 12 C -0.05 -1.60 10.03 22.23 0.22 -1.38 16 13 C -0.19 -6.81 8.65 22.43 0.19 -6.62 16 14 C 0.18 6.70 6.26 38.16 0.24 6.94 16 15 N -0.66 -21.07 5.33 -307.08 -1.64 -22.71 16 16 C 0.60 19.46 7.52 86.46 0.65 20.11 16 17 O -0.54 -20.48 14.62 -4.31 -0.06 -20.54 16 18 C -0.10 -2.65 7.08 39.93 0.28 -2.37 16 19 C 0.07 2.04 11.65 84.10 0.98 3.02 16 20 N -0.52 -13.67 11.21 -186.44 -2.09 -15.76 16 21 C 0.22 4.43 8.56 138.42 1.19 5.62 16 22 N -0.46 -9.71 3.58 -496.48 -1.78 -11.49 16 23 C 0.07 0.85 6.55 86.76 0.57 1.42 16 24 C -0.11 -0.51 7.18 31.59 0.23 -0.28 16 25 C -0.04 -0.34 6.86 30.67 0.21 -0.13 16 26 C -0.25 -10.98 9.05 22.52 0.20 -10.78 16 27 H 0.29 15.04 8.31 -92.71 -0.77 14.27 16 28 H 0.14 4.69 8.06 -2.91 -0.02 4.67 16 29 H 0.16 3.93 8.06 -2.91 -0.02 3.91 16 30 H 0.13 4.49 6.45 -2.91 -0.02 4.47 16 31 H 0.41 10.94 6.66 -92.71 -0.62 10.32 16 32 H 0.19 4.81 8.06 -2.91 -0.02 4.79 16 33 H 0.10 1.16 7.46 -2.39 -0.02 1.14 16 34 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.14 -0.11 8.14 -2.39 -0.02 -0.13 16 36 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 37 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.12 0.61 8.14 -2.38 -0.02 0.59 16 39 H 0.12 5.49 5.71 -2.91 -0.02 5.47 16 Total: -1.00 -75.40 333.64 3.47 -71.93 By element: Atomic # 1 Polarization: 22.86 SS G_CDS: 0.50 Total: 23.36 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: 6.48 Total: -5.72 kcal Atomic # 7 Polarization: -97.17 SS G_CDS: -5.20 Total: -102.38 kcal Atomic # 8 Polarization: -32.97 SS G_CDS: -0.26 Total: -33.23 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 1.96 Total: 46.04 kcal Total: -75.40 3.47 -71.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822400463.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.635 kcal (2) G-P(sol) polarization free energy of solvation -75.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds