Wall clock time and date at job start Fri Apr 10 2020 22:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 H 1.09002 * 109.71011 * 79.48624 * 3 2 1 5 5 C 1.52876 * 109.62106 * 319.18259 * 3 2 1 6 6 O 1.42963 * 109.29769 * 188.11807 * 5 3 2 7 7 C 1.42959 * 114.17043 * 62.44658 * 6 5 3 8 8 C 1.53296 * 109.22261 * 297.42244 * 7 6 5 9 9 N 1.47148 * 108.38380 * 52.29940 * 8 7 6 10 10 C 1.34781 * 120.97958 * 129.44658 * 9 8 7 11 11 O 1.21285 * 119.99771 * 180.02562 * 10 9 8 12 12 C 1.50693 * 119.99991 * 359.97438 * 10 9 8 13 13 C 1.53003 * 109.47044 * 180.02562 * 12 10 9 14 14 H 1.09006 * 109.47095 * 305.94996 * 13 12 10 15 15 C 1.50699 * 109.47349 * 65.95151 * 13 12 10 16 16 H 1.08007 * 119.99593 * 28.08863 * 15 13 12 17 17 C 1.37870 * 120.00327 * 208.08866 * 15 13 12 18 18 N 1.31519 * 120.00080 * 353.51181 * 17 15 13 19 19 Si 1.86803 * 120.00171 * 173.51345 * 17 15 13 20 20 H 1.48495 * 109.47112 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.46951 * 239.99990 * 19 17 15 22 22 H 1.48499 * 109.46974 * 120.00265 * 19 17 15 23 23 C 1.50699 * 109.47167 * 185.95318 * 13 12 10 24 24 C 1.38232 * 120.00167 * 294.77368 * 23 13 12 25 25 C 1.38238 * 120.00161 * 179.76772 * 24 23 13 26 26 C 1.38231 * 119.99757 * 0.50550 * 25 24 23 27 27 C 1.38238 * 120.00278 * 359.74580 * 26 25 24 28 28 C 1.38235 * 119.99814 * 0.02562 * 27 26 25 29 29 H 4.19114 * 14.98086 * 0.02562 * 4 2 1 30 30 H 1.08996 * 109.58396 * 68.10209 * 5 3 2 31 31 H 1.08996 * 109.40738 * 308.02170 * 5 3 2 32 32 H 1.08999 * 109.51117 * 177.49349 * 7 6 5 33 33 H 1.09002 * 109.51071 * 57.34525 * 7 6 5 34 34 H 1.09004 * 109.67861 * 292.57556 * 8 7 6 35 35 H 1.08996 * 109.68133 * 172.02244 * 8 7 6 36 36 H 1.08998 * 109.47382 * 60.00680 * 12 10 9 37 37 H 1.08997 * 109.47256 * 300.00009 * 12 10 9 38 38 H 0.97000 * 119.99694 * 1.67844 * 18 17 15 39 39 H 1.08002 * 119.99730 * 359.97438 * 24 23 13 40 40 H 1.08003 * 119.99894 * 180.23066 * 25 24 23 41 41 H 1.07998 * 120.00278 * 179.72938 * 26 25 24 42 42 H 1.07998 * 120.00004 * 179.97438 * 27 26 25 43 43 H 1.07997 * 120.00221 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0137 -0.1864 -1.0089 5 6 3.1598 -1.0889 0.9412 6 8 4.5766 -0.9610 1.0831 7 6 4.9971 0.2725 1.6708 8 6 4.5782 1.4334 0.7615 9 7 3.1410 1.3027 0.4744 10 6 2.3018 2.3433 0.6461 11 8 1.1201 2.2157 0.4043 12 6 2.8315 3.6650 1.1395 13 6 1.6808 4.6677 1.2465 14 1 1.1573 4.7233 0.2920 15 6 0.7223 4.2197 2.3197 16 1 1.0794 3.6283 3.1499 17 6 -0.6102 4.5649 2.2418 18 7 -1.0222 5.3891 1.3035 19 14 -1.8305 3.8618 3.4691 20 1 -1.1195 2.9660 4.4163 21 1 -2.8716 3.0892 2.7447 22 1 -2.4706 4.9707 4.2213 23 6 2.2295 6.0264 1.5984 24 6 2.8423 6.2290 2.8208 25 6 3.3499 7.4741 3.1416 26 6 3.2355 8.5193 2.2442 27 6 2.6180 8.3181 1.0238 28 6 2.1146 7.0717 0.7011 29 1 -1.0500 0.0004 -0.0002 30 1 2.9222 -2.0696 0.5292 31 1 2.6849 -0.9788 1.9161 32 1 6.0813 0.2711 1.7836 33 1 4.5288 0.3883 2.6483 34 1 5.1438 1.3930 -0.1694 35 1 4.7672 2.3811 1.2656 36 1 3.5778 4.0414 0.4398 37 1 3.2879 3.5303 2.1200 38 1 -0.3930 5.7351 0.6514 39 1 2.9274 5.4136 3.5239 40 1 3.8320 7.6314 4.0951 41 1 3.6281 9.4932 2.4965 42 1 2.5283 9.1348 0.3229 43 1 1.6319 6.9146 -0.2521 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491568727.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:51:52 Heat of formation + Delta-G solvation = -2.594533 kcal Electronic energy + Delta-G solvation = -26412.656113 eV Core-core repulsion = 22810.246842 eV Total energy + Delta-G solvation = -3602.409270 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.53531 -40.12730 -39.18460 -36.36289 -35.72131 -34.75781 -33.16412 -31.61982 -31.53955 -30.53029 -28.81801 -26.96457 -25.52545 -24.67382 -23.27539 -22.98086 -21.76099 -20.72799 -19.18104 -18.74305 -17.91532 -17.49513 -17.32526 -16.95497 -16.53893 -16.19697 -16.02937 -15.91579 -15.70354 -15.52170 -14.96398 -14.71952 -14.36578 -14.11863 -13.96113 -13.80863 -13.55969 -13.18094 -13.15733 -12.73759 -12.65477 -12.50979 -12.15832 -12.06639 -11.99874 -11.89326 -11.70674 -11.49618 -11.32688 -11.25140 -10.65693 -10.44257 -9.74123 -9.64913 -9.50539 -9.27660 -8.47104 -6.12134 0.66841 0.72575 1.44349 1.51266 1.55224 1.67306 1.80724 1.95829 2.38201 2.57774 2.77506 3.09451 3.34121 3.39388 3.68782 3.87698 3.97651 4.10442 4.11269 4.19708 4.26015 4.27419 4.27990 4.41513 4.45073 4.53342 4.58669 4.65740 4.77041 4.82770 4.85545 4.91269 4.99312 5.08654 5.21185 5.38466 5.40890 5.49174 5.73818 5.81164 5.92871 6.00054 6.22281 6.29099 6.36877 6.43345 6.76706 6.82879 7.42043 7.62733 8.93674 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.011760 B = 0.005380 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.410224 B = 5202.781977 C = 6705.730213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.202 4.202 3 C 0.226 3.774 4 H 0.108 0.892 5 C 0.069 3.931 6 O -0.380 6.380 7 C 0.044 3.956 8 C 0.070 3.930 9 N -0.628 5.628 10 C 0.507 3.493 11 O -0.526 6.526 12 C -0.105 4.105 13 C 0.077 3.923 14 H 0.003 0.997 15 C -0.551 4.551 16 H 0.035 0.965 17 C -0.023 4.023 18 N -0.942 5.942 19 Si 1.101 2.899 20 H -0.276 1.276 21 H -0.291 1.291 22 H -0.282 1.282 23 C -0.055 4.055 24 C -0.122 4.122 25 C -0.123 4.123 26 C -0.144 4.144 27 C -0.125 4.125 28 C -0.152 4.152 29 H 0.222 0.778 30 H 0.131 0.869 31 H 0.047 0.953 32 H 0.143 0.857 33 H 0.051 0.949 34 H 0.096 0.904 35 H 0.108 0.892 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.259 0.741 39 H 0.113 0.887 40 H 0.143 0.857 41 H 0.147 0.853 42 H 0.134 0.866 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.872 -6.575 0.691 17.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.202 4.202 3 C 0.124 3.876 4 H 0.125 0.875 5 C -0.008 4.008 6 O -0.298 6.298 7 C -0.033 4.033 8 C -0.051 4.051 9 N -0.366 5.366 10 C 0.296 3.704 11 O -0.400 6.400 12 C -0.145 4.145 13 C 0.057 3.943 14 H 0.022 0.978 15 C -0.589 4.589 16 H 0.053 0.947 17 C -0.222 4.222 18 N -0.580 5.580 19 Si 0.927 3.073 20 H -0.201 1.201 21 H -0.217 1.217 22 H -0.209 1.209 23 C -0.056 4.056 24 C -0.140 4.140 25 C -0.141 4.141 26 C -0.162 4.162 27 C -0.143 4.143 28 C -0.171 4.171 29 H 0.238 0.762 30 H 0.149 0.851 31 H 0.065 0.935 32 H 0.161 0.839 33 H 0.070 0.930 34 H 0.114 0.886 35 H 0.126 0.874 36 H 0.108 0.892 37 H 0.112 0.888 38 H 0.069 0.931 39 H 0.131 0.869 40 H 0.161 0.839 41 H 0.164 0.836 42 H 0.152 0.848 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 13.790 -6.757 0.960 15.387 hybrid contribution 0.405 0.309 -0.711 0.875 sum 14.195 -6.449 0.249 15.593 Atomic orbital electron populations 1.25148 0.96549 0.99891 0.98553 1.22482 0.94381 1.00889 1.02492 1.18658 0.84018 0.84876 1.00097 0.87492 1.22815 0.81548 0.98546 0.97929 1.87957 1.21061 1.38026 1.82736 1.23229 1.02795 0.82512 0.94754 1.22729 0.78870 1.01633 1.01908 1.48518 1.09528 1.09918 1.68639 1.21123 0.86131 0.86139 0.77054 1.90849 1.17548 1.82383 1.49220 1.21578 0.99072 0.91911 1.01918 1.17673 0.92151 0.88427 0.96011 0.97827 1.21739 0.94655 1.34255 1.08294 0.94677 1.26645 0.99866 0.94852 1.00794 1.70791 1.39259 1.30881 1.17089 0.83130 0.74345 0.75734 0.74103 1.20124 1.21718 1.20860 1.20610 0.93734 0.97015 0.94240 1.20989 0.99158 0.97973 0.95841 1.21403 0.99955 0.92578 1.00180 1.21309 1.01096 0.99807 0.93959 1.21291 0.98630 0.96268 0.98097 1.21110 1.01983 0.94568 0.99414 0.76152 0.85114 0.93474 0.83913 0.93041 0.88629 0.87358 0.89250 0.88797 0.93062 0.86867 0.83890 0.83557 0.84811 0.88870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.96 17.79 74.32 1.32 -5.63 16 2 C -0.20 -7.39 10.07 31.12 0.31 -7.07 16 3 C 0.23 6.57 3.51 43.02 0.15 6.72 16 4 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 5 C 0.07 1.60 6.23 71.94 0.45 2.05 16 6 O -0.38 -8.01 10.74 -148.98 -1.60 -9.61 16 7 C 0.04 0.76 6.98 72.08 0.50 1.27 16 8 C 0.07 1.42 6.54 86.36 0.57 1.99 16 9 N -0.63 -19.36 3.03 -804.40 -2.43 -21.80 16 10 C 0.51 20.80 7.36 87.65 0.65 21.44 16 11 O -0.53 -26.97 11.11 -3.05 -0.03 -27.01 16 12 C -0.10 -4.06 3.32 29.85 0.10 -3.96 16 13 C 0.08 3.77 1.26 -12.29 -0.02 3.75 16 14 H 0.00 0.20 6.39 -2.38 -0.02 0.19 16 15 C -0.55 -30.66 6.36 25.60 0.16 -30.50 16 16 H 0.03 1.96 7.82 -2.91 -0.02 1.94 16 17 C -0.02 -1.36 5.45 84.65 0.46 -0.90 16 18 N -0.94 -60.00 13.62 21.45 0.29 -59.71 16 19 Si 1.10 54.58 29.91 68.60 2.05 56.64 16 20 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 21 H -0.29 -14.40 7.11 99.48 0.71 -13.70 16 22 H -0.28 -13.47 7.11 99.48 0.71 -12.77 16 23 C -0.06 -2.46 4.66 -19.87 -0.09 -2.55 16 24 C -0.12 -4.74 8.89 22.27 0.20 -4.54 16 25 C -0.12 -3.95 10.05 22.27 0.22 -3.73 16 26 C -0.14 -4.38 10.05 22.27 0.22 -4.16 16 27 C -0.12 -4.31 10.05 22.27 0.22 -4.08 16 28 C -0.15 -6.44 9.42 22.27 0.21 -6.23 16 29 H 0.22 7.41 7.80 -4.42 -0.03 7.37 16 30 H 0.13 2.37 8.14 -2.39 -0.02 2.35 16 31 H 0.05 1.22 8.12 -2.39 -0.02 1.20 16 32 H 0.14 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.05 0.98 8.14 -2.39 -0.02 0.97 16 34 H 0.10 1.58 8.14 -2.38 -0.02 1.56 16 35 H 0.11 1.99 6.05 -2.39 -0.01 1.98 16 36 H 0.09 2.97 8.01 -2.39 -0.02 2.95 16 37 H 0.09 3.29 7.45 -2.39 -0.02 3.27 16 38 H 0.26 16.60 6.42 -92.71 -0.60 16.01 16 39 H 0.11 4.33 7.83 -2.91 -0.02 4.31 16 40 H 0.14 3.55 8.06 -2.91 -0.02 3.52 16 41 H 0.15 3.32 8.06 -2.91 -0.02 3.30 16 42 H 0.13 3.81 8.06 -2.91 -0.02 3.79 16 43 H 0.09 4.11 7.95 -2.91 -0.02 4.08 16 Total: -1.00 -78.29 356.46 5.09 -73.20 By element: Atomic # 1 Polarization: 23.25 SS G_CDS: 1.17 Total: 24.42 kcal Atomic # 6 Polarization: -41.78 SS G_CDS: 5.64 Total: -36.13 kcal Atomic # 7 Polarization: -79.36 SS G_CDS: -2.14 Total: -81.51 kcal Atomic # 8 Polarization: -34.99 SS G_CDS: -1.63 Total: -36.62 kcal Atomic # 14 Polarization: 54.58 SS G_CDS: 2.05 Total: 56.64 kcal Total: -78.29 5.09 -73.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491568727.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.607 kcal (2) G-P(sol) polarization free energy of solvation -78.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds