Wall clock time and date at job start Fri Apr 10 2020 22:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 119.99991 * 2 1 4 4 H 1.48503 * 109.46535 * 269.99776 * 3 2 1 5 5 H 1.48497 * 109.47005 * 29.99202 * 3 2 1 6 6 H 1.48495 * 109.47372 * 149.99684 * 3 2 1 7 7 C 1.37877 * 120.00319 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00035 * 175.14828 * 7 2 1 9 9 C 1.50704 * 119.99772 * 355.41935 * 7 2 1 10 10 C 1.53002 * 115.55169 * 274.92999 * 9 7 2 11 11 N 1.46902 * 109.46866 * 294.79949 * 10 9 7 12 12 C 1.46898 * 110.99651 * 185.37362 * 11 10 9 13 13 C 1.53001 * 109.46844 * 179.97438 * 12 11 10 14 14 C 1.50704 * 109.47284 * 180.02562 * 13 12 11 15 15 C 1.38262 * 119.99934 * 269.73485 * 14 13 12 16 16 C 1.38213 * 119.99693 * 179.80575 * 15 14 13 17 17 C 1.38253 * 120.00153 * 0.41569 * 16 15 14 18 18 C 1.38220 * 119.99993 * 359.81739 * 17 16 15 19 19 C 1.50699 * 119.99805 * 179.97438 * 18 17 16 20 20 F 1.39903 * 109.46673 * 270.01401 * 19 18 17 21 21 F 1.39896 * 109.47602 * 30.01712 * 19 18 17 22 22 F 1.39901 * 109.47053 * 150.01853 * 19 18 17 23 23 C 1.38205 * 120.00096 * 89.99942 * 14 13 12 24 24 C 1.53004 * 117.49534 * 129.25757 * 9 7 2 25 25 C 1.52998 * 117.49596 * 60.60380 * 9 7 2 26 26 H 0.97004 * 120.00286 * 5.00657 * 1 2 3 27 27 H 1.08995 * 109.46680 * 54.79753 * 10 9 7 28 28 H 1.08993 * 109.47014 * 174.80229 * 10 9 7 29 29 H 1.00902 * 110.99538 * 61.42896 * 11 10 9 30 30 H 1.08996 * 109.47593 * 300.00366 * 12 11 10 31 31 H 1.09005 * 109.46551 * 60.00755 * 12 11 10 32 32 H 1.08996 * 109.47366 * 300.00556 * 13 12 11 33 33 H 1.09005 * 109.46888 * 60.01013 * 13 12 11 34 34 H 1.07998 * 120.00308 * 359.97438 * 15 14 13 35 35 H 1.08005 * 120.00110 * 180.20363 * 16 15 14 36 36 H 1.08001 * 120.00494 * 179.78740 * 17 16 15 37 37 H 1.08005 * 119.99862 * 359.97438 * 23 14 13 38 38 H 1.08998 * 117.49727 * 0.02562 * 24 9 7 39 39 H 1.09000 * 117.49374 * 145.02051 * 24 9 7 40 40 H 1.09004 * 117.49634 * 214.98118 * 25 9 7 41 41 H 1.08994 * 117.50107 * 359.96929 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0463 -1.4002 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0817 -1.1957 -0.0786 9 6 1.2546 -2.4970 0.1054 10 6 0.9188 -2.9527 1.5268 11 7 2.1614 -3.2474 2.2529 12 6 1.8751 -3.8093 3.5796 13 6 3.1905 -4.1032 4.3036 14 6 2.8970 -4.6802 5.6645 15 6 2.7579 -3.8422 6.7554 16 6 2.4847 -4.3711 8.0027 17 6 2.3589 -5.7388 8.1612 18 6 2.5027 -6.5769 7.0715 19 6 2.3662 -8.0677 7.2444 20 9 3.6177 -8.6195 7.5386 21 9 1.4799 -8.3364 8.2929 22 9 1.8744 -8.6312 6.0621 23 6 2.7721 -6.0475 5.8231 24 6 1.5731 -3.5803 -0.9272 25 6 0.2454 -2.8219 -0.9977 26 1 -0.4851 0.8369 -0.0733 27 1 0.3753 -2.1614 2.0430 28 1 0.3013 -3.8498 1.4844 29 1 2.7412 -2.4249 2.3260 30 1 1.2928 -3.0933 4.1596 31 1 1.3079 -4.7334 3.4681 32 1 3.7724 -4.8193 3.7235 33 1 3.7581 -3.1793 4.4152 34 1 2.8601 -2.7741 6.6324 35 1 2.3728 -3.7163 8.8543 36 1 2.1488 -6.1524 9.1365 37 1 2.8846 -6.7024 4.9717 38 1 2.3252 -3.3507 -1.6819 39 1 1.5430 -4.6177 -0.5938 40 1 -0.6578 -3.3605 -0.7107 41 1 0.1234 -2.0930 -1.7989 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600152543.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:52:21 Heat of formation + Delta-G solvation = -126.383686 kcal Electronic energy + Delta-G solvation = -25075.209778 eV Core-core repulsion = 20925.575867 eV Total energy + Delta-G solvation = -4149.633911 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.135 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -51.20287 -48.72209 -48.67142 -40.55859 -38.78376 -36.58779 -34.00935 -33.73690 -32.70305 -29.67320 -27.60080 -27.05909 -25.89810 -23.65074 -23.16076 -22.73077 -21.97779 -20.90252 -19.53505 -19.40678 -19.01873 -17.88092 -17.25359 -16.85792 -16.59560 -16.18840 -15.87107 -15.65586 -15.58491 -15.46500 -15.14367 -15.05377 -14.87113 -14.83438 -14.65747 -14.33944 -13.92417 -13.88462 -13.59856 -13.40333 -13.23773 -12.92255 -12.81875 -12.51352 -12.35221 -12.29963 -12.11444 -11.95964 -11.82516 -11.19652 -10.81144 -10.36243 -10.19465 -9.93369 -9.80763 -9.12149 -8.05323 -6.18265 -0.06082 0.25495 1.42942 1.45449 1.54383 1.63043 2.45028 2.47106 2.69326 2.98524 3.21777 3.28634 3.39625 3.70166 3.85957 3.94752 4.04698 4.18352 4.30869 4.31952 4.41363 4.45643 4.62234 4.66304 4.70001 4.74838 4.92406 4.96397 5.02480 5.05074 5.09799 5.18194 5.22935 5.32354 5.32728 5.54473 5.66877 5.72289 5.80800 5.83625 6.34434 6.50132 6.67635 6.91646 7.50248 9.01198 Molecular weight = 313.13amu Principal moments of inertia in cm(-1) A = 0.020567 B = 0.002614 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.048894 B =10707.368065 C =11523.989260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.023 3.977 3 Si 0.948 3.052 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.502 4.502 8 H 0.055 0.945 9 C 0.025 3.975 10 C 0.120 3.880 11 N -0.680 5.680 12 C 0.067 3.933 13 C -0.070 4.070 14 C -0.083 4.083 15 C -0.089 4.089 16 C -0.115 4.115 17 C -0.081 4.081 18 C -0.194 4.194 19 C 0.511 3.489 20 F -0.181 7.181 21 F -0.178 7.178 22 F -0.183 7.183 23 C -0.078 4.078 24 C -0.179 4.179 25 C -0.164 4.164 26 H 0.258 0.742 27 H 0.001 0.999 28 H 0.045 0.955 29 H 0.343 0.657 30 H 0.020 0.980 31 H 0.063 0.937 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.145 0.855 35 H 0.162 0.838 36 H 0.151 0.849 37 H 0.135 0.865 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.067 0.933 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.575 -11.731 18.761 22.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.177 4.177 3 Si 0.774 3.226 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.187 1.187 7 C -0.540 4.540 8 H 0.073 0.927 9 C 0.024 3.976 10 C -0.009 4.009 11 N -0.310 5.310 12 C -0.062 4.062 13 C -0.107 4.107 14 C -0.084 4.084 15 C -0.106 4.106 16 C -0.132 4.132 17 C -0.099 4.099 18 C -0.195 4.195 19 C 0.457 3.543 20 F -0.162 7.162 21 F -0.159 7.159 22 F -0.164 7.164 23 C -0.096 4.096 24 C -0.216 4.216 25 C -0.203 4.203 26 H 0.067 0.933 27 H 0.019 0.981 28 H 0.064 0.936 29 H 0.161 0.839 30 H 0.038 0.962 31 H 0.081 0.919 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.163 0.837 35 H 0.180 0.820 36 H 0.169 0.831 37 H 0.153 0.847 38 H 0.089 0.911 39 H 0.103 0.897 40 H 0.086 0.914 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.496 -12.272 18.540 22.903 hybrid contribution -0.367 1.408 0.023 1.455 sum 5.129 -10.864 18.563 22.111 Atomic orbital electron populations 1.70123 1.07136 1.27089 1.50442 1.25683 0.95488 1.01855 0.94625 0.85713 0.79047 0.79852 0.77996 1.20780 1.21387 1.18693 1.20711 0.92719 0.90019 1.50546 0.92701 1.18918 0.98190 0.93005 0.87446 1.21166 0.90009 0.95593 0.94162 1.60412 1.17518 1.36257 1.16846 1.21906 0.96657 0.98815 0.88832 1.20500 0.96984 1.02127 0.91129 1.19895 0.99642 0.92731 0.96096 1.21638 0.95662 1.01109 0.92234 1.21473 0.98828 0.94560 0.98362 1.21207 0.96509 0.93997 0.98156 1.20007 1.11658 0.90526 0.97351 1.18364 0.73646 0.88815 0.73519 1.93215 1.42109 1.87659 1.93244 1.93178 1.69223 1.95080 1.58459 1.93191 1.87964 1.87268 1.47989 1.20952 0.96825 0.95833 0.96023 1.22842 0.98289 0.96393 1.04120 1.22403 0.92014 1.01995 1.03840 0.93341 0.98077 0.93615 0.83877 0.96217 0.91866 0.89782 0.89826 0.83700 0.82022 0.83114 0.84671 0.91066 0.89741 0.91425 0.92492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.20 12.65 21.45 0.27 -50.93 16 2 C 0.02 1.25 5.43 84.66 0.46 1.71 16 3 Si 0.95 42.07 29.54 68.60 2.03 44.09 16 4 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 5 H -0.29 -12.71 7.11 99.48 0.71 -12.01 16 6 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 7 C -0.50 -26.43 8.33 25.60 0.21 -26.22 16 8 H 0.05 2.88 7.82 -2.91 -0.02 2.86 16 9 C 0.03 1.21 1.65 -52.92 -0.09 1.12 16 10 C 0.12 5.23 5.54 86.30 0.48 5.71 16 11 N -0.68 -24.75 6.47 -513.90 -3.32 -28.08 16 12 C 0.07 1.94 5.66 86.30 0.49 2.43 16 13 C -0.07 -1.57 5.61 29.85 0.17 -1.40 16 14 C -0.08 -1.67 5.13 -19.87 -0.10 -1.78 16 15 C -0.09 -1.50 9.70 22.27 0.22 -1.28 16 16 C -0.11 -1.60 10.05 22.27 0.22 -1.38 16 17 C -0.08 -1.26 9.40 22.27 0.21 -1.05 16 18 C -0.19 -3.73 5.45 -19.87 -0.11 -3.84 16 19 C 0.51 10.13 3.36 71.24 0.24 10.37 16 20 F -0.18 -3.71 17.30 44.97 0.78 -2.93 16 21 F -0.18 -3.44 16.46 44.97 0.74 -2.70 16 22 F -0.18 -4.01 16.46 44.97 0.74 -3.27 16 23 C -0.08 -1.60 9.05 22.27 0.20 -1.40 16 24 C -0.18 -7.83 9.96 30.62 0.30 -7.52 16 25 C -0.16 -7.87 9.14 30.62 0.28 -7.59 16 26 H 0.26 13.94 8.32 -92.70 -0.77 13.17 16 27 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 28 H 0.05 1.90 8.08 -2.39 -0.02 1.88 16 29 H 0.34 12.96 8.31 -89.69 -0.74 12.21 16 30 H 0.02 0.58 8.14 -2.39 -0.02 0.57 16 31 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 32 H 0.08 1.90 8.08 -2.39 -0.02 1.88 16 33 H 0.08 1.75 8.08 -2.38 -0.02 1.73 16 34 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 35 H 0.16 1.31 8.06 -2.91 -0.02 1.28 16 36 H 0.15 1.74 7.60 -2.91 -0.02 1.71 16 37 H 0.14 2.69 7.61 -2.91 -0.02 2.67 16 38 H 0.07 3.10 8.14 -2.39 -0.02 3.09 16 39 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 40 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 41 H 0.06 2.98 8.14 -2.39 -0.02 2.96 16 Total: -1.00 -58.60 360.68 4.71 -53.89 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: 0.30 Total: 22.04 kcal Atomic # 6 Polarization: -35.31 SS G_CDS: 3.18 Total: -32.12 kcal Atomic # 7 Polarization: -75.95 SS G_CDS: -3.05 Total: -79.01 kcal Atomic # 9 Polarization: -11.16 SS G_CDS: 2.26 Total: -8.90 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.09 kcal Total: -58.60 4.71 -53.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600152543.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.494 kcal (2) G-P(sol) polarization free energy of solvation -58.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds