Wall clock time and date at job start Fri Apr 10 2020 22:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47066 * 2 1 4 4 C 1.50706 * 109.46729 * 240.00344 * 2 1 3 5 5 H 1.08000 * 119.99548 * 239.99403 * 4 2 1 6 6 C 1.37872 * 119.99895 * 59.99806 * 4 2 1 7 7 N 1.31511 * 120.00227 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99797 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47298 * 89.99924 * 8 6 4 10 10 H 1.48496 * 109.47128 * 210.00211 * 8 6 4 11 11 H 1.48500 * 109.46790 * 329.99835 * 8 6 4 12 12 C 1.52994 * 109.47508 * 120.00242 * 2 1 3 13 13 N 1.46506 * 109.46971 * 299.99750 * 12 2 1 14 14 C 1.34778 * 119.99767 * 179.97438 * 13 12 2 15 15 O 1.21748 * 120.00347 * 0.02562 * 14 13 12 16 16 C 1.41805 * 119.99756 * 180.27676 * 14 13 12 17 17 C 1.35432 * 120.00171 * 186.11981 * 16 14 13 18 18 C 1.46160 * 119.99535 * 8.99135 * 17 16 14 19 19 C 1.36279 * 125.16448 * 220.03253 * 18 17 16 20 20 C 1.46152 * 106.04745 * 179.97438 * 19 18 17 21 21 C 1.39756 * 134.15951 * 180.02562 * 20 19 18 22 22 C 1.36625 * 119.70505 * 180.02562 * 21 20 19 23 23 C 1.38829 * 120.44154 * 359.96227 * 22 21 20 24 24 C 1.37857 * 120.74851 * 0.02562 * 23 22 21 25 25 C 1.38957 * 119.86863 * 359.97438 * 24 23 22 26 26 O 1.34786 * 133.18498 * 180.30982 * 25 24 23 27 27 H 1.09007 * 109.46899 * 299.99868 * 1 2 3 28 28 H 1.08997 * 109.47400 * 59.99572 * 1 2 3 29 29 H 1.08997 * 109.47105 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47459 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47474 * 300.00084 * 3 2 1 32 32 H 1.09001 * 109.47527 * 60.00179 * 3 2 1 33 33 H 0.97003 * 120.00148 * 179.97438 * 7 6 4 34 34 H 1.08996 * 109.47431 * 180.02562 * 12 2 1 35 35 H 1.09005 * 109.47234 * 59.99538 * 12 2 1 36 36 H 0.96995 * 120.00052 * 0.02562 * 13 12 2 37 37 H 1.08001 * 120.00107 * 6.11930 * 16 14 13 38 38 H 1.07994 * 120.00121 * 188.98386 * 17 16 14 39 39 H 1.07993 * 126.97465 * 359.94823 * 19 18 17 40 40 H 1.08003 * 120.14422 * 359.95112 * 21 20 19 41 41 H 1.08001 * 119.78191 * 180.02562 * 22 21 20 42 42 H 1.08004 * 119.62924 * 180.02562 * 23 22 21 43 43 H 1.08003 * 120.06698 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5884 -1.1315 6 6 1.6991 -0.2393 -2.4827 7 7 0.9434 0.8303 -2.6033 8 14 2.3211 -1.1202 -4.0081 9 1 1.3425 -2.1615 -4.4120 10 1 2.4863 -0.1412 -5.1123 11 1 3.6290 -1.7582 -3.7124 12 6 2.0401 -0.7213 1.2491 13 7 1.5518 -0.0306 2.4454 14 6 1.8771 -0.4914 3.6695 15 8 2.5771 -1.4813 3.7811 16 6 1.3997 0.1736 4.8273 17 6 1.8251 -0.2123 6.0538 18 6 2.9177 -1.1751 6.1787 19 6 2.9723 -2.1864 7.0906 20 6 4.2329 -2.8840 6.8453 21 6 4.8655 -3.9855 7.4280 22 6 6.0773 -4.4002 6.9524 23 6 6.6828 -3.7353 5.8948 24 6 6.0751 -2.6469 5.3060 25 6 4.8424 -2.2064 5.7722 26 8 4.0228 -1.2013 5.4049 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 0.7093 1.1620 -3.4843 34 1 3.1301 -0.7209 1.2493 35 1 1.6767 -1.7490 1.2492 36 1 0.9939 0.7578 2.3564 37 1 0.6967 0.9879 4.7311 38 1 1.3572 0.1914 6.9394 39 1 2.2341 -2.4237 7.8423 40 1 4.3990 -4.5059 8.2515 41 1 6.5671 -5.2515 7.4016 42 1 7.6407 -4.0745 5.5290 43 1 6.5562 -2.1375 4.4841 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493799468.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:52:30 Heat of formation + Delta-G solvation = -3.772424 kcal Electronic energy + Delta-G solvation = -25356.589597 eV Core-core repulsion = 21754.129249 eV Total energy + Delta-G solvation = -3602.460348 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.22380 -40.87717 -38.77189 -38.16519 -35.07436 -34.86786 -33.33562 -32.71215 -31.28230 -29.87239 -27.61127 -27.58937 -27.07211 -24.81447 -23.78255 -22.70297 -22.20961 -20.79601 -20.49880 -18.76050 -18.24480 -17.80906 -17.42546 -17.04836 -16.68797 -16.56916 -16.16407 -15.79184 -15.16935 -15.04926 -14.76704 -14.56646 -14.51353 -14.19593 -14.00529 -13.86408 -13.35260 -13.22917 -13.13662 -13.06676 -12.76966 -12.69627 -12.62233 -12.28009 -12.16210 -11.87156 -11.52034 -11.34651 -11.27244 -10.90633 -10.72073 -10.59959 -10.42227 -9.89986 -9.46682 -8.84541 -8.05219 -6.21168 -0.51925 0.32768 0.50188 1.39871 1.42402 1.51026 1.58369 1.97223 2.38714 2.46369 2.58194 2.80387 3.18040 3.42707 3.75914 4.01911 4.07443 4.15399 4.24230 4.39028 4.41173 4.47284 4.48490 4.60347 4.65858 4.68716 4.92790 4.95392 4.97299 5.03028 5.05570 5.16550 5.18291 5.34170 5.35606 5.37839 5.51110 5.55820 5.60067 5.64035 5.64658 5.84226 6.12663 6.18895 6.33124 6.41019 6.71426 6.82602 7.37419 7.46551 8.93737 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.017709 B = 0.003125 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.739380 B = 8956.511167 C =10146.935161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.053 3.947 3 C -0.120 4.120 4 C -0.532 4.532 5 H 0.040 0.960 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.945 3.055 9 H -0.278 1.278 10 H -0.280 1.280 11 H -0.278 1.278 12 C 0.153 3.847 13 N -0.706 5.706 14 C 0.515 3.485 15 O -0.576 6.576 16 C -0.194 4.194 17 C 0.001 3.999 18 C 0.047 3.953 19 C -0.194 4.194 20 C -0.157 4.157 21 C -0.077 4.077 22 C -0.141 4.141 23 C -0.091 4.091 24 C -0.139 4.139 25 C 0.028 3.972 26 O -0.188 6.188 27 H 0.040 0.960 28 H 0.064 0.936 29 H 0.016 0.984 30 H 0.014 0.986 31 H 0.064 0.936 32 H 0.039 0.961 33 H 0.261 0.739 34 H 0.029 0.971 35 H 0.032 0.968 36 H 0.410 0.590 37 H 0.184 0.816 38 H 0.215 0.785 39 H 0.191 0.809 40 H 0.153 0.847 41 H 0.163 0.837 42 H 0.161 0.839 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.852 -2.546 22.496 22.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.052 3.948 3 C -0.178 4.178 4 C -0.571 4.571 5 H 0.058 0.942 6 C -0.170 4.170 7 N -0.537 5.537 8 Si 0.771 3.229 9 H -0.203 1.203 10 H -0.205 1.205 11 H -0.203 1.203 12 C 0.028 3.972 13 N -0.357 5.357 14 C 0.305 3.695 15 O -0.458 6.458 16 C -0.214 4.214 17 C -0.018 4.018 18 C 0.000 4.000 19 C -0.213 4.213 20 C -0.158 4.158 21 C -0.095 4.095 22 C -0.159 4.159 23 C -0.109 4.109 24 C -0.157 4.157 25 C -0.020 4.020 26 O -0.088 6.088 27 H 0.059 0.941 28 H 0.082 0.918 29 H 0.035 0.965 30 H 0.033 0.967 31 H 0.083 0.917 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.047 0.953 35 H 0.050 0.950 36 H 0.247 0.753 37 H 0.201 0.799 38 H 0.232 0.768 39 H 0.208 0.792 40 H 0.171 0.829 41 H 0.180 0.820 42 H 0.179 0.821 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 3.310 -2.920 22.156 22.591 hybrid contribution 0.139 -0.168 -1.639 1.653 sum 3.450 -3.089 20.517 21.033 Atomic orbital electron populations 1.21670 0.96925 0.98623 1.00597 1.18335 0.93356 0.92961 0.90116 1.21669 0.97715 0.97869 1.00550 1.21276 1.31844 1.12161 0.91814 0.94175 1.25440 0.95105 0.95587 1.00912 1.69896 1.36929 1.23146 1.23686 0.85767 0.78617 0.78584 0.79907 1.20349 1.20523 1.20288 1.21155 0.96434 0.94865 0.84699 1.46069 1.52658 1.31652 1.05365 1.18086 0.80714 0.85295 0.85359 1.90857 1.39359 1.28538 1.87083 1.22627 1.04892 1.02652 0.91260 1.22353 0.89431 0.90357 0.99686 1.21126 0.88798 0.99638 0.90471 1.22976 0.98054 0.96978 1.03256 1.20312 0.96647 0.99907 0.98921 1.20729 0.95175 0.93871 0.99727 1.21178 0.95651 1.01526 0.97550 1.21333 1.00634 0.93247 0.95695 1.20285 0.92611 1.00126 1.02720 1.20247 0.94230 0.90360 0.97146 1.84203 1.27566 1.45619 1.51461 0.94123 0.91751 0.96490 0.96690 0.91714 0.94226 0.92919 0.95269 0.94958 0.75283 0.79881 0.76818 0.79216 0.82891 0.81966 0.82140 0.85856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.43 8.08 71.98 0.58 -4.85 16 2 C 0.05 2.52 0.50 -52.93 -0.03 2.49 16 3 C -0.12 -5.48 8.08 71.98 0.58 -4.89 16 4 C -0.53 -29.10 8.01 25.60 0.21 -28.89 16 5 H 0.04 2.26 7.74 -2.91 -0.02 2.24 16 6 C 0.03 1.58 5.15 84.65 0.44 2.02 16 7 N -0.90 -48.44 9.35 21.44 0.20 -48.24 16 8 Si 0.94 43.41 29.54 68.60 2.03 45.44 16 9 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 12 C 0.15 6.88 4.50 86.38 0.39 7.26 16 13 N -0.71 -25.27 4.95 -471.96 -2.34 -27.60 16 14 C 0.51 18.05 7.38 85.12 0.63 18.68 16 15 O -0.58 -25.34 12.38 19.21 0.24 -25.10 16 16 C -0.19 -4.41 9.86 22.50 0.22 -4.19 16 17 C 0.00 0.02 10.11 23.68 0.24 0.26 16 18 C 0.05 1.36 5.41 23.87 0.13 1.49 16 19 C -0.19 -4.89 11.07 23.87 0.26 -4.63 16 20 C -0.16 -4.50 6.38 -20.23 -0.13 -4.63 16 21 C -0.08 -1.68 10.06 22.26 0.22 -1.46 16 22 C -0.14 -2.70 9.98 22.03 0.22 -2.48 16 23 C -0.09 -2.00 10.01 22.32 0.22 -1.78 16 24 C -0.14 -4.13 10.07 22.35 0.23 -3.90 16 25 C 0.03 0.97 7.40 23.07 0.17 1.14 16 26 O -0.19 -6.97 7.77 10.11 0.08 -6.89 16 27 H 0.04 1.51 6.86 -2.38 -0.02 1.49 16 28 H 0.06 3.21 6.07 -2.39 -0.01 3.19 16 29 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.01 0.66 8.14 -2.39 -0.02 0.65 16 31 H 0.06 3.25 6.07 -2.39 -0.01 3.23 16 32 H 0.04 1.49 6.86 -2.39 -0.02 1.48 16 33 H 0.26 13.52 8.31 -92.71 -0.77 12.75 16 34 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.03 1.56 8.14 -2.38 -0.02 1.54 16 36 H 0.41 12.35 6.12 -92.71 -0.57 11.79 16 37 H 0.18 2.44 8.06 -2.91 -0.02 2.42 16 38 H 0.22 1.65 8.06 -2.91 -0.02 1.62 16 39 H 0.19 3.15 8.06 -2.91 -0.02 3.13 16 40 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 41 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 42 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 43 H 0.12 3.57 8.06 -2.91 -0.02 3.55 16 Total: -1.00 -74.06 354.38 5.25 -68.81 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: 0.46 Total: 21.94 kcal Atomic # 6 Polarization: -32.93 SS G_CDS: 4.58 Total: -28.34 kcal Atomic # 7 Polarization: -73.71 SS G_CDS: -2.13 Total: -75.84 kcal Atomic # 8 Polarization: -32.31 SS G_CDS: 0.32 Total: -32.00 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -74.06 5.25 -68.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493799468.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.036 kcal (2) G-P(sol) polarization free energy of solvation -74.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds