Wall clock time and date at job start Fri Apr 10 2020 22:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46916 * 2 1 4 4 H 1.09001 * 109.47321 * 54.76970 * 3 2 1 5 5 C 1.53003 * 109.46913 * 174.76990 * 3 2 1 6 6 O 1.42897 * 109.47150 * 55.12283 * 5 3 2 7 7 N 1.46896 * 109.47159 * 294.76793 * 3 2 1 8 8 C 1.46902 * 110.99870 * 169.10465 * 7 3 2 9 9 C 1.46901 * 110.99987 * 293.05867 * 7 3 2 10 10 C 1.50703 * 109.47272 * 163.60965 * 9 7 3 11 11 C 1.38105 * 120.02590 * 260.02075 * 10 9 7 12 12 C 1.38385 * 120.05643 * 179.97438 * 11 10 9 13 13 Cl 1.73600 * 119.94554 * 179.97438 * 12 11 10 14 14 C 1.38438 * 120.11147 * 0.02562 * 12 11 10 15 15 C 1.38064 * 120.05192 * 359.67941 * 14 12 11 16 16 C 1.38856 * 120.02650 * 79.99482 * 10 9 7 17 17 O 1.35764 * 120.06097 * 0.03077 * 16 10 9 18 18 C 1.34825 * 117.00018 * 174.39927 * 17 16 10 19 19 H 1.07995 * 120.00358 * 5.14977 * 18 17 16 20 20 C 1.38649 * 119.99695 * 185.15699 * 18 17 16 21 21 N 1.31559 * 120.00120 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00077 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46997 * 59.99888 * 22 20 18 24 24 H 1.48497 * 109.47249 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.46988 * 300.00016 * 22 20 18 26 26 H 1.08998 * 109.47262 * 185.05602 * 1 2 3 27 27 H 1.09003 * 109.47225 * 305.05660 * 1 2 3 28 28 H 1.08995 * 109.47110 * 65.05703 * 1 2 3 29 29 H 1.09001 * 109.46932 * 240.00143 * 2 1 3 30 30 H 1.09003 * 109.47123 * 120.00305 * 2 1 3 31 31 H 1.09001 * 109.46797 * 175.12758 * 5 3 2 32 32 H 1.09003 * 109.46636 * 295.12356 * 5 3 2 33 33 H 0.96700 * 113.99738 * 179.97438 * 6 5 3 34 34 H 1.09005 * 109.47159 * 191.97903 * 8 7 3 35 35 H 1.08996 * 109.47270 * 311.97878 * 8 7 3 36 36 H 1.08999 * 109.47384 * 71.98427 * 8 7 3 37 37 H 1.08995 * 109.47166 * 43.60340 * 9 7 3 38 38 H 1.09000 * 109.46984 * 283.60568 * 9 7 3 39 39 H 1.08001 * 119.97699 * 359.97438 * 11 10 9 40 40 H 1.08003 * 119.96835 * 179.97438 * 14 12 11 41 41 H 1.08004 * 120.02432 * 180.30051 * 15 14 12 42 42 H 0.97003 * 120.00288 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6021 1.9827 0.8394 5 6 3.5643 1.4445 0.1315 6 8 4.1329 0.6415 -0.9048 7 7 1.6561 2.0976 -1.2575 8 6 1.8972 3.5452 -1.1920 9 6 2.3593 1.4979 -2.3995 10 6 1.6689 1.8943 -3.6790 11 6 0.8028 1.0146 -4.2981 12 6 0.1681 1.3781 -5.4729 13 17 -0.9196 0.2698 -6.2490 14 6 0.3998 2.6238 -6.0308 15 6 1.2600 3.5091 -5.4124 16 6 1.9026 3.1445 -4.2362 17 8 2.7537 4.0111 -3.6296 18 6 3.0253 5.1596 -4.2815 19 1 2.5095 5.3937 -5.2010 20 6 3.9671 6.0401 -3.7714 21 7 4.5952 5.7551 -2.6511 22 14 4.3441 7.6310 -4.6749 23 1 3.1078 8.4473 -4.7767 24 1 5.3794 8.3906 -3.9289 25 1 4.8452 7.3196 -6.0377 26 1 -0.3634 -1.0236 0.0906 27 1 -0.3634 0.5903 0.8412 28 1 -0.3633 0.4334 -0.9318 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.9351 2.4658 0.0447 32 1 3.8457 1.0371 1.1026 33 1 5.0986 0.5976 -0.8832 34 1 1.4148 4.0326 -2.0393 35 1 1.4858 3.9403 -0.2632 36 1 2.9697 3.7368 -1.2250 37 1 2.3498 0.4123 -2.3027 38 1 3.3900 1.8521 -2.4181 39 1 0.6206 0.0421 -3.8652 40 1 -0.0965 2.9049 -6.9479 41 1 1.4367 4.4826 -5.8455 42 1 5.2538 6.3713 -2.2941 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830343676.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:52:31 Heat of formation + Delta-G solvation = -54.921420 kcal Electronic energy + Delta-G solvation = -25273.569335 eV Core-core repulsion = 21666.458151 eV Total energy + Delta-G solvation = -3607.111184 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.123 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.60429 -38.33980 -36.75145 -35.55031 -35.16543 -32.88752 -32.30786 -30.86026 -28.80537 -27.94015 -26.31117 -25.32267 -23.86934 -22.58541 -21.60948 -20.81469 -19.07405 -18.06061 -17.38391 -16.84714 -15.70117 -15.21251 -15.15171 -14.68049 -14.55525 -14.29060 -14.04098 -13.68208 -13.31187 -12.97017 -12.81675 -12.46425 -12.36978 -12.33737 -11.95437 -11.85819 -11.80984 -11.28084 -11.14957 -11.11994 -10.92128 -10.87113 -10.65777 -10.54377 -10.43442 -10.31472 -10.12664 -10.06332 -9.59267 -9.37122 -8.85846 -8.19846 -7.51423 -7.16019 -6.54301 -4.10808 2.07242 2.16502 2.89271 3.08409 3.09609 3.11352 3.90012 4.29714 4.52505 4.77751 5.02846 5.09057 5.18575 5.29825 5.51701 5.54898 5.58596 5.64613 5.76042 5.83793 5.93898 5.99397 6.02588 6.17763 6.23141 6.28672 6.36568 6.50862 6.54637 6.63568 6.67208 6.75141 6.86661 6.94662 7.07762 7.18151 7.20046 7.31129 7.64972 7.78595 7.80558 7.85913 7.92394 8.92601 9.59321 10.62340 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.009081 B = 0.006565 C = 0.004094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3082.468072 B = 4263.888753 C = 6837.956470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.109 4.109 3 C 0.085 3.915 4 H 0.085 0.915 5 C 0.043 3.957 6 O -0.559 6.559 7 N -0.526 5.526 8 C 0.028 3.972 9 C 0.122 3.878 10 C -0.136 4.136 11 C -0.051 4.051 12 C -0.122 4.122 13 Cl -0.110 7.110 14 C -0.065 4.065 15 C -0.226 4.226 16 C 0.159 3.841 17 O -0.160 6.160 18 C -0.394 4.394 19 H 0.090 0.910 20 C 0.045 3.955 21 N -0.858 5.858 22 Si 0.937 3.063 23 H -0.270 1.270 24 H -0.279 1.279 25 H -0.271 1.271 26 H 0.041 0.959 27 H 0.045 0.955 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.038 0.962 33 H 0.369 0.631 34 H 0.079 0.921 35 H 0.040 0.960 36 H 0.052 0.948 37 H 0.076 0.924 38 H 0.063 0.937 39 H 0.120 0.880 40 H 0.115 0.885 41 H 0.133 0.867 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.204 -7.415 3.409 8.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.147 4.147 3 C -0.024 4.024 4 H 0.103 0.897 5 C -0.037 4.037 6 O -0.364 6.364 7 N -0.249 5.249 8 C -0.119 4.119 9 C -0.004 4.004 10 C -0.138 4.138 11 C -0.071 4.071 12 C -0.149 4.149 13 Cl -0.082 7.082 14 C -0.084 4.084 15 C -0.246 4.246 16 C 0.105 3.895 17 O -0.063 6.063 18 C -0.470 4.470 19 H 0.107 0.893 20 C -0.159 4.159 21 N -0.492 5.492 22 Si 0.761 3.239 23 H -0.195 1.195 24 H -0.204 1.204 25 H -0.196 1.196 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.216 0.784 34 H 0.097 0.903 35 H 0.058 0.942 36 H 0.071 0.929 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.138 0.862 40 H 0.133 0.867 41 H 0.151 0.849 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.120 -7.531 3.507 9.273 hybrid contribution 1.508 1.120 -0.323 1.906 sum -2.613 -6.411 3.184 7.620 Atomic orbital electron populations 1.21656 0.95610 1.00069 1.02621 1.21473 0.96094 0.95360 1.01728 1.21932 0.90585 0.96060 0.93841 0.89690 1.22951 0.96323 0.94749 0.89668 1.86668 1.24717 1.72359 1.52692 1.62305 1.57073 1.04208 1.01354 1.22528 1.01816 0.86570 1.01002 1.20810 0.95353 0.98486 0.85778 1.19004 1.03078 0.92458 0.99297 1.20388 0.94675 0.98929 0.93113 1.20317 1.02898 0.92951 0.98692 1.98272 1.64560 1.63848 1.81492 1.20593 0.97305 0.91742 0.98772 1.21079 1.03066 1.01461 0.98952 1.19230 0.90187 0.89561 0.90560 1.84112 1.53752 1.26697 1.41728 1.21281 1.23077 0.94526 1.08128 0.89277 1.25182 0.95208 0.99175 0.96377 1.69991 1.24200 1.36549 1.18499 0.85841 0.78630 0.80278 0.79102 1.19536 1.20376 1.19577 0.93967 0.93580 0.91363 0.90992 0.92835 0.92993 0.94408 0.78386 0.90275 0.94153 0.92931 0.90604 0.91880 0.86240 0.86691 0.84911 0.92081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.74 37.16 0.36 -1.47 16 2 C -0.11 -1.45 5.08 -26.73 -0.14 -1.59 16 3 C 0.09 1.26 2.28 -67.71 -0.15 1.11 16 4 H 0.09 1.20 7.89 -51.93 -0.41 0.79 16 5 C 0.04 0.61 6.34 37.16 0.24 0.84 16 6 O -0.56 -8.10 9.19 -35.23 -0.32 -8.42 16 7 N -0.53 -9.39 4.20 -236.33 -0.99 -10.38 16 8 C 0.03 0.57 7.66 60.07 0.46 1.03 16 9 C 0.12 2.32 3.25 -4.97 -0.02 2.30 16 10 C -0.14 -2.78 5.29 -104.44 -0.55 -3.33 16 11 C -0.05 -0.96 9.45 -39.58 -0.37 -1.33 16 12 C -0.12 -2.22 6.32 -39.45 -0.25 -2.47 16 13 Cl -0.11 -1.75 28.95 -51.86 -1.50 -3.26 16 14 C -0.07 -1.21 9.82 -39.57 -0.39 -1.60 16 15 C -0.23 -4.74 9.16 -39.40 -0.36 -5.10 16 16 C 0.16 3.60 5.66 -39.11 -0.22 3.37 16 17 O -0.16 -4.03 5.78 0.02 0.00 -4.03 16 18 C -0.39 -10.10 9.49 30.88 0.29 -9.81 16 19 H 0.09 2.16 5.21 -52.49 -0.27 1.89 16 20 C 0.05 1.15 5.49 -17.52 -0.10 1.06 16 21 N -0.86 -22.80 13.67 55.48 0.76 -22.04 16 22 Si 0.94 19.49 29.55 -169.99 -5.02 14.46 16 23 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 24 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 25 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 26 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 1.01 7.90 -51.93 -0.41 0.60 16 29 H 0.07 1.05 5.79 -51.93 -0.30 0.75 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.85 6.80 -51.93 -0.35 0.49 16 32 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.37 4.05 9.12 45.56 0.42 4.46 16 34 H 0.08 1.83 5.61 -51.93 -0.29 1.54 16 35 H 0.04 0.73 7.88 -51.93 -0.41 0.33 16 36 H 0.05 1.20 6.48 -51.93 -0.34 0.87 16 37 H 0.08 1.36 5.15 -51.93 -0.27 1.09 16 38 H 0.06 1.37 6.05 -51.93 -0.31 1.05 16 39 H 0.12 2.01 8.04 -52.49 -0.42 1.59 16 40 H 0.12 1.88 8.06 -52.48 -0.42 1.46 16 41 H 0.13 2.75 5.64 -52.48 -0.30 2.45 16 42 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 LS Contribution 344.16 15.07 5.19 5.19 Total: -1.00 -26.86 344.16 -8.01 -34.88 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -4.92 Total: 10.60 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: -1.20 Total: -16.98 kcal Atomic # 7 Polarization: -32.19 SS G_CDS: -0.23 Total: -32.43 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: -0.32 Total: -12.46 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.02 Total: 14.46 kcal Atomic # 17 Polarization: -1.75 SS G_CDS: -1.50 Total: -3.26 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -26.86 -8.01 -34.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830343676.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.046 kcal (2) G-P(sol) polarization free energy of solvation -26.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds