Wall clock time and date at job start Fri Apr 10 2020 22:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46858 * 2 1 4 4 N 1.46492 * 109.47274 * 120.00326 * 2 1 3 5 5 C 1.46501 * 119.99868 * 293.36049 * 4 2 1 6 6 C 1.50703 * 109.47421 * 269.99933 * 5 4 2 7 7 H 1.08001 * 119.99708 * 0.02562 * 6 5 4 8 8 C 1.37869 * 120.00057 * 179.97438 * 6 5 4 9 9 N 1.31517 * 120.00311 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00043 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47286 * 89.99973 * 10 8 6 12 12 H 1.48500 * 109.47677 * 210.00660 * 10 8 6 13 13 H 1.48506 * 109.47230 * 330.00259 * 10 8 6 14 14 C 1.34778 * 120.00498 * 113.36548 * 4 2 1 15 15 O 1.21547 * 120.00299 * 182.60378 * 14 4 2 16 16 C 1.47864 * 119.99382 * 2.59875 * 14 4 2 17 17 C 1.39654 * 120.09151 * 313.18655 * 16 14 4 18 18 C 1.38020 * 120.09556 * 179.97438 * 17 16 14 19 19 C 1.38157 * 120.27700 * 359.78950 * 18 17 16 20 20 C 1.39406 * 120.16890 * 0.46757 * 19 18 17 21 21 C 1.48438 * 120.04544 * 179.79142 * 20 19 18 22 22 C 1.46700 * 127.11385 * 359.74361 * 21 20 19 23 23 C 1.34382 * 106.02897 * 180.02562 * 22 21 20 24 24 O 1.34163 * 108.98155 * 359.75685 * 23 22 21 25 25 C 1.34093 * 110.74263 * 0.41434 * 24 23 22 26 26 C 1.39096 * 119.90128 * 359.50726 * 20 19 18 27 27 H 1.09001 * 109.46721 * 299.99739 * 1 2 3 28 28 H 1.08994 * 109.47389 * 59.99684 * 1 2 3 29 29 H 1.09004 * 109.47232 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46721 * 240.00261 * 2 1 3 31 31 H 1.09004 * 109.46746 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47252 * 299.99944 * 3 2 1 33 33 H 1.08992 * 109.47410 * 60.00414 * 3 2 1 34 34 H 1.09003 * 109.47320 * 30.00220 * 5 4 2 35 35 H 1.09003 * 109.46984 * 150.00069 * 5 4 2 36 36 H 0.96994 * 119.99890 * 179.97438 * 9 8 6 37 37 H 1.08001 * 119.95118 * 0.02562 * 17 16 14 38 38 H 1.08006 * 119.85965 * 180.02562 * 18 17 16 39 39 H 1.07998 * 119.91495 * 180.23170 * 19 18 17 40 40 H 1.08000 * 126.98972 * 0.02562 * 22 21 20 41 41 H 1.07998 * 125.50561 * 180.02562 * 23 22 21 42 42 H 1.08001 * 125.76402 * 179.85819 * 25 24 23 43 43 H 1.08006 * 120.13505 * 180.27282 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.7882 -0.1111 2.5218 6 6 2.9391 0.7929 2.8816 7 1 3.7596 0.9231 2.1915 8 6 2.9439 1.4545 4.0911 9 7 1.9444 1.2963 4.9312 10 14 4.3700 2.5756 4.5368 11 1 4.0818 3.9542 4.0661 12 1 4.5517 2.5836 6.0107 13 1 5.6106 2.0803 3.8880 14 6 2.6794 -1.8591 1.0769 15 8 3.0431 -2.4558 2.0715 16 6 2.9622 -2.4151 -0.2637 17 6 1.9532 -2.4653 -1.2279 18 6 2.2171 -2.9838 -2.4795 19 6 3.4801 -3.4516 -2.7875 20 6 4.4942 -3.4119 -1.8318 21 6 5.8489 -3.9196 -2.1642 22 6 6.2897 -4.4971 -3.4387 23 6 7.5856 -4.8129 -3.2745 24 8 7.9626 -4.4766 -2.0316 25 6 6.9362 -3.9460 -1.3512 26 6 4.2364 -2.8903 -0.5684 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 0.8631 0.4652 2.5108 35 1 1.7097 -0.9103 3.2589 36 1 1.9481 1.7615 5.7823 37 1 0.9651 -2.0971 -0.9942 38 1 1.4341 -3.0204 -3.2225 39 1 3.6811 -3.8527 -3.7699 40 1 5.6940 -4.6395 -4.3282 41 1 8.2218 -5.2607 -4.0235 42 1 6.9698 -3.5947 -0.3305 43 1 5.0205 -2.8537 0.1734 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000535564470.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:52:37 Heat of formation + Delta-G solvation = 7.327759 kcal Electronic energy + Delta-G solvation = -25647.129069 eV Core-core repulsion = 22045.150061 eV Total energy + Delta-G solvation = -3601.979008 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.49036 -40.00180 -38.05856 -36.01110 -33.75420 -32.81767 -31.21748 -30.91038 -30.76919 -28.91533 -27.35916 -26.68204 -24.02928 -23.50538 -22.46591 -21.66836 -20.81922 -20.33818 -18.81697 -17.69928 -16.58450 -16.44850 -16.24550 -16.06615 -15.45327 -15.14069 -14.82473 -14.35684 -13.94426 -13.86280 -13.62091 -13.30811 -13.04157 -12.93940 -12.87445 -12.47064 -12.38303 -12.20561 -11.80562 -11.63413 -11.39217 -11.19090 -11.09202 -10.92967 -10.87842 -10.64117 -10.46762 -10.19110 -9.97357 -9.55043 -9.16856 -9.06669 -8.79077 -8.41982 -8.05927 -7.66942 -6.03219 -4.06706 0.87993 1.26178 1.76750 2.52680 2.93279 3.30117 3.36670 3.38570 3.44344 3.79241 4.07591 4.41483 4.46469 4.55856 4.85144 4.88613 5.02358 5.08185 5.24219 5.30488 5.31308 5.36766 5.38832 5.54956 5.64388 5.71512 5.85701 5.90319 6.00186 6.03622 6.12196 6.20004 6.27157 6.36901 6.40448 6.49154 6.50757 6.62760 6.87521 6.98617 6.99050 7.11437 7.46701 7.55258 7.93517 8.24931 8.40907 8.89577 9.06046 9.57437 11.04990 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.013997 B = 0.003866 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.897165 B = 7241.178133 C = 8512.724291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.118 3.882 3 C -0.153 4.153 4 N -0.582 5.582 5 C 0.246 3.754 6 C -0.520 4.520 7 H 0.058 0.942 8 C 0.061 3.939 9 N -0.895 5.895 10 Si 0.895 3.105 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.275 1.275 14 C 0.545 3.455 15 O -0.536 6.536 16 C -0.104 4.104 17 C -0.098 4.098 18 C -0.123 4.123 19 C -0.099 4.099 20 C -0.019 4.019 21 C -0.145 4.145 22 C -0.205 4.205 23 C -0.039 4.039 24 O -0.181 6.181 25 C -0.016 4.016 26 C -0.069 4.069 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.088 0.912 31 H 0.056 0.944 32 H 0.048 0.952 33 H 0.078 0.922 34 H 0.035 0.965 35 H 0.043 0.957 36 H 0.263 0.737 37 H 0.133 0.867 38 H 0.127 0.873 39 H 0.123 0.877 40 H 0.151 0.849 41 H 0.203 0.797 42 H 0.208 0.792 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.157 -8.422 -19.712 21.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.014 3.986 3 C -0.211 4.211 4 N -0.313 5.313 5 C 0.127 3.873 6 C -0.559 4.559 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.534 5.534 10 Si 0.723 3.277 11 H -0.207 1.207 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.331 3.669 15 O -0.414 6.414 16 C -0.107 4.107 17 C -0.117 4.117 18 C -0.141 4.141 19 C -0.118 4.118 20 C -0.019 4.019 21 C -0.146 4.146 22 C -0.224 4.224 23 C -0.105 4.105 24 O -0.077 6.077 25 C -0.084 4.084 26 C -0.087 4.087 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.106 0.894 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.097 0.903 34 H 0.053 0.947 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.151 0.849 38 H 0.145 0.855 39 H 0.140 0.860 40 H 0.169 0.831 41 H 0.219 0.781 42 H 0.224 0.776 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.547 -8.685 -18.853 21.059 hybrid contribution 0.514 0.767 0.184 0.941 sum 4.061 -7.918 -18.669 20.682 Atomic orbital electron populations 1.22215 0.95779 1.01608 1.02610 1.21370 0.93843 0.94608 0.88767 1.22087 1.01646 0.95323 1.02062 1.48267 1.53592 1.20232 1.09185 1.19273 0.96760 0.93962 0.77272 1.21428 1.05945 1.26118 1.02368 0.92355 1.24915 0.96126 0.97004 0.96049 1.69930 1.31082 1.43051 1.09354 0.86547 0.82799 0.80732 0.77656 1.20673 1.21144 1.19943 1.18199 0.79181 0.81706 0.87783 1.90762 1.52283 1.59920 1.38430 1.20160 0.94624 1.00834 0.95118 1.21531 0.99351 0.97992 0.92808 1.20978 0.96792 0.99574 0.96726 1.21158 0.92528 0.99370 0.98708 1.17915 0.91078 0.99318 0.93617 1.20235 0.93788 1.06227 0.94392 1.22799 0.95593 1.05402 0.98564 1.23889 0.96382 1.04460 0.85791 1.83891 1.38024 1.62256 1.23523 1.24252 0.84882 1.00929 0.98290 1.21128 0.96181 0.96042 0.95391 0.91326 0.92048 0.92920 0.89446 0.92520 0.93309 0.90256 0.94694 0.93885 0.92775 0.84882 0.85474 0.85950 0.83100 0.78078 0.77553 0.85350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 8.82 37.16 0.33 -2.02 16 2 C 0.12 1.97 2.42 -67.93 -0.16 1.81 16 3 C -0.15 -2.61 8.32 37.16 0.31 -2.30 16 4 N -0.58 -12.39 2.38 -168.57 -0.40 -12.79 16 5 C 0.25 6.34 4.45 -5.19 -0.02 6.31 16 6 C -0.52 -14.40 7.86 -34.44 -0.27 -14.67 16 7 H 0.06 1.62 7.51 -52.49 -0.39 1.23 16 8 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 9 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 10 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 14 C 0.55 11.84 7.26 -12.32 -0.09 11.75 16 15 O -0.54 -13.91 16.57 5.32 0.09 -13.82 16 16 C -0.10 -1.78 5.08 -105.01 -0.53 -2.31 16 17 C -0.10 -1.35 7.30 -39.13 -0.29 -1.64 16 18 C -0.12 -1.38 10.02 -39.69 -0.40 -1.78 16 19 C -0.10 -1.14 9.61 -39.18 -0.38 -1.52 16 20 C -0.02 -0.25 5.87 -104.94 -0.62 -0.87 16 21 C -0.15 -1.77 6.24 -103.16 -0.64 -2.42 16 22 C -0.20 -2.00 10.54 -37.53 -0.40 -2.40 16 23 C -0.04 -0.34 12.05 29.37 0.35 0.02 16 24 O -0.18 -2.00 10.55 6.65 0.07 -1.93 16 25 C -0.02 -0.19 11.53 29.85 0.34 0.16 16 26 C -0.07 -1.08 9.23 -38.84 -0.36 -1.44 16 27 H 0.07 1.11 6.95 -51.93 -0.36 0.74 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.71 7.04 -51.93 -0.37 0.34 16 30 H 0.09 1.30 4.30 -51.93 -0.22 1.08 16 31 H 0.06 1.03 7.93 -51.93 -0.41 0.62 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.08 1.56 6.92 -51.93 -0.36 1.20 16 34 H 0.04 0.91 6.73 -51.93 -0.35 0.56 16 35 H 0.04 1.27 7.39 -51.93 -0.38 0.88 16 36 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 37 H 0.13 1.70 5.26 -52.49 -0.28 1.42 16 38 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 39 H 0.12 1.09 7.24 -52.49 -0.38 0.71 16 40 H 0.15 1.12 7.60 -52.49 -0.40 0.72 16 41 H 0.20 0.93 8.06 -52.49 -0.42 0.51 16 42 H 0.21 2.06 7.33 -52.49 -0.38 1.68 16 43 H 0.13 2.03 7.08 -52.48 -0.37 1.66 16 LS Contribution 355.68 15.07 5.36 5.36 Total: -1.00 -33.72 355.68 -7.57 -41.29 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -5.48 Total: 2.45 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: -2.92 Total: -11.69 kcal Atomic # 7 Polarization: -38.73 SS G_CDS: 0.33 Total: -38.39 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: 0.16 Total: -15.75 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.72 -7.57 -41.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000535564470.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.619 kcal (2) G-P(sol) polarization free energy of solvation -33.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds