Wall clock time and date at job start Fri Apr 10 2020 22:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50700 * 119.99668 * 2 1 4 4 N 1.46496 * 109.47078 * 125.00189 * 3 2 1 5 5 C 1.34781 * 119.99996 * 90.00082 * 4 3 2 6 6 O 1.21721 * 119.99700 * 185.74191 * 5 4 3 7 7 C 1.46249 * 119.99950 * 5.45925 * 5 4 3 8 8 C 1.35028 * 119.99725 * 173.66660 * 7 5 4 9 9 C 1.46961 * 120.00224 * 350.33784 * 8 7 5 10 10 C 1.40029 * 120.10050 * 312.04999 * 9 8 7 11 11 C 1.37593 * 119.89476 * 179.76504 * 10 9 8 12 12 C 1.39181 * 120.10133 * 0.50837 * 11 10 9 13 13 O 1.35571 * 119.89773 * 179.76404 * 12 11 10 14 14 C 1.34781 * 117.00036 * 185.61477 * 13 12 11 15 15 H 1.07999 * 119.99887 * 5.36090 * 14 13 12 16 16 C 1.38720 * 119.99814 * 185.36236 * 14 13 12 17 17 N 1.31504 * 120.00309 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99844 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46822 * 59.99782 * 18 16 14 20 20 H 1.48496 * 109.47160 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46882 * 300.00106 * 18 16 14 22 22 C 1.39174 * 120.20455 * 359.74424 * 12 11 10 23 23 C 1.37603 * 120.09906 * 359.97438 * 22 12 11 24 24 C 1.46501 * 119.99901 * 269.99507 * 4 3 2 25 25 C 1.53003 * 117.49868 * 196.64893 * 24 4 3 26 26 C 1.53001 * 117.49663 * 127.98937 * 24 4 3 27 27 H 1.08000 * 120.00021 * 180.02562 * 1 2 3 28 28 H 1.08001 * 120.00551 * 0.02562 * 1 2 3 29 29 H 1.08000 * 120.00173 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.47503 * 5.00039 * 3 2 1 31 31 H 1.09002 * 109.47201 * 244.99980 * 3 2 1 32 32 H 1.08001 * 120.00276 * 353.66975 * 7 5 4 33 33 H 1.08005 * 119.99603 * 170.34377 * 8 7 5 34 34 H 1.07998 * 120.04629 * 0.02562 * 10 9 8 35 35 H 1.07999 * 119.94947 * 180.23436 * 11 10 9 36 36 H 0.97000 * 120.00330 * 179.97438 * 17 16 14 37 37 H 1.07991 * 119.94984 * 179.97438 * 22 12 11 38 38 H 1.08001 * 120.04885 * 180.02562 * 23 22 12 39 39 H 1.08994 * 115.55082 * 342.32178 * 24 4 3 40 40 H 1.09001 * 117.49919 * 359.97438 * 25 24 4 41 41 H 1.08998 * 117.50161 * 145.02487 * 25 24 4 42 42 H 1.08999 * 117.49832 * 214.98190 * 26 24 4 43 43 H 1.09001 * 117.50001 * 359.97438 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9936 1.3320 1.1314 5 6 4.2496 0.8663 0.9823 6 8 4.9892 0.7912 1.9461 7 6 4.7217 0.4454 -0.3364 8 6 6.0154 0.1004 -0.5118 9 6 6.9932 0.3472 0.5571 10 6 7.0450 1.5969 1.1868 11 6 7.9589 1.8218 2.1904 12 6 8.8381 0.8129 2.5728 13 8 9.7402 1.0406 3.5589 14 6 10.6387 0.0661 3.8032 15 1 10.6742 -0.8071 3.1687 16 6 11.5179 0.1848 4.8696 17 7 11.4751 1.2483 5.6419 18 14 12.7628 -1.1661 5.2086 19 1 13.6497 -1.3292 4.0288 20 1 13.5782 -0.8015 6.3949 21 1 12.0495 -2.4418 5.4718 22 6 8.7939 -0.4290 1.9462 23 6 7.8794 -0.6649 0.9455 24 6 2.5587 1.8651 2.4248 25 6 3.6442 2.2311 3.4391 26 6 2.7776 0.9887 3.6597 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5401 0.9353 -0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3585 2.1317 0.0896 31 1 2.6212 1.4027 -0.9314 32 1 4.0358 0.4106 -1.1698 33 1 6.3314 -0.3568 -1.4378 34 1 6.3657 2.3815 0.8879 35 1 7.9971 2.7841 2.6792 36 1 12.0896 1.3311 6.3879 37 1 9.4783 -1.2088 2.2459 38 1 7.8455 -1.6291 0.4601 39 1 1.6630 2.4855 2.4003 40 1 4.6819 2.0749 3.1442 41 1 3.4623 3.0921 4.0822 42 1 2.0259 1.0329 4.4478 43 1 3.2448 0.0153 3.5097 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492341827.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:52:20 Heat of formation + Delta-G solvation = 41.645000 kcal Electronic energy + Delta-G solvation = -25461.676530 eV Core-core repulsion = 21861.185630 eV Total energy + Delta-G solvation = -3600.490900 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.50555 -40.59921 -38.57330 -37.27142 -36.48259 -34.54025 -33.87648 -33.19060 -31.81483 -29.63383 -27.44808 -26.91071 -25.40866 -23.61987 -23.28036 -23.09618 -21.68553 -20.93847 -19.90899 -19.39165 -18.70056 -18.09609 -17.36798 -16.50166 -16.35371 -16.18336 -16.05353 -15.67888 -15.51706 -15.39444 -14.72849 -14.70224 -14.38249 -14.28243 -14.13493 -13.93139 -13.66403 -13.56070 -13.00580 -12.96229 -12.63538 -12.51209 -12.35086 -12.24195 -12.15960 -12.09708 -11.77874 -11.29390 -11.26302 -10.89557 -10.41007 -10.30739 -10.23697 -9.65409 -9.27602 -8.55894 -8.48898 -6.15719 0.01697 0.71679 1.08118 1.30829 1.32639 1.45829 1.49820 2.16916 2.19871 2.38336 2.86122 3.04756 3.22087 3.51247 3.67891 3.97932 4.01444 4.06171 4.11176 4.16181 4.17434 4.19257 4.27881 4.44722 4.55107 4.57284 4.69108 4.76282 4.82206 4.84550 5.05328 5.06701 5.10301 5.13716 5.24543 5.26486 5.38819 5.46789 5.66801 5.71045 5.73215 5.78686 5.83092 5.95994 6.02141 6.25452 6.53316 6.95348 7.40572 7.78155 8.74649 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.022431 B = 0.003081 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.946566 B = 9085.993672 C = 9672.378826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.187 4.187 3 C 0.135 3.865 4 N -0.584 5.584 5 C 0.524 3.476 6 O -0.546 6.546 7 C -0.232 4.232 8 C 0.006 3.994 9 C -0.153 4.153 10 C 0.011 3.989 11 C -0.216 4.216 12 C 0.126 3.874 13 O -0.231 6.231 14 C -0.415 4.415 15 H 0.101 0.899 16 C -0.024 4.024 17 N -0.921 5.921 18 Si 1.021 2.979 19 H -0.254 1.254 20 H -0.270 1.270 21 H -0.258 1.258 22 C -0.257 4.257 23 C -0.050 4.050 24 C 0.094 3.906 25 C -0.213 4.213 26 C -0.190 4.190 27 H 0.101 0.899 28 H 0.114 0.886 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.109 0.891 32 H 0.170 0.830 33 H 0.168 0.832 34 H 0.119 0.881 35 H 0.101 0.899 36 H 0.273 0.727 37 H 0.118 0.882 38 H 0.144 0.856 39 H 0.160 0.840 40 H 0.103 0.897 41 H 0.098 0.902 42 H 0.111 0.889 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.671 -1.901 -16.055 27.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.207 4.207 3 C 0.014 3.986 4 N -0.314 5.314 5 C 0.317 3.683 6 O -0.426 6.426 7 C -0.253 4.253 8 C -0.014 4.014 9 C -0.154 4.154 10 C -0.007 4.007 11 C -0.235 4.235 12 C 0.075 3.925 13 O -0.138 6.138 14 C -0.491 4.491 15 H 0.119 0.881 16 C -0.221 4.221 17 N -0.559 5.559 18 Si 0.839 3.161 19 H -0.178 1.178 20 H -0.194 1.194 21 H -0.183 1.183 22 C -0.276 4.276 23 C -0.068 4.068 24 C -0.011 4.011 25 C -0.250 4.250 26 C -0.229 4.229 27 H 0.120 0.880 28 H 0.132 0.868 29 H 0.115 0.885 30 H 0.123 0.877 31 H 0.127 0.873 32 H 0.187 0.813 33 H 0.185 0.815 34 H 0.137 0.863 35 H 0.119 0.881 36 H 0.082 0.918 37 H 0.135 0.865 38 H 0.162 0.838 39 H 0.177 0.823 40 H 0.121 0.879 41 H 0.117 0.883 42 H 0.129 0.871 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -22.164 -1.636 -15.242 26.949 hybrid contribution 0.800 -0.474 1.005 1.369 sum -21.364 -2.109 -14.238 25.760 Atomic orbital electron populations 1.24035 0.95393 1.02993 0.98116 1.23310 0.96725 0.98610 1.02016 1.20985 0.92294 0.96329 0.88957 1.47440 1.11662 1.61013 1.11276 1.19156 0.81363 0.77157 0.90610 1.90887 1.55992 1.53664 1.42095 1.23177 0.97404 1.08427 0.96246 1.22584 0.91327 0.90769 0.96673 1.18827 1.00249 0.94326 1.01979 1.20613 0.92346 0.96329 0.91449 1.20158 1.01286 0.98233 1.03832 1.20004 0.89425 0.94472 0.88563 1.83885 1.39057 1.43363 1.47458 1.21821 1.11539 1.00968 1.14802 0.88148 1.26663 1.00364 1.00881 0.94218 1.70167 1.38454 1.29698 1.17605 0.84632 0.76533 0.76177 0.78741 1.17843 1.19423 1.18275 1.21072 1.05740 0.97114 1.03656 1.21126 0.92203 0.98809 0.94702 1.21842 0.99545 1.00274 0.79419 1.23713 0.99691 0.99033 1.02589 1.23131 1.03384 0.95197 1.01172 0.88048 0.86824 0.88494 0.87722 0.87329 0.81324 0.81470 0.86276 0.88089 0.91761 0.86461 0.83798 0.82299 0.87938 0.88325 0.87073 0.91865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.54 14.32 67.79 0.97 -0.57 16 2 C -0.19 -2.25 9.85 25.65 0.25 -2.00 16 3 C 0.14 1.54 5.69 85.63 0.49 2.03 16 4 N -0.58 -11.91 2.82 -807.32 -2.28 -14.19 16 5 C 0.52 14.13 6.59 86.32 0.57 14.70 16 6 O -0.55 -20.25 8.01 -4.42 -0.04 -20.29 16 7 C -0.23 -4.70 9.14 23.61 0.22 -4.48 16 8 C 0.01 0.13 9.78 23.82 0.23 0.36 16 9 C -0.15 -5.30 4.40 -20.13 -0.09 -5.38 16 10 C 0.01 0.43 6.67 22.55 0.15 0.58 16 11 C -0.22 -10.50 9.97 22.34 0.22 -10.27 16 12 C 0.13 6.91 6.66 22.72 0.15 7.06 16 13 O -0.23 -14.94 9.74 -20.28 -0.20 -15.13 16 14 C -0.42 -25.55 9.44 67.94 0.64 -24.91 16 15 H 0.10 5.68 5.27 -2.91 -0.02 5.66 16 16 C -0.02 -1.42 5.49 84.86 0.47 -0.95 16 17 N -0.92 -58.95 13.67 21.62 0.30 -58.65 16 18 Si 1.02 44.58 29.55 68.60 2.03 46.61 16 19 H -0.25 -10.34 7.11 99.48 0.71 -9.63 16 20 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 21 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 22 C -0.26 -12.24 9.11 22.34 0.20 -12.04 16 23 C -0.05 -1.91 9.78 22.55 0.22 -1.69 16 24 C 0.09 1.99 6.62 44.99 0.30 2.29 16 25 C -0.21 -6.13 9.63 30.62 0.29 -5.84 16 26 C -0.19 -5.01 9.87 30.62 0.30 -4.71 16 27 H 0.10 0.87 8.06 -2.91 -0.02 0.85 16 28 H 0.11 0.67 7.84 -2.91 -0.02 0.65 16 29 H 0.10 1.43 8.06 -2.91 -0.02 1.41 16 30 H 0.10 0.74 7.68 -2.39 -0.02 0.72 16 31 H 0.11 0.87 5.96 -2.39 -0.01 0.85 16 32 H 0.17 1.92 6.18 -2.91 -0.02 1.90 16 33 H 0.17 2.46 8.06 -2.91 -0.02 2.44 16 34 H 0.12 4.18 7.35 -2.91 -0.02 4.16 16 35 H 0.10 4.97 8.06 -2.91 -0.02 4.95 16 36 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 37 H 0.12 5.63 5.69 -2.92 -0.02 5.62 16 38 H 0.14 4.27 8.06 -2.91 -0.02 4.24 16 39 H 0.16 2.18 8.09 -2.39 -0.02 2.16 16 40 H 0.10 3.92 5.22 -5.23 -0.03 3.89 16 41 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 42 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 43 H 0.06 2.09 7.58 -2.39 -0.02 2.07 16 Total: -1.00 -82.40 359.89 6.40 -75.99 By element: Atomic # 1 Polarization: 30.48 SS G_CDS: 1.00 Total: 31.48 kcal Atomic # 6 Polarization: -51.42 SS G_CDS: 5.59 Total: -45.83 kcal Atomic # 7 Polarization: -70.86 SS G_CDS: -1.98 Total: -72.84 kcal Atomic # 8 Polarization: -35.19 SS G_CDS: -0.23 Total: -35.42 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -82.40 6.40 -75.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492341827.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.638 kcal (2) G-P(sol) polarization free energy of solvation -82.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds