Wall clock time and date at job start Fri Apr 10 2020 22:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.46876 * 2 1 4 4 N 1.46494 * 109.47246 * 120.00255 * 2 1 3 5 5 C 1.46505 * 119.99948 * 295.13998 * 4 2 1 6 6 C 1.50703 * 109.46888 * 89.99961 * 5 4 2 7 7 H 1.08002 * 120.00437 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99904 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00181 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 119.99838 * 0.02562 * 8 6 5 11 11 H 1.48495 * 109.47429 * 89.99948 * 10 8 6 12 12 H 1.48498 * 109.46962 * 210.00136 * 10 8 6 13 13 H 1.48505 * 109.47106 * 330.00081 * 10 8 6 14 14 C 1.34778 * 120.00271 * 115.41622 * 4 2 1 15 15 O 1.21743 * 120.00430 * 185.12912 * 14 4 2 16 16 C 1.41810 * 119.99867 * 5.12314 * 14 4 2 17 17 C 1.35424 * 120.00324 * 185.26896 * 16 14 4 18 18 C 1.46154 * 120.00452 * 180.02562 * 17 16 14 19 19 C 1.36267 * 125.17211 * 180.02562 * 18 17 16 20 20 C 1.46161 * 106.05087 * 180.02562 * 19 18 17 21 21 C 1.39749 * 134.15818 * 179.97438 * 20 19 18 22 22 C 1.36633 * 119.70282 * 179.97438 * 21 20 19 23 23 C 1.38827 * 120.43784 * 0.02562 * 22 21 20 24 24 C 1.37857 * 120.75247 * 359.97438 * 23 22 21 25 25 C 1.38956 * 119.86311 * 359.97438 * 24 23 22 26 26 O 1.34793 * 133.17881 * 180.33809 * 25 24 23 27 27 H 1.09000 * 109.47017 * 305.02521 * 1 2 3 28 28 H 1.08993 * 109.47365 * 65.02900 * 1 2 3 29 29 H 1.09003 * 109.47243 * 185.02857 * 1 2 3 30 30 H 1.09002 * 109.46927 * 239.99928 * 2 1 3 31 31 H 1.09002 * 109.46724 * 174.92791 * 3 2 1 32 32 H 1.08998 * 109.47464 * 294.92490 * 3 2 1 33 33 H 1.09002 * 109.47542 * 54.92871 * 3 2 1 34 34 H 1.09001 * 109.47016 * 209.99977 * 5 4 2 35 35 H 1.08989 * 109.47002 * 330.00300 * 5 4 2 36 36 H 0.97000 * 119.99749 * 179.97438 * 9 8 6 37 37 H 1.08006 * 119.99748 * 5.27148 * 16 14 4 38 38 H 1.08006 * 119.99927 * 0.02562 * 17 16 14 39 39 H 1.08003 * 126.97655 * 359.96078 * 19 18 17 40 40 H 1.07997 * 120.14735 * 359.97438 * 21 20 19 41 41 H 1.07998 * 119.77902 * 179.97438 * 22 21 20 42 42 H 1.08006 * 119.62475 * 179.97438 * 23 22 21 43 43 H 1.07995 * 120.06183 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.7544 -0.1311 2.5241 6 6 0.4512 -0.6764 3.0489 7 1 -0.1228 -1.3707 2.4530 8 6 -0.0079 -0.2899 4.2902 9 7 -1.1449 -0.7661 4.7485 10 14 0.9852 0.9103 5.3211 11 1 0.5634 2.2991 5.0076 12 1 0.7525 0.6357 6.7618 13 1 2.4292 0.7502 5.0135 14 6 2.7153 -1.8378 1.0746 15 8 3.0405 -2.4608 2.0687 16 6 3.0697 -2.3193 -0.2113 17 6 3.6756 -3.5236 -0.3402 18 6 4.0414 -4.0196 -1.6655 19 6 4.6519 -5.2117 -1.9165 20 6 4.8201 -5.2822 -3.3666 21 6 5.3667 -6.2277 -4.2385 22 6 5.3707 -5.9861 -5.5833 23 6 4.8362 -4.8084 -6.0878 24 6 4.2923 -3.8631 -5.2445 25 6 4.2758 -4.0868 -3.8732 26 8 3.8192 -3.3698 -2.8271 27 1 -0.3633 0.5898 0.8416 28 1 -0.3634 0.4338 -0.9315 29 1 -0.3634 -1.0237 0.0901 30 1 1.8933 -0.5139 -0.8900 31 1 3.1262 1.4438 0.0909 32 1 1.7527 1.9294 -0.9319 33 1 1.6043 1.9819 0.8411 34 1 2.5626 -0.4065 3.2016 35 1 1.6922 0.9548 2.4550 36 1 -1.4677 -0.4944 5.6219 37 1 2.8565 -1.7255 -1.0880 38 1 3.8885 -4.1175 0.5363 39 1 4.9517 -5.9535 -1.1909 40 1 5.7841 -7.1453 -3.8510 41 1 5.7932 -6.7158 -6.2581 42 1 4.8465 -4.6307 -7.1531 43 1 3.8799 -2.9506 -5.6490 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491436594.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:51:39 Heat of formation + Delta-G solvation = -0.725821 kcal Electronic energy + Delta-G solvation = -24929.158370 eV Core-core repulsion = 21326.830133 eV Total energy + Delta-G solvation = -3602.328237 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.42248 -41.13139 -38.85061 -37.75956 -35.28010 -34.76363 -33.50126 -32.63820 -31.36350 -30.75947 -29.39474 -28.05743 -25.98574 -24.16365 -23.73963 -22.95202 -22.41356 -21.58054 -19.35453 -19.06473 -18.87596 -18.31636 -17.60282 -17.24344 -16.85725 -16.42170 -16.31794 -15.70946 -15.27956 -15.14532 -14.97592 -14.79145 -14.51609 -14.13272 -14.02019 -13.77107 -13.64384 -13.48475 -13.29658 -13.21402 -12.91459 -12.80543 -12.70865 -12.44443 -12.20042 -11.96966 -11.89429 -11.87330 -11.75646 -11.55067 -10.81156 -10.77938 -10.68168 -9.60298 -9.46836 -8.90945 -8.30130 -6.32777 -0.76208 0.34566 0.42319 1.30970 1.35627 1.46078 1.52980 1.57886 2.22829 2.32570 2.46182 2.75837 3.03131 3.24318 3.64046 3.74914 3.86169 3.96806 4.04080 4.15557 4.22802 4.28155 4.32985 4.40722 4.52178 4.56863 4.65210 4.82843 4.83329 4.86980 4.89487 4.98036 5.01811 5.06170 5.11517 5.21237 5.32259 5.34863 5.42407 5.46692 5.51211 5.53428 5.67237 5.73905 6.13517 6.28092 6.64946 6.68577 7.22195 7.35884 8.86734 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.025792 B = 0.002733 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.345849 B =10241.558744 C =10778.500265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.121 3.879 3 C -0.157 4.157 4 N -0.588 5.588 5 C 0.225 3.775 6 C -0.519 4.519 7 H 0.031 0.969 8 C 0.009 3.991 9 N -0.947 5.947 10 Si 0.942 3.058 11 H -0.252 1.252 12 H -0.283 1.283 13 H -0.256 1.256 14 C 0.530 3.470 15 O -0.594 6.594 16 C -0.195 4.195 17 C 0.007 3.993 18 C 0.029 3.971 19 C -0.158 4.158 20 C -0.160 4.160 21 C -0.074 4.074 22 C -0.136 4.136 23 C -0.081 4.081 24 C -0.124 4.124 25 C 0.033 3.967 26 O -0.203 6.203 27 H 0.046 0.954 28 H 0.091 0.909 29 H 0.029 0.971 30 H 0.111 0.889 31 H 0.061 0.939 32 H 0.098 0.902 33 H 0.050 0.950 34 H 0.018 0.982 35 H 0.050 0.950 36 H 0.266 0.734 37 H 0.154 0.846 38 H 0.163 0.837 39 H 0.186 0.814 40 H 0.149 0.851 41 H 0.162 0.838 42 H 0.169 0.831 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.503 -5.087 -25.261 29.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.019 3.981 3 C -0.214 4.214 4 N -0.317 5.317 5 C 0.102 3.898 6 C -0.557 4.557 7 H 0.049 0.951 8 C -0.188 4.188 9 N -0.587 5.587 10 Si 0.765 3.235 11 H -0.177 1.177 12 H -0.209 1.209 13 H -0.180 1.180 14 C 0.322 3.678 15 O -0.479 6.479 16 C -0.215 4.215 17 C -0.013 4.013 18 C -0.018 4.018 19 C -0.177 4.177 20 C -0.160 4.160 21 C -0.092 4.092 22 C -0.154 4.154 23 C -0.099 4.099 24 C -0.142 4.142 25 C -0.014 4.014 26 O -0.106 6.106 27 H 0.065 0.935 28 H 0.110 0.890 29 H 0.048 0.952 30 H 0.128 0.872 31 H 0.080 0.920 32 H 0.117 0.883 33 H 0.069 0.931 34 H 0.036 0.964 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.172 0.828 38 H 0.180 0.820 39 H 0.204 0.796 40 H 0.167 0.833 41 H 0.179 0.821 42 H 0.186 0.814 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 14.390 -5.074 -24.629 28.972 hybrid contribution -0.380 0.257 1.402 1.476 sum 14.010 -4.817 -23.226 27.549 Atomic orbital electron populations 1.22066 0.95060 1.01070 1.02519 1.21536 0.94740 0.94777 0.87036 1.22140 1.01351 0.94334 1.03619 1.48095 1.51869 1.23406 1.08329 1.19312 0.94801 0.94534 0.81115 1.21478 1.05151 1.26602 1.02497 0.95065 1.25807 0.95953 0.98429 0.98654 1.70052 1.22410 1.46414 1.19861 0.85793 0.79943 0.79817 0.77947 1.17664 1.20877 1.18039 1.17562 0.78987 0.81123 0.90116 1.90766 1.57820 1.57588 1.41677 1.22294 1.03264 0.98905 0.97006 1.21739 0.92711 0.95147 0.91724 1.20473 1.03419 0.93315 0.84555 1.23164 1.02262 0.97397 0.94884 1.20219 1.05228 0.97007 0.93580 1.20739 0.97220 0.98219 0.93035 1.21252 1.00597 0.98524 0.94990 1.21472 0.95123 0.92301 1.01011 1.20385 1.04243 1.02836 0.86782 1.20276 0.99659 0.91650 0.89832 1.83986 1.68106 1.44918 1.13563 0.93502 0.89016 0.95218 0.87164 0.92009 0.88329 0.93086 0.96438 0.93219 0.92465 0.82841 0.82011 0.79641 0.83317 0.82060 0.81352 0.83518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.14 8.44 71.98 0.61 -4.53 16 2 C 0.12 3.88 3.15 44.99 0.14 4.02 16 3 C -0.16 -4.09 8.94 71.98 0.64 -3.45 16 4 N -0.59 -25.03 2.39 -812.50 -1.94 -26.97 16 5 C 0.22 11.22 3.78 85.63 0.32 11.54 16 6 C -0.52 -30.85 8.56 25.60 0.22 -30.63 16 7 H 0.03 2.08 7.84 -2.91 -0.02 2.06 16 8 C 0.01 0.54 5.47 84.66 0.46 1.00 16 9 N -0.95 -60.70 13.96 21.45 0.30 -60.40 16 10 Si 0.94 45.19 27.47 68.60 1.88 47.08 16 11 H -0.25 -11.10 7.11 99.48 0.71 -10.39 16 12 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 13 H -0.26 -11.88 6.54 99.48 0.65 -11.23 16 14 C 0.53 22.87 7.43 85.12 0.63 23.50 16 15 O -0.59 -30.86 15.75 -4.49 -0.07 -30.93 16 16 C -0.19 -6.35 8.79 22.50 0.20 -6.16 16 17 C 0.01 0.20 9.56 23.68 0.23 0.43 16 18 C 0.03 0.76 6.93 23.87 0.17 0.92 16 19 C -0.16 -3.47 11.07 23.87 0.26 -3.21 16 20 C -0.16 -3.38 6.38 -20.23 -0.13 -3.51 16 21 C -0.07 -1.10 10.06 22.26 0.22 -0.88 16 22 C -0.14 -1.47 9.98 22.04 0.22 -1.25 16 23 C -0.08 -0.90 10.01 22.32 0.22 -0.67 16 24 C -0.12 -2.04 10.07 22.35 0.23 -1.81 16 25 C 0.03 0.76 7.40 23.06 0.17 0.93 16 26 O -0.20 -5.41 10.15 -13.73 -0.14 -5.55 16 27 H 0.05 1.90 7.28 -2.39 -0.02 1.88 16 28 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.11 2.89 5.19 -2.39 -0.01 2.88 16 31 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.05 1.50 6.77 -2.39 -0.02 1.48 16 34 H 0.02 0.95 6.55 -2.39 -0.02 0.94 16 35 H 0.05 2.27 5.72 -2.39 -0.01 2.25 16 36 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 37 H 0.15 4.20 5.44 -2.91 -0.02 4.18 16 38 H 0.16 4.75 7.47 -2.91 -0.02 4.72 16 39 H 0.19 3.03 8.06 -2.91 -0.02 3.00 16 40 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 41 H 0.16 0.69 8.06 -2.91 -0.02 0.67 16 42 H 0.17 0.67 8.06 -2.91 -0.02 0.65 16 43 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 Total: -1.00 -80.71 359.93 5.82 -74.90 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: 0.96 Total: 15.63 kcal Atomic # 6 Polarization: -18.57 SS G_CDS: 4.82 Total: -13.75 kcal Atomic # 7 Polarization: -85.73 SS G_CDS: -1.64 Total: -87.37 kcal Atomic # 8 Polarization: -36.27 SS G_CDS: -0.21 Total: -36.48 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.88 Total: 47.08 kcal Total: -80.71 5.82 -74.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491436594.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.171 kcal (2) G-P(sol) polarization free energy of solvation -80.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds