Wall clock time and date at job start Fri Apr 10 2020 22:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 H 1.09000 * 109.67673 * 261.34859 * 3 2 1 5 5 C 1.53290 * 109.68504 * 21.86853 * 3 2 1 6 6 O 1.42960 * 109.22523 * 172.02332 * 5 3 2 7 7 C 1.42967 * 114.16570 * 297.42372 * 6 5 3 8 8 C 1.53295 * 109.22357 * 62.57939 * 7 6 5 9 9 N 1.47153 * 109.67722 * 140.79803 * 3 2 1 10 10 C 1.34770 * 120.98397 * 9.76113 * 9 3 2 11 11 O 1.21280 * 120.00323 * 359.97438 * 10 9 3 12 12 C 1.50698 * 119.99875 * 179.97438 * 10 9 3 13 13 C 1.53005 * 109.47418 * 179.97438 * 12 10 9 14 14 H 1.09001 * 109.46885 * 305.00421 * 13 12 10 15 15 C 1.50698 * 109.46946 * 64.99488 * 13 12 10 16 16 H 1.07999 * 120.00140 * 29.58981 * 15 13 12 17 17 C 1.37879 * 120.00044 * 209.58641 * 15 13 12 18 18 N 1.31509 * 119.99882 * 4.94324 * 17 15 13 19 19 Si 1.86799 * 120.00092 * 184.94001 * 17 15 13 20 20 H 1.48504 * 109.47220 * 89.99791 * 19 17 15 21 21 H 1.48498 * 109.47510 * 210.00208 * 19 17 15 22 22 H 1.48509 * 109.47078 * 330.00340 * 19 17 15 23 23 C 1.50701 * 109.47277 * 184.99873 * 13 12 10 24 24 C 1.38231 * 119.99975 * 296.76530 * 23 13 12 25 25 C 1.38235 * 120.00111 * 179.78605 * 24 23 13 26 26 C 1.38236 * 119.99713 * 0.47030 * 25 24 23 27 27 C 1.38240 * 120.00060 * 359.76579 * 26 25 24 28 28 C 1.38230 * 119.99789 * 117.04330 * 23 13 12 29 29 H 4.19068 * 14.98877 * 0.02562 * 4 2 1 30 30 H 1.09004 * 109.51213 * 52.10029 * 5 3 2 31 31 H 1.09002 * 109.55257 * 291.97782 * 5 3 2 32 32 H 1.08997 * 109.51181 * 302.65129 * 7 6 5 33 33 H 1.09003 * 109.50871 * 182.50401 * 7 6 5 34 34 H 1.08997 * 109.68365 * 67.41792 * 8 7 6 35 35 H 1.09000 * 109.67961 * 187.97664 * 8 7 6 36 36 H 1.09002 * 109.47435 * 299.99606 * 12 10 9 37 37 H 1.09003 * 109.47510 * 59.99958 * 12 10 9 38 38 H 0.97006 * 119.99850 * 179.97438 * 18 17 15 39 39 H 1.08003 * 120.00275 * 0.02562 * 24 23 13 40 40 H 1.07996 * 120.00329 * 180.25020 * 25 24 23 41 41 H 1.08000 * 120.00117 * 179.78587 * 26 25 24 42 42 H 1.07998 * 119.99780 * 180.02562 * 27 26 25 43 43 H 1.08001 * 120.00058 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0130 0.1552 1.0147 5 6 3.1630 -1.3386 -0.5376 6 8 4.5802 -1.2616 -0.7088 7 6 5.0021 -0.2862 -1.6651 8 6 4.5793 1.1070 -1.1852 9 7 3.1410 1.0746 -0.8758 10 6 2.3020 2.0014 -1.3792 11 8 1.1197 1.9578 -1.1126 12 6 2.8331 3.0920 -2.2735 13 6 1.6823 4.0035 -2.7047 14 1 0.8985 3.4045 -3.1682 15 6 1.1246 4.7135 -1.4981 16 1 1.7659 4.9355 -0.6579 17 6 -0.2043 5.0797 -1.4667 18 7 -1.0074 4.7245 -2.4457 19 14 -0.8639 6.0801 -0.0338 20 1 -0.7289 7.5276 -0.3369 21 1 -2.2957 5.7510 0.1823 22 1 -0.0912 5.7571 1.1927 23 6 2.1903 5.0194 -3.6952 24 6 3.1460 5.9413 -3.3110 25 6 3.6152 6.8704 -4.2208 26 6 3.1215 6.8838 -5.5119 27 6 2.1621 5.9650 -5.8946 28 6 1.6962 5.0331 -4.9861 29 1 -1.0500 -0.0005 -0.0001 30 1 2.6915 -1.5522 -1.4969 31 1 2.9243 -2.1324 0.1702 32 1 4.5373 -0.4960 -2.6284 33 1 6.0866 -0.3224 -1.7678 34 1 5.1415 1.3732 -0.2900 35 1 4.7696 1.8390 -1.9700 36 1 3.5765 3.6766 -1.7315 37 1 3.2935 2.6467 -3.1555 38 1 -1.9425 4.9819 -2.4234 39 1 3.5291 5.9332 -2.3013 40 1 4.3649 7.5880 -3.9218 41 1 3.4855 7.6118 -6.2217 42 1 1.7768 5.9752 -6.9035 43 1 0.9465 4.3155 -5.2850 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491568725.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:51:46 Heat of formation + Delta-G solvation = 2.076769 kcal Electronic energy + Delta-G solvation = -26302.998248 eV Core-core repulsion = 22700.791541 eV Total energy + Delta-G solvation = -3602.206708 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.43537 -39.97764 -39.09693 -36.13410 -35.58356 -34.65725 -33.28743 -31.50910 -31.48365 -30.40917 -28.79885 -27.35335 -25.50235 -24.49371 -23.21362 -22.89767 -21.56640 -20.49617 -19.07612 -18.45474 -17.90409 -17.41534 -17.18073 -16.85615 -16.56255 -16.40052 -16.00648 -15.93747 -15.53080 -15.44118 -14.83948 -14.59817 -14.26066 -13.99781 -13.86109 -13.59861 -13.45886 -13.25310 -13.08142 -12.85851 -12.56541 -12.52619 -12.43021 -12.07958 -11.87349 -11.82024 -11.67896 -11.28939 -11.27170 -11.19305 -10.95781 -10.48525 -9.64912 -9.54428 -9.43016 -9.19417 -8.04556 -6.06661 0.77406 0.83212 1.33522 1.35218 1.42331 1.58102 1.89347 2.02542 2.43889 2.44254 2.82219 3.17684 3.34162 3.42089 3.74173 3.94047 4.03537 4.18037 4.23273 4.27219 4.32005 4.36000 4.39620 4.53550 4.57190 4.61615 4.69428 4.72773 4.84295 4.92110 4.95840 4.98860 5.04590 5.20943 5.37158 5.50319 5.55419 5.66807 5.77358 5.83517 5.95404 6.04757 6.17266 6.40404 6.45901 6.52106 6.86652 7.00306 7.53131 7.56162 9.04765 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.011596 B = 0.005325 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.092991 B = 5257.181336 C = 6922.485065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.200 4.200 3 C 0.225 3.775 4 H 0.102 0.898 5 C 0.071 3.929 6 O -0.382 6.382 7 C 0.045 3.955 8 C 0.070 3.930 9 N -0.630 5.630 10 C 0.504 3.496 11 O -0.520 6.520 12 C -0.110 4.110 13 C 0.085 3.915 14 H 0.022 0.978 15 C -0.481 4.481 16 H 0.043 0.957 17 C 0.024 3.976 18 N -0.915 5.915 19 Si 0.932 3.068 20 H -0.274 1.274 21 H -0.292 1.292 22 H -0.275 1.275 23 C -0.047 4.047 24 C -0.126 4.126 25 C -0.126 4.126 26 C -0.147 4.147 27 C -0.128 4.128 28 C -0.143 4.143 29 H 0.222 0.778 30 H 0.051 0.949 31 H 0.129 0.871 32 H 0.055 0.945 33 H 0.142 0.858 34 H 0.090 0.910 35 H 0.111 0.889 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.252 0.748 39 H 0.116 0.884 40 H 0.141 0.859 41 H 0.144 0.856 42 H 0.131 0.869 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.004 -7.195 -1.134 16.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.200 4.200 3 C 0.122 3.878 4 H 0.120 0.880 5 C -0.006 4.006 6 O -0.300 6.300 7 C -0.032 4.032 8 C -0.051 4.051 9 N -0.368 5.368 10 C 0.293 3.707 11 O -0.394 6.394 12 C -0.150 4.150 13 C 0.065 3.935 14 H 0.041 0.959 15 C -0.519 4.519 16 H 0.061 0.939 17 C -0.174 4.174 18 N -0.554 5.554 19 Si 0.759 3.241 20 H -0.200 1.200 21 H -0.218 1.218 22 H -0.200 1.200 23 C -0.047 4.047 24 C -0.144 4.144 25 C -0.143 4.143 26 C -0.164 4.164 27 C -0.146 4.146 28 C -0.162 4.162 29 H 0.238 0.762 30 H 0.069 0.931 31 H 0.146 0.854 32 H 0.073 0.927 33 H 0.159 0.841 34 H 0.109 0.891 35 H 0.129 0.871 36 H 0.113 0.887 37 H 0.107 0.893 38 H 0.061 0.939 39 H 0.134 0.866 40 H 0.159 0.841 41 H 0.161 0.839 42 H 0.149 0.851 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 14.316 -7.301 -0.950 16.098 hybrid contribution -1.762 0.802 0.725 2.067 sum 12.554 -6.500 -0.225 14.138 Atomic orbital electron populations 1.25125 0.96522 0.99858 0.98890 1.22489 0.94377 1.01076 1.02074 1.18719 0.84025 0.89493 0.95537 0.88040 1.22875 0.81501 0.94683 1.01582 1.87956 1.21071 1.58560 1.62376 1.23235 1.02714 0.86101 0.91164 1.22715 0.78910 1.00037 1.03475 1.48544 1.09503 1.28088 1.50689 1.21195 0.86280 0.82418 0.80796 1.90872 1.17683 1.72372 1.58445 1.21672 0.99924 0.95161 0.98204 1.17586 0.91928 0.91089 0.92849 0.95937 1.20920 0.94124 1.35888 1.00954 0.93920 1.25438 0.97611 0.96947 0.97423 1.70050 1.04645 1.46747 1.34003 0.85966 0.77390 0.79631 0.81077 1.20011 1.21818 1.20000 1.20557 0.93279 0.97489 0.93408 1.21035 0.98042 0.95927 0.99375 1.21375 1.00597 0.98637 0.93722 1.21269 0.98412 0.99803 0.96964 1.21279 0.98046 0.95778 0.99525 1.21089 1.00289 1.00448 0.94358 0.76170 0.93112 0.85356 0.92693 0.84062 0.89136 0.87117 0.88744 0.89340 0.93865 0.86617 0.84078 0.83867 0.85131 0.89030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -7.07 17.79 74.32 1.32 -5.75 16 2 C -0.20 -7.36 10.08 31.13 0.31 -7.05 16 3 C 0.22 6.64 3.52 43.16 0.15 6.80 16 4 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 5 C 0.07 1.62 6.25 72.08 0.45 2.07 16 6 O -0.38 -7.99 10.74 -148.98 -1.60 -9.59 16 7 C 0.04 0.75 6.98 72.08 0.50 1.26 16 8 C 0.07 1.43 6.54 86.35 0.56 2.00 16 9 N -0.63 -19.58 3.02 -803.61 -2.43 -22.00 16 10 C 0.50 20.76 7.36 87.66 0.64 21.40 16 11 O -0.52 -26.86 11.07 -3.03 -0.03 -26.89 16 12 C -0.11 -4.21 3.32 29.85 0.10 -4.12 16 13 C 0.08 4.15 1.68 -12.28 -0.02 4.12 16 14 H 0.02 1.31 6.95 -2.39 -0.02 1.30 16 15 C -0.48 -26.52 6.38 25.60 0.16 -26.35 16 16 H 0.04 2.35 7.82 -2.91 -0.02 2.32 16 17 C 0.02 1.43 5.45 84.66 0.46 1.89 16 18 N -0.91 -56.38 12.85 21.45 0.28 -56.11 16 19 Si 0.93 46.96 29.54 68.60 2.03 48.98 16 20 H -0.27 -13.30 7.11 99.48 0.71 -12.60 16 21 H -0.29 -14.76 7.11 99.48 0.71 -14.06 16 22 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 23 C -0.05 -2.06 4.77 -19.87 -0.09 -2.15 16 24 C -0.13 -4.80 8.86 22.27 0.20 -4.60 16 25 C -0.13 -3.97 10.05 22.27 0.22 -3.74 16 26 C -0.15 -4.45 10.05 22.27 0.22 -4.23 16 27 C -0.13 -4.44 10.05 22.27 0.22 -4.22 16 28 C -0.14 -6.11 9.67 22.27 0.22 -5.90 16 29 H 0.22 7.38 7.80 -4.42 -0.03 7.35 16 30 H 0.05 1.25 8.13 -2.39 -0.02 1.23 16 31 H 0.13 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.14 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.11 2.01 6.05 -2.39 -0.01 1.99 16 36 H 0.09 3.24 7.63 -2.39 -0.02 3.23 16 37 H 0.09 2.90 7.66 -2.39 -0.02 2.88 16 38 H 0.25 15.09 8.31 -92.70 -0.77 14.32 16 39 H 0.12 4.25 7.75 -2.91 -0.02 4.23 16 40 H 0.14 3.45 8.06 -2.91 -0.02 3.43 16 41 H 0.14 3.27 8.06 -2.91 -0.02 3.25 16 42 H 0.13 3.77 8.06 -2.91 -0.02 3.75 16 43 H 0.09 4.17 7.95 -2.91 -0.02 4.15 16 Total: -1.00 -76.27 358.28 4.88 -71.39 By element: Atomic # 1 Polarization: 21.79 SS G_CDS: 0.99 Total: 22.79 kcal Atomic # 6 Polarization: -34.21 SS G_CDS: 5.64 Total: -28.56 kcal Atomic # 7 Polarization: -75.96 SS G_CDS: -2.15 Total: -78.11 kcal Atomic # 8 Polarization: -34.85 SS G_CDS: -1.63 Total: -36.48 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.98 kcal Total: -76.27 4.88 -71.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491568725.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.465 kcal (2) G-P(sol) polarization free energy of solvation -76.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds