Wall clock time and date at job start Fri Apr 10 2020 22:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 H 1.09005 * 109.47095 * 170.85980 * 3 2 1 5 5 N 1.46499 * 109.47059 * 290.86024 * 3 2 1 6 6 C 1.34778 * 120.00211 * 274.99760 * 5 3 2 7 7 O 1.21728 * 119.99568 * 0.02562 * 6 5 3 8 8 C 1.46251 * 120.00051 * 180.02562 * 6 5 3 9 9 C 1.35020 * 119.99746 * 173.22611 * 8 6 5 10 10 C 1.46960 * 120.00114 * 348.50565 * 9 8 6 11 11 C 1.40029 * 120.10159 * 316.62430 * 10 9 8 12 12 C 1.37600 * 119.89580 * 179.78984 * 11 10 9 13 13 C 1.39172 * 120.10226 * 0.48873 * 12 11 10 14 14 O 1.35576 * 119.89848 * 179.76305 * 13 12 11 15 15 C 1.34773 * 116.99827 * 174.34759 * 14 13 12 16 16 H 1.07998 * 120.00284 * 5.05993 * 15 14 13 17 17 C 1.38728 * 119.99674 * 185.06272 * 15 14 13 18 18 N 1.31500 * 120.00085 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99858 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46968 * 89.99437 * 19 17 15 21 21 H 1.48497 * 109.46964 * 209.99756 * 19 17 15 22 22 H 1.48503 * 109.47035 * 330.00248 * 19 17 15 23 23 C 1.39169 * 120.20487 * 359.74279 * 13 12 11 24 24 C 1.37597 * 120.10280 * 0.02562 * 23 13 12 25 25 C 1.52996 * 109.47071 * 50.86309 * 3 2 1 26 26 C 1.52995 * 109.47358 * 59.99917 * 25 3 2 27 27 C 1.52997 * 109.47307 * 179.97438 * 25 3 2 28 28 H 4.18745 * 15.03946 * 0.02562 * 4 2 1 29 29 H 0.97001 * 119.99748 * 95.00698 * 5 3 2 30 30 H 1.07992 * 119.99853 * 352.95076 * 8 6 5 31 31 H 1.08002 * 120.00212 * 168.51184 * 9 8 6 32 32 H 1.07996 * 120.04961 * 0.02562 * 11 10 9 33 33 H 1.07998 * 119.94465 * 180.23277 * 12 11 10 34 34 H 0.96995 * 120.00258 * 180.02562 * 18 17 15 35 35 H 1.07995 * 119.95327 * 179.97438 * 23 13 12 36 36 H 1.08001 * 120.05795 * 180.02562 * 24 23 13 37 37 H 1.09005 * 109.46892 * 299.99795 * 25 3 2 38 38 H 1.09002 * 109.47546 * 59.99670 * 26 25 3 39 39 H 1.08998 * 109.47463 * 180.02562 * 26 25 3 40 40 H 1.09009 * 109.47193 * 300.00279 * 26 25 3 41 41 H 1.09004 * 109.47562 * 179.97438 * 27 25 3 42 42 H 1.08995 * 109.47191 * 300.00425 * 27 25 3 43 43 H 1.09003 * 109.46943 * 59.99900 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0089 1.0155 -0.1633 5 7 3.1345 -0.4910 1.2907 6 6 3.2629 0.3573 2.3301 7 8 2.9725 1.5319 2.1966 8 6 3.7512 -0.1334 3.6185 9 6 4.0099 0.7366 4.6181 10 6 4.0470 2.1801 4.3447 11 6 4.6963 2.6619 3.2015 12 6 4.7247 4.0140 2.9475 13 6 4.1181 4.9029 3.8300 14 8 4.1527 6.2346 3.5781 15 6 3.4488 7.0323 4.4055 16 1 2.9581 6.6133 5.2716 17 6 3.3544 8.3915 4.1446 18 7 3.9522 8.9017 3.0903 19 14 2.3793 9.4973 5.2918 20 1 3.2737 10.0164 6.3576 21 1 1.8148 10.6346 4.5217 22 1 1.2744 8.7197 5.9082 23 6 3.4757 4.4290 4.9699 24 6 3.4381 3.0783 5.2298 25 6 3.1564 -0.9096 -1.1188 26 6 2.6462 -0.3961 -2.4667 27 6 4.6863 -0.9084 -1.1193 28 1 -1.0500 -0.0009 0.0006 29 1 3.3657 -1.4270 1.3971 30 1 3.9004 -1.1919 3.7716 31 1 4.1898 0.3717 5.6185 32 1 5.1709 1.9732 2.5183 33 1 5.2221 4.3862 2.0641 34 1 3.8866 9.8521 2.9081 35 1 3.0067 5.1224 5.6522 36 1 2.9390 2.7113 6.1144 37 1 2.7935 -1.9244 -0.9556 38 1 3.0089 0.6187 -2.6300 39 1 3.0094 -1.0449 -3.2638 40 1 1.5561 -0.3966 -2.4667 41 1 5.0500 -1.5573 -1.9161 42 1 5.0488 0.1064 -1.2827 43 1 5.0502 -1.2740 -0.1590 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491019860.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:51:36 Heat of formation + Delta-G solvation = 15.322914 kcal Electronic energy + Delta-G solvation = -24978.945017 eV Core-core repulsion = 21377.312706 eV Total energy + Delta-G solvation = -3601.632312 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.22456 -40.51228 -38.69794 -37.73156 -34.60369 -34.29447 -33.89236 -33.40974 -31.82485 -29.79348 -28.04640 -27.81761 -27.25568 -24.31848 -23.48913 -22.45554 -21.86145 -20.42608 -19.81368 -19.32192 -18.82229 -18.08319 -17.34642 -16.39818 -16.38532 -16.25189 -15.85605 -15.65097 -15.48416 -15.21070 -14.66707 -14.62915 -14.50779 -14.31328 -14.02692 -13.77146 -13.59419 -13.52766 -13.04472 -12.99015 -12.67452 -12.45657 -12.35696 -12.23540 -12.12844 -12.00873 -11.84202 -11.57539 -11.24727 -11.07133 -10.94566 -10.65737 -10.41865 -10.22952 -9.58858 -8.56117 -8.49027 -6.16483 -0.01449 0.71298 1.12200 1.32594 1.44698 1.51342 1.58425 1.84176 2.16498 2.45979 2.58601 2.86485 3.20230 3.39024 3.52312 3.82255 3.93919 3.99746 4.06143 4.14078 4.16757 4.27142 4.50855 4.54823 4.60540 4.67048 4.76754 4.78433 4.92657 4.98551 5.05302 5.08042 5.09094 5.16172 5.25061 5.26335 5.32480 5.40056 5.45629 5.50933 5.67575 5.72137 5.84463 6.01822 6.24810 6.63076 6.68929 6.94654 7.43004 7.76902 8.74117 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.015637 B = 0.003083 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.144396 B = 9080.501192 C = 9770.931769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.223 4.223 3 C 0.256 3.744 4 H 0.075 0.925 5 N -0.706 5.706 6 C 0.528 3.472 7 O -0.564 6.564 8 C -0.231 4.231 9 C 0.007 3.993 10 C -0.161 4.161 11 C 0.015 3.985 12 C -0.222 4.222 13 C 0.127 3.873 14 O -0.231 6.231 15 C -0.416 4.416 16 H 0.102 0.898 17 C -0.024 4.024 18 N -0.921 5.921 19 Si 1.022 2.978 20 H -0.259 1.259 21 H -0.270 1.270 22 H -0.254 1.254 23 C -0.260 4.260 24 C -0.048 4.048 25 C -0.084 4.084 26 C -0.147 4.147 27 C -0.146 4.146 28 H 0.242 0.758 29 H 0.418 0.582 30 H 0.176 0.824 31 H 0.170 0.830 32 H 0.121 0.879 33 H 0.101 0.899 34 H 0.274 0.726 35 H 0.119 0.881 36 H 0.148 0.852 37 H 0.096 0.904 38 H 0.047 0.953 39 H 0.081 0.919 40 H 0.051 0.949 41 H 0.078 0.922 42 H 0.043 0.957 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.936 -26.706 -3.131 26.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.224 4.224 3 C 0.151 3.849 4 H 0.093 0.907 5 N -0.359 5.359 6 C 0.318 3.682 7 O -0.444 6.444 8 C -0.251 4.251 9 C -0.012 4.012 10 C -0.162 4.162 11 C -0.003 4.003 12 C -0.242 4.242 13 C 0.077 3.923 14 O -0.138 6.138 15 C -0.492 4.492 16 H 0.119 0.881 17 C -0.221 4.221 18 N -0.559 5.559 19 Si 0.840 3.160 20 H -0.184 1.184 21 H -0.194 1.194 22 H -0.177 1.177 23 C -0.279 4.279 24 C -0.066 4.066 25 C -0.103 4.103 26 C -0.205 4.205 27 C -0.203 4.203 28 H 0.259 0.741 29 H 0.256 0.744 30 H 0.194 0.806 31 H 0.188 0.812 32 H 0.139 0.861 33 H 0.119 0.881 34 H 0.083 0.917 35 H 0.137 0.863 36 H 0.165 0.835 37 H 0.114 0.886 38 H 0.066 0.934 39 H 0.099 0.901 40 H 0.070 0.930 41 H 0.097 0.903 42 H 0.062 0.938 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.963 -25.566 -3.519 25.881 hybrid contribution -0.584 0.911 0.025 1.082 sum -2.546 -24.655 -3.494 25.031 Atomic orbital electron populations 1.25717 0.96892 0.99993 0.98587 1.23934 0.95593 1.01204 1.01688 1.17855 0.82890 0.99453 0.84681 0.90731 1.45846 1.66896 1.13360 1.09804 1.19204 0.77782 0.85456 0.85715 1.91020 1.51025 1.18426 1.83904 1.23042 1.07941 1.02018 0.92087 1.22589 0.89389 0.89501 0.99762 1.18892 1.05854 0.94402 0.97071 1.20682 0.93893 0.92110 0.93596 1.20193 1.09500 0.93540 1.00936 1.20006 0.93899 0.84284 0.94156 1.83872 1.63675 1.13408 1.52812 1.21889 1.30828 0.89569 1.06950 0.88063 1.26679 0.98528 0.97701 0.99227 1.70170 1.43346 1.14067 1.28282 0.84556 0.77880 0.76773 0.76760 1.18368 1.19450 1.17749 1.21084 1.09414 0.97432 0.99957 1.21187 0.96037 0.91037 0.98346 1.21283 0.97043 0.99083 0.92891 1.21821 1.01051 1.01461 0.96170 1.21853 0.93112 1.02127 1.03247 0.74149 0.74441 0.80636 0.81241 0.86107 0.88117 0.91744 0.86295 0.83478 0.88581 0.93377 0.90053 0.93008 0.90336 0.93787 0.91413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.42 19.25 74.32 1.43 -2.99 16 2 C -0.22 -5.63 11.57 31.13 0.36 -5.27 16 3 C 0.26 5.77 2.01 43.18 0.09 5.85 16 4 H 0.07 2.22 7.58 -2.38 -0.02 2.20 16 5 N -0.71 -13.81 4.35 -455.61 -1.98 -15.79 16 6 C 0.53 14.14 6.71 86.32 0.58 14.72 16 7 O -0.56 -21.98 11.84 -4.44 -0.05 -22.04 16 8 C -0.23 -4.47 9.90 23.61 0.23 -4.24 16 9 C 0.01 0.15 9.80 23.82 0.23 0.39 16 10 C -0.16 -5.65 4.54 -20.12 -0.09 -5.74 16 11 C 0.02 0.62 6.60 22.55 0.15 0.77 16 12 C -0.22 -11.01 9.97 22.34 0.22 -10.78 16 13 C 0.13 7.04 6.66 22.72 0.15 7.19 16 14 O -0.23 -15.03 9.74 -20.25 -0.20 -15.23 16 15 C -0.42 -25.74 9.48 67.94 0.64 -25.09 16 16 H 0.10 5.76 5.18 -2.91 -0.02 5.74 16 17 C -0.02 -1.43 5.49 84.86 0.47 -0.96 16 18 N -0.92 -58.93 13.67 21.62 0.30 -58.64 16 19 Si 1.02 44.69 29.55 68.60 2.03 46.72 16 20 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 21 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 22 H -0.25 -10.38 7.11 99.48 0.71 -9.67 16 23 C -0.26 -12.45 9.14 22.34 0.20 -12.24 16 24 C -0.05 -1.83 9.78 22.55 0.22 -1.61 16 25 C -0.08 -1.23 2.53 -10.80 -0.03 -1.26 16 26 C -0.15 -2.24 8.94 71.98 0.64 -1.60 16 27 C -0.15 -1.86 9.03 71.98 0.65 -1.21 16 28 H 0.24 3.66 7.80 -4.42 -0.03 3.63 16 29 H 0.42 4.73 8.37 -92.71 -0.78 3.95 16 30 H 0.18 1.62 8.06 -2.91 -0.02 1.59 16 31 H 0.17 2.41 8.06 -2.91 -0.02 2.39 16 32 H 0.12 4.28 7.01 -2.91 -0.02 4.26 16 33 H 0.10 5.04 8.06 -2.91 -0.02 5.01 16 34 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 35 H 0.12 5.71 5.62 -2.91 -0.02 5.69 16 36 H 0.15 4.31 8.06 -2.91 -0.02 4.29 16 37 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16 38 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.05 0.87 7.23 -2.38 -0.02 0.85 16 41 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 42 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.07 0.74 7.45 -2.39 -0.02 0.73 16 Total: -1.00 -86.04 369.38 6.49 -79.54 By element: Atomic # 1 Polarization: 29.24 SS G_CDS: 0.24 Total: 29.48 kcal Atomic # 6 Polarization: -50.22 SS G_CDS: 6.16 Total: -44.06 kcal Atomic # 7 Polarization: -72.74 SS G_CDS: -1.68 Total: -74.42 kcal Atomic # 8 Polarization: -37.01 SS G_CDS: -0.25 Total: -37.26 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -86.04 6.49 -79.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491019860.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.866 kcal (2) G-P(sol) polarization free energy of solvation -86.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds