Wall clock time and date at job start Fri Apr 10 2020 22:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46916 * 2 1 4 4 H 1.09001 * 109.47321 * 54.76970 * 3 2 1 5 5 C 1.53003 * 109.46913 * 174.76990 * 3 2 1 6 6 O 1.42897 * 109.47150 * 55.12283 * 5 3 2 7 7 N 1.46896 * 109.47159 * 294.76793 * 3 2 1 8 8 C 1.46902 * 110.99870 * 169.10465 * 7 3 2 9 9 C 1.46901 * 110.99987 * 293.05867 * 7 3 2 10 10 C 1.50703 * 109.47272 * 163.60965 * 9 7 3 11 11 C 1.38105 * 120.02590 * 260.02075 * 10 9 7 12 12 C 1.38385 * 120.05643 * 179.97438 * 11 10 9 13 13 Cl 1.73600 * 119.94554 * 179.97438 * 12 11 10 14 14 C 1.38438 * 120.11147 * 0.02562 * 12 11 10 15 15 C 1.38064 * 120.05192 * 359.67941 * 14 12 11 16 16 C 1.38856 * 120.02650 * 79.99482 * 10 9 7 17 17 O 1.35764 * 120.06097 * 0.03077 * 16 10 9 18 18 C 1.34825 * 117.00018 * 174.39927 * 17 16 10 19 19 H 1.07995 * 120.00358 * 5.14977 * 18 17 16 20 20 C 1.38649 * 119.99695 * 185.15699 * 18 17 16 21 21 N 1.31559 * 120.00120 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00077 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46997 * 59.99888 * 22 20 18 24 24 H 1.48497 * 109.47249 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.46988 * 300.00016 * 22 20 18 26 26 H 1.08998 * 109.47262 * 185.05602 * 1 2 3 27 27 H 1.09003 * 109.47225 * 305.05660 * 1 2 3 28 28 H 1.08995 * 109.47110 * 65.05703 * 1 2 3 29 29 H 1.09001 * 109.46932 * 240.00143 * 2 1 3 30 30 H 1.09003 * 109.47123 * 120.00305 * 2 1 3 31 31 H 1.09001 * 109.46797 * 175.12758 * 5 3 2 32 32 H 1.09003 * 109.46636 * 295.12356 * 5 3 2 33 33 H 0.96700 * 113.99738 * 179.97438 * 6 5 3 34 34 H 1.09005 * 109.47159 * 191.97903 * 8 7 3 35 35 H 1.08996 * 109.47270 * 311.97878 * 8 7 3 36 36 H 1.08999 * 109.47384 * 71.98427 * 8 7 3 37 37 H 1.08995 * 109.47166 * 43.60340 * 9 7 3 38 38 H 1.09000 * 109.46984 * 283.60568 * 9 7 3 39 39 H 1.08001 * 119.97699 * 359.97438 * 11 10 9 40 40 H 1.08003 * 119.96835 * 179.97438 * 14 12 11 41 41 H 1.08004 * 120.02432 * 180.30051 * 15 14 12 42 42 H 0.97003 * 120.00288 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6021 1.9827 0.8394 5 6 3.5643 1.4445 0.1315 6 8 4.1329 0.6415 -0.9048 7 7 1.6561 2.0976 -1.2575 8 6 1.8972 3.5452 -1.1920 9 6 2.3593 1.4979 -2.3995 10 6 1.6689 1.8943 -3.6790 11 6 0.8028 1.0146 -4.2981 12 6 0.1681 1.3781 -5.4729 13 17 -0.9196 0.2698 -6.2490 14 6 0.3998 2.6238 -6.0308 15 6 1.2600 3.5091 -5.4124 16 6 1.9026 3.1445 -4.2362 17 8 2.7537 4.0111 -3.6296 18 6 3.0253 5.1596 -4.2815 19 1 2.5095 5.3937 -5.2010 20 6 3.9671 6.0401 -3.7714 21 7 4.5952 5.7551 -2.6511 22 14 4.3441 7.6310 -4.6749 23 1 3.1078 8.4473 -4.7767 24 1 5.3794 8.3906 -3.9289 25 1 4.8452 7.3196 -6.0377 26 1 -0.3634 -1.0236 0.0906 27 1 -0.3634 0.5903 0.8412 28 1 -0.3633 0.4334 -0.9318 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.9351 2.4658 0.0447 32 1 3.8457 1.0371 1.1026 33 1 5.0986 0.5976 -0.8832 34 1 1.4148 4.0326 -2.0393 35 1 1.4858 3.9403 -0.2632 36 1 2.9697 3.7368 -1.2250 37 1 2.3498 0.4123 -2.3027 38 1 3.3900 1.8521 -2.4181 39 1 0.6206 0.0421 -3.8652 40 1 -0.0965 2.9049 -6.9479 41 1 1.4367 4.4826 -5.8455 42 1 5.2538 6.3713 -2.2941 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830343676.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:52:31 Heat of formation + Delta-G solvation = -71.541611 kcal Electronic energy + Delta-G solvation = -25274.290040 eV Core-core repulsion = 21666.458151 eV Total energy + Delta-G solvation = -3607.831890 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.123 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.19151 -39.71169 -38.36974 -36.98991 -36.44711 -34.30168 -34.02106 -32.35437 -30.39502 -29.18683 -27.95987 -27.12775 -25.25480 -23.81022 -23.25518 -22.30147 -20.41585 -19.82987 -18.79799 -18.32977 -17.10836 -16.80909 -16.66228 -16.20540 -16.12289 -15.73224 -15.34970 -15.17062 -14.85939 -14.59482 -14.12710 -13.96617 -13.83717 -13.66730 -13.57419 -13.27646 -13.09902 -12.78303 -12.77200 -12.61421 -12.36262 -12.29053 -12.15204 -11.90905 -11.79882 -11.73836 -11.54527 -11.37637 -11.12298 -10.74087 -10.68418 -9.76073 -9.02709 -8.80376 -8.41611 -6.05420 0.48753 0.56283 1.37727 1.40661 1.45324 1.50162 2.18934 2.71926 3.08726 3.30817 3.48503 3.53624 3.93176 4.02759 4.07873 4.14325 4.37536 4.38736 4.45935 4.51009 4.59637 4.64595 4.73854 4.80716 4.87521 4.90923 4.97835 5.06099 5.17113 5.20048 5.23953 5.27987 5.42443 5.46364 5.49940 5.54596 5.63518 5.68350 6.01699 6.06183 6.25607 6.40204 6.85777 7.03726 7.80080 8.77673 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.009081 B = 0.006565 C = 0.004094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3082.468072 B = 4263.888753 C = 6837.956470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.101 4.101 3 C 0.078 3.922 4 H 0.096 0.904 5 C 0.048 3.952 6 O -0.573 6.573 7 N -0.522 5.522 8 C 0.050 3.950 9 C 0.138 3.862 10 C -0.146 4.146 11 C -0.050 4.050 12 C -0.113 4.113 13 Cl -0.079 7.079 14 C -0.063 4.063 15 C -0.236 4.236 16 C 0.131 3.869 17 O -0.189 6.189 18 C -0.415 4.415 19 H 0.095 0.905 20 C -0.006 4.006 21 N -0.900 5.900 22 Si 1.003 2.997 23 H -0.262 1.262 24 H -0.275 1.275 25 H -0.264 1.264 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.045 0.955 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.022 0.978 32 H 0.069 0.931 33 H 0.384 0.616 34 H 0.047 0.953 35 H 0.055 0.945 36 H 0.019 0.981 37 H 0.090 0.910 38 H 0.031 0.969 39 H 0.142 0.858 40 H 0.142 0.858 41 H 0.129 0.871 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.628 -9.007 3.144 10.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.138 4.138 3 C -0.030 4.030 4 H 0.114 0.886 5 C -0.031 4.031 6 O -0.380 6.380 7 N -0.245 5.245 8 C -0.098 4.098 9 C 0.012 3.988 10 C -0.148 4.148 11 C -0.069 4.069 12 C -0.140 4.140 13 Cl -0.051 7.051 14 C -0.082 4.082 15 C -0.256 4.256 16 C 0.079 3.921 17 O -0.094 6.094 18 C -0.491 4.491 19 H 0.112 0.888 20 C -0.205 4.205 21 N -0.537 5.537 22 Si 0.824 3.176 23 H -0.187 1.187 24 H -0.200 1.200 25 H -0.188 1.188 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.040 0.960 32 H 0.087 0.913 33 H 0.233 0.767 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.037 0.963 37 H 0.108 0.892 38 H 0.049 0.951 39 H 0.160 0.840 40 H 0.160 0.840 41 H 0.147 0.853 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.569 -9.163 3.225 11.197 hybrid contribution 1.784 1.372 -0.301 2.270 sum -3.785 -7.791 2.924 9.142 Atomic orbital electron populations 1.21611 0.95069 1.01139 1.01716 1.21419 0.96437 0.93753 1.02216 1.22141 0.91262 0.97165 0.92465 0.88581 1.22848 0.95823 0.93430 0.91016 1.86604 1.26194 1.72057 1.53174 1.62288 1.56811 1.02806 1.02612 1.22174 0.99188 0.88264 1.00202 1.20612 0.93504 0.98872 0.85860 1.19314 1.03428 0.92110 0.99922 1.20627 0.93827 0.99360 0.93067 1.20498 1.02135 0.93179 0.98184 1.98289 1.63332 1.62635 1.80843 1.20842 0.96508 0.91434 0.99418 1.21189 1.03638 1.01943 0.98789 1.19684 0.90500 0.90309 0.91626 1.84125 1.55433 1.27172 1.42657 1.21671 1.23566 0.95282 1.08568 0.88783 1.26198 0.94899 1.02300 0.97139 1.70132 1.25347 1.37928 1.20264 0.84850 0.78594 0.76161 0.77959 1.18685 1.19978 1.18842 0.92197 0.92879 0.93568 0.92200 0.90522 0.95972 0.91319 0.76717 0.93452 0.92615 0.96278 0.89220 0.95095 0.83992 0.83976 0.85336 0.92185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 9.74 71.98 0.70 -2.50 16 2 C -0.10 -2.45 5.08 30.59 0.16 -2.29 16 3 C 0.08 2.25 2.28 44.92 0.10 2.35 16 4 H 0.10 2.56 7.89 -2.39 -0.02 2.54 16 5 C 0.05 1.36 6.34 71.98 0.46 1.82 16 6 O -0.57 -16.52 9.19 -148.98 -1.37 -17.89 16 7 N -0.52 -18.86 4.20 -901.61 -3.79 -22.65 16 8 C 0.05 2.13 7.66 127.69 0.98 3.10 16 9 C 0.14 5.35 3.25 85.56 0.28 5.63 16 10 C -0.15 -6.01 5.29 -19.75 -0.10 -6.11 16 11 C -0.05 -1.77 9.45 22.27 0.21 -1.56 16 12 C -0.11 -3.88 6.32 22.35 0.14 -3.74 16 13 Cl -0.08 -2.28 28.95 -2.72 -0.08 -2.36 16 14 C -0.06 -2.26 9.82 22.28 0.22 -2.04 16 15 C -0.24 -10.00 9.16 22.39 0.21 -9.79 16 16 C 0.13 6.13 5.66 22.58 0.13 6.26 16 17 O -0.19 -10.09 5.78 -22.85 -0.13 -10.23 16 18 C -0.41 -22.30 9.49 67.92 0.64 -21.65 16 19 H 0.09 4.75 5.21 -2.91 -0.02 4.73 16 20 C -0.01 -0.29 5.49 84.83 0.47 0.17 16 21 N -0.90 -50.41 13.67 21.61 0.30 -50.11 16 22 Si 1.00 40.95 29.55 68.60 2.03 42.98 16 23 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 24 H -0.28 -10.91 7.11 99.48 0.71 -10.20 16 25 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 26 H 0.06 1.17 8.14 -2.39 -0.02 1.16 16 27 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.05 1.27 7.90 -2.39 -0.02 1.25 16 29 H 0.06 1.62 5.79 -2.39 -0.01 1.61 16 30 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.02 0.76 6.80 -2.39 -0.02 0.74 16 32 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.38 8.43 9.12 -74.06 -0.68 7.75 16 34 H 0.05 2.31 5.61 -2.38 -0.01 2.30 16 35 H 0.06 2.11 7.88 -2.39 -0.02 2.09 16 36 H 0.02 0.93 6.48 -2.39 -0.02 0.91 16 37 H 0.09 3.17 5.15 -2.39 -0.01 3.16 16 38 H 0.03 1.41 6.05 -2.39 -0.01 1.40 16 39 H 0.14 4.40 8.04 -2.91 -0.02 4.37 16 40 H 0.14 4.27 8.06 -2.91 -0.02 4.24 16 41 H 0.13 5.46 5.64 -2.91 -0.02 5.44 16 42 H 0.27 14.11 8.31 -92.71 -0.77 13.33 16 Total: -1.00 -60.69 344.16 1.91 -58.78 By element: Atomic # 1 Polarization: 31.46 SS G_CDS: 0.38 Total: 31.84 kcal Atomic # 6 Polarization: -34.94 SS G_CDS: 4.58 Total: -30.36 kcal Atomic # 7 Polarization: -69.27 SS G_CDS: -3.49 Total: -72.76 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: -1.50 Total: -28.12 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.98 kcal Atomic # 17 Polarization: -2.28 SS G_CDS: -0.08 Total: -2.36 kcal Total: -60.69 1.91 -58.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830343676.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.764 kcal (2) G-P(sol) polarization free energy of solvation -60.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds