Wall clock time and date at job start Fri Apr 10 2020 22:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 H 1.09001 * 109.46903 * 255.14361 * 3 2 1 5 5 C 1.52993 * 109.47291 * 15.13762 * 3 2 1 6 6 C 1.53003 * 109.47417 * 185.00239 * 5 3 2 7 7 C 1.52998 * 109.47169 * 180.02562 * 6 5 3 8 8 N 1.46499 * 109.46918 * 135.14124 * 3 2 1 9 9 C 1.34776 * 119.99958 * 85.00193 * 8 3 2 10 10 O 1.21721 * 120.00319 * 359.97438 * 9 8 3 11 11 C 1.46259 * 120.00149 * 179.97438 * 9 8 3 12 12 C 1.35014 * 120.00442 * 179.97438 * 11 9 8 13 13 C 1.46960 * 120.00301 * 179.97438 * 12 11 9 14 14 C 1.40022 * 120.09800 * 359.72699 * 13 12 11 15 15 C 1.37597 * 119.89519 * 179.69130 * 14 13 12 16 16 C 1.39176 * 120.10206 * 0.60533 * 15 14 13 17 17 O 1.35575 * 119.89990 * 179.69443 * 16 15 14 18 18 C 1.34775 * 116.99764 * 174.42493 * 17 16 15 19 19 H 1.08000 * 120.00627 * 5.05292 * 18 17 16 20 20 C 1.38725 * 120.00006 * 185.05409 * 18 17 16 21 21 N 1.31510 * 119.99403 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00140 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47196 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46745 * 120.00134 * 22 20 18 25 25 H 1.48499 * 109.47170 * 240.00000 * 22 20 18 26 26 C 1.39177 * 120.20286 * 359.67511 * 16 15 14 27 27 C 1.37604 * 120.09908 * 0.02562 * 26 16 15 28 28 H 4.18741 * 15.04007 * 359.97438 * 4 2 1 29 29 H 1.09003 * 109.47674 * 305.00386 * 5 3 2 30 30 H 1.08999 * 109.46900 * 65.00188 * 5 3 2 31 31 H 1.09003 * 109.46564 * 300.00183 * 6 5 3 32 32 H 1.08999 * 109.47127 * 60.00088 * 6 5 3 33 33 H 1.08999 * 109.47208 * 59.99913 * 7 6 5 34 34 H 1.09005 * 109.46743 * 179.97438 * 7 6 5 35 35 H 1.08993 * 109.47344 * 299.99489 * 7 6 5 36 36 H 0.96989 * 119.99716 * 264.99381 * 8 3 2 37 37 H 1.07999 * 119.99169 * 359.97438 * 11 9 8 38 38 H 1.08004 * 119.99923 * 0.02562 * 12 11 9 39 39 H 1.08001 * 120.05073 * 359.97438 * 14 13 12 40 40 H 1.07999 * 119.94879 * 180.27723 * 15 14 13 41 41 H 0.97005 * 119.99737 * 180.02562 * 21 20 18 42 42 H 1.08000 * 119.95269 * 180.02562 * 26 16 15 43 43 H 1.08003 * 120.04932 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0092 0.2643 0.9933 5 6 3.1567 -1.3915 -0.3767 6 6 4.6815 -1.4254 -0.2557 7 6 5.1922 -2.8175 -0.6331 8 7 3.1339 0.9800 -0.9743 9 6 3.2620 2.2746 -0.6221 10 8 2.9720 2.6302 0.5053 11 6 3.7496 3.2522 -1.5946 12 6 3.8775 4.5492 -1.2420 13 6 4.3680 5.5314 -2.2190 14 6 4.7086 5.1234 -3.5144 15 6 5.1614 6.0476 -4.4277 16 6 5.2928 7.3839 -4.0618 17 8 5.7452 8.2900 -4.9632 18 6 5.7407 9.5837 -4.5852 19 1 5.4648 9.8505 -3.5757 20 6 6.0905 10.5727 -5.4929 21 7 6.4260 10.2479 -6.7223 22 14 6.0836 12.3658 -4.9693 23 1 5.6718 12.4643 -3.5460 24 1 7.4463 12.9336 -5.1303 25 1 5.1279 13.1249 -5.8153 26 6 4.9610 7.7931 -2.7736 27 6 4.5016 6.8769 -1.8554 28 1 -1.0500 0.0004 -0.0004 29 1 2.7224 -2.1320 0.2951 30 1 2.8685 -1.6188 -1.4030 31 1 5.1158 -0.6850 -0.9276 32 1 4.9698 -1.1982 0.7706 33 1 4.9040 -3.0443 -1.6595 34 1 6.2786 -2.8415 -0.5473 35 1 4.7580 -3.5581 0.0384 36 1 3.3647 0.6966 -1.8727 37 1 4.0073 2.9365 -2.5947 38 1 3.6202 4.8648 -0.2417 39 1 4.6118 4.0856 -3.7976 40 1 5.4201 5.7346 -5.4284 41 1 6.6709 10.9394 -7.3570 42 1 5.0642 8.8312 -2.4942 43 1 4.2439 7.1954 -0.8561 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491786247.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:52:14 Heat of formation + Delta-G solvation = -2.840091 kcal Electronic energy + Delta-G solvation = -23533.073053 eV Core-core repulsion = 19930.653134 eV Total energy + Delta-G solvation = -3602.419919 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.00413 -40.71765 -38.57441 -37.77073 -34.74452 -34.51316 -34.03661 -33.47517 -31.96779 -30.34320 -29.25768 -27.50457 -25.51679 -24.35242 -23.68107 -22.25464 -22.01195 -20.72022 -19.80863 -19.28550 -18.80739 -18.34051 -17.26326 -16.50531 -16.38828 -16.19139 -16.04542 -15.66423 -15.60977 -15.38641 -14.91611 -14.79136 -14.67094 -14.54592 -14.10586 -13.60952 -13.45503 -13.32154 -13.15491 -12.85302 -12.73549 -12.57747 -12.54087 -12.20756 -12.10784 -11.97846 -11.63382 -11.53790 -11.21286 -11.13090 -11.08844 -10.92229 -10.60144 -10.32037 -9.89242 -8.68766 -8.52650 -6.18567 -0.25602 0.58565 1.12067 1.35767 1.44665 1.53626 1.56261 1.84376 2.14887 2.34607 2.54101 2.85931 3.17537 3.37128 3.42358 3.79757 3.92419 3.95112 4.04061 4.08629 4.19718 4.29627 4.34733 4.45697 4.49877 4.65194 4.66773 4.80380 4.89275 4.94535 5.00007 5.02929 5.11495 5.19469 5.26706 5.27746 5.29403 5.33716 5.46608 5.48655 5.58662 5.63843 5.80974 5.97322 6.10387 6.56061 6.63538 6.91908 7.25125 7.69114 8.69603 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.026381 B = 0.001978 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.129310 B =14155.407319 C =14680.657392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.234 4.234 3 C 0.253 3.747 4 H 0.090 0.910 5 C -0.109 4.109 6 C -0.125 4.125 7 C -0.151 4.151 8 N -0.706 5.706 9 C 0.553 3.447 10 O -0.591 6.591 11 C -0.246 4.246 12 C 0.017 3.983 13 C -0.171 4.171 14 C -0.037 4.037 15 C -0.207 4.207 16 C 0.130 3.870 17 O -0.219 6.219 18 C -0.416 4.416 19 H 0.106 0.894 20 C -0.019 4.019 21 N -0.913 5.913 22 Si 1.019 2.981 23 H -0.251 1.251 24 H -0.268 1.268 25 H -0.268 1.268 26 C -0.249 4.249 27 C -0.041 4.041 28 H 0.244 0.756 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.418 0.582 37 H 0.154 0.846 38 H 0.123 0.877 39 H 0.161 0.839 40 H 0.123 0.877 41 H 0.275 0.725 42 H 0.124 0.876 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.541 -22.654 11.163 26.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.235 4.235 3 C 0.149 3.851 4 H 0.108 0.892 5 C -0.146 4.146 6 C -0.163 4.163 7 C -0.208 4.208 8 N -0.358 5.358 9 C 0.344 3.656 10 O -0.474 6.474 11 C -0.266 4.266 12 C -0.003 4.003 13 C -0.171 4.171 14 C -0.054 4.054 15 C -0.226 4.226 16 C 0.078 3.922 17 O -0.124 6.124 18 C -0.492 4.492 19 H 0.123 0.877 20 C -0.218 4.218 21 N -0.550 5.550 22 Si 0.838 3.162 23 H -0.174 1.174 24 H -0.193 1.193 25 H -0.193 1.193 26 C -0.268 4.268 27 C -0.059 4.059 28 H 0.260 0.740 29 H 0.107 0.893 30 H 0.103 0.897 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.256 0.744 37 H 0.171 0.829 38 H 0.141 0.859 39 H 0.178 0.822 40 H 0.141 0.859 41 H 0.084 0.916 42 H 0.142 0.858 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -6.552 -22.366 11.508 25.993 hybrid contribution -0.007 1.055 -0.440 1.143 sum -6.559 -21.311 11.069 24.894 Atomic orbital electron populations 1.25772 0.96910 0.98782 0.98774 1.23980 0.95634 1.01858 1.02039 1.17864 0.82860 0.90260 0.94132 0.89185 1.21816 0.96393 0.92636 1.03802 1.21539 0.94132 0.98542 1.02050 1.21749 1.01105 0.96022 1.01923 1.45804 1.66544 1.06794 1.16628 1.18604 0.76510 0.83165 0.87289 1.90784 1.52804 1.80360 1.23429 1.22745 1.09821 0.93147 1.00892 1.22169 0.88790 0.92138 0.97201 1.18768 1.10138 0.93324 0.94912 1.21289 0.93564 0.99425 0.91156 1.20428 1.10158 0.90357 1.01635 1.20195 0.91359 0.90988 0.89679 1.83885 1.71979 1.17084 1.39491 1.21934 1.48518 0.79282 0.99431 0.87719 1.26615 0.95484 1.05062 0.94643 1.70155 1.43545 1.36070 1.05253 0.84523 0.78710 0.73750 0.79225 1.17433 1.19289 1.19327 1.21199 1.10410 1.01249 0.93975 1.21316 0.93845 0.91903 0.98789 0.73981 0.89293 0.89671 0.91536 0.92312 0.92046 0.92551 0.92329 0.74422 0.82856 0.85867 0.82155 0.85857 0.91591 0.85806 0.83883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.25 19.25 74.32 1.43 -1.82 16 2 C -0.23 -4.72 12.84 31.12 0.40 -4.32 16 3 C 0.25 4.41 2.41 43.18 0.10 4.51 16 4 H 0.09 1.90 7.58 -2.39 -0.02 1.89 16 5 C -0.11 -1.15 4.71 30.59 0.14 -1.00 16 6 C -0.13 -1.29 5.82 30.59 0.18 -1.11 16 7 C -0.15 -1.26 9.91 71.98 0.71 -0.55 16 8 N -0.71 -12.33 4.49 -455.62 -2.05 -14.37 16 9 C 0.55 13.69 7.68 86.33 0.66 14.36 16 10 O -0.59 -19.59 15.89 -4.42 -0.07 -19.66 16 11 C -0.25 -5.56 9.41 23.61 0.22 -5.33 16 12 C 0.02 0.45 9.45 23.81 0.23 0.68 16 13 C -0.17 -5.28 5.87 -20.13 -0.12 -5.40 16 14 C -0.04 -1.13 9.40 22.55 0.21 -0.92 16 15 C -0.21 -8.17 9.97 22.34 0.22 -7.94 16 16 C 0.13 6.17 6.66 22.72 0.15 6.32 16 17 O -0.22 -12.67 9.74 -20.26 -0.20 -12.87 16 18 C -0.42 -23.39 9.48 67.94 0.64 -22.74 16 19 H 0.11 5.40 5.18 -2.91 -0.02 5.38 16 20 C -0.02 -1.06 5.49 84.86 0.47 -0.60 16 21 N -0.91 -54.30 13.67 21.62 0.30 -54.00 16 22 Si 1.02 41.54 29.55 68.60 2.03 43.57 16 23 H -0.25 -9.47 7.11 99.48 0.71 -8.76 16 24 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 25 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 26 C -0.25 -10.45 9.14 22.35 0.20 -10.25 16 27 C -0.04 -1.38 9.78 22.55 0.22 -1.16 16 28 H 0.24 2.44 7.80 -4.42 -0.03 2.41 16 29 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.07 0.71 7.75 -2.39 -0.02 0.69 16 32 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 35 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.42 4.70 8.58 -92.72 -0.80 3.90 16 37 H 0.15 2.56 6.07 -2.91 -0.02 2.54 16 38 H 0.12 3.38 7.52 -2.91 -0.02 3.36 16 39 H 0.16 3.52 6.16 -2.91 -0.02 3.51 16 40 H 0.12 4.71 8.06 -2.91 -0.02 4.69 16 41 H 0.27 14.90 8.31 -92.70 -0.77 14.13 16 42 H 0.12 5.27 5.62 -2.91 -0.02 5.25 16 43 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 Total: -1.00 -74.09 377.50 6.32 -67.76 By element: Atomic # 1 Polarization: 26.61 SS G_CDS: 0.23 Total: 26.85 kcal Atomic # 6 Polarization: -43.35 SS G_CDS: 6.08 Total: -37.27 kcal Atomic # 7 Polarization: -66.63 SS G_CDS: -1.75 Total: -68.38 kcal Atomic # 8 Polarization: -32.26 SS G_CDS: -0.27 Total: -32.53 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Total: -74.09 6.32 -67.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491786247.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.921 kcal (2) G-P(sol) polarization free energy of solvation -74.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds