Wall clock time and date at job start Fri Apr 10 2020 22:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46858 * 2 1 4 4 N 1.46492 * 109.47274 * 120.00326 * 2 1 3 5 5 C 1.46501 * 119.99868 * 293.36049 * 4 2 1 6 6 C 1.50703 * 109.47421 * 269.99933 * 5 4 2 7 7 H 1.08001 * 119.99708 * 0.02562 * 6 5 4 8 8 C 1.37869 * 120.00057 * 179.97438 * 6 5 4 9 9 N 1.31517 * 120.00311 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00043 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47286 * 89.99973 * 10 8 6 12 12 H 1.48500 * 109.47677 * 210.00660 * 10 8 6 13 13 H 1.48506 * 109.47230 * 330.00259 * 10 8 6 14 14 C 1.34778 * 120.00498 * 113.36548 * 4 2 1 15 15 O 1.21547 * 120.00299 * 182.60378 * 14 4 2 16 16 C 1.47864 * 119.99382 * 2.59875 * 14 4 2 17 17 C 1.39654 * 120.09151 * 313.18655 * 16 14 4 18 18 C 1.38020 * 120.09556 * 179.97438 * 17 16 14 19 19 C 1.38157 * 120.27700 * 359.78950 * 18 17 16 20 20 C 1.39406 * 120.16890 * 0.46757 * 19 18 17 21 21 C 1.48438 * 120.04544 * 179.79142 * 20 19 18 22 22 C 1.46700 * 127.11385 * 359.74361 * 21 20 19 23 23 C 1.34382 * 106.02897 * 180.02562 * 22 21 20 24 24 O 1.34163 * 108.98155 * 359.75685 * 23 22 21 25 25 C 1.34093 * 110.74263 * 0.41434 * 24 23 22 26 26 C 1.39096 * 119.90128 * 359.50726 * 20 19 18 27 27 H 1.09001 * 109.46721 * 299.99739 * 1 2 3 28 28 H 1.08994 * 109.47389 * 59.99684 * 1 2 3 29 29 H 1.09004 * 109.47232 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46721 * 240.00261 * 2 1 3 31 31 H 1.09004 * 109.46746 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47252 * 299.99944 * 3 2 1 33 33 H 1.08992 * 109.47410 * 60.00414 * 3 2 1 34 34 H 1.09003 * 109.47320 * 30.00220 * 5 4 2 35 35 H 1.09003 * 109.46984 * 150.00069 * 5 4 2 36 36 H 0.96994 * 119.99890 * 179.97438 * 9 8 6 37 37 H 1.08001 * 119.95118 * 0.02562 * 17 16 14 38 38 H 1.08006 * 119.85965 * 180.02562 * 18 17 16 39 39 H 1.07998 * 119.91495 * 180.23170 * 19 18 17 40 40 H 1.08000 * 126.98972 * 0.02562 * 22 21 20 41 41 H 1.07998 * 125.50561 * 180.02562 * 23 22 21 42 42 H 1.08001 * 125.76402 * 179.85819 * 25 24 23 43 43 H 1.08006 * 120.13505 * 180.27282 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.7882 -0.1111 2.5218 6 6 2.9391 0.7929 2.8816 7 1 3.7596 0.9231 2.1915 8 6 2.9439 1.4545 4.0911 9 7 1.9444 1.2963 4.9312 10 14 4.3700 2.5756 4.5368 11 1 4.0818 3.9542 4.0661 12 1 4.5517 2.5836 6.0107 13 1 5.6106 2.0803 3.8880 14 6 2.6794 -1.8591 1.0769 15 8 3.0431 -2.4558 2.0715 16 6 2.9622 -2.4151 -0.2637 17 6 1.9532 -2.4653 -1.2279 18 6 2.2171 -2.9838 -2.4795 19 6 3.4801 -3.4516 -2.7875 20 6 4.4942 -3.4119 -1.8318 21 6 5.8489 -3.9196 -2.1642 22 6 6.2897 -4.4971 -3.4387 23 6 7.5856 -4.8129 -3.2745 24 8 7.9626 -4.4766 -2.0316 25 6 6.9362 -3.9460 -1.3512 26 6 4.2364 -2.8903 -0.5684 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 0.8631 0.4652 2.5108 35 1 1.7097 -0.9103 3.2589 36 1 1.9481 1.7615 5.7823 37 1 0.9651 -2.0971 -0.9942 38 1 1.4341 -3.0204 -3.2225 39 1 3.6811 -3.8527 -3.7699 40 1 5.6940 -4.6395 -4.3282 41 1 8.2218 -5.2607 -4.0235 42 1 6.9698 -3.5947 -0.3305 43 1 5.0205 -2.8537 0.1734 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000535564470.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:52:36 Heat of formation + Delta-G solvation = -12.687683 kcal Electronic energy + Delta-G solvation = -25647.997004 eV Core-core repulsion = 22045.150061 eV Total energy + Delta-G solvation = -3602.846942 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.28101 -41.43377 -39.35837 -37.67892 -35.09836 -34.50784 -32.52589 -32.26325 -31.80698 -29.83933 -29.23915 -27.99256 -25.70226 -24.55954 -23.96260 -22.85975 -21.90267 -21.25956 -20.09650 -18.88339 -18.62714 -17.89008 -17.30904 -17.04885 -16.87424 -16.45026 -16.27985 -15.79048 -15.36440 -15.03657 -14.94572 -14.60691 -14.37564 -14.13303 -13.92434 -13.75904 -13.71147 -13.37539 -13.29556 -13.15203 -12.90694 -12.80001 -12.58398 -12.47719 -12.26348 -12.14136 -12.10528 -11.78066 -11.58276 -11.17184 -10.71447 -10.63210 -9.97530 -9.90661 -9.48375 -9.02583 -8.22212 -6.34497 -0.14043 0.15482 1.01083 1.33726 1.36572 1.46390 1.61088 1.87668 2.19949 2.27164 2.40585 2.90356 3.07486 3.48456 3.62725 3.79636 3.95275 3.97963 4.02357 4.23694 4.25300 4.29965 4.43054 4.51840 4.58333 4.72136 4.81986 4.85458 4.89882 4.97163 5.00790 5.01802 5.08298 5.16147 5.18699 5.35883 5.39395 5.44006 5.51273 5.52505 5.56723 5.61423 5.83315 5.91151 6.07315 6.20295 6.68173 6.75055 7.24281 7.40261 8.85418 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.013997 B = 0.003866 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.897165 B = 7241.178133 C = 8512.724291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.111 3.889 3 C -0.148 4.148 4 N -0.585 5.585 5 C 0.265 3.735 6 C -0.529 4.529 7 H 0.051 0.949 8 C 0.009 3.991 9 N -0.928 5.928 10 Si 0.962 3.038 11 H -0.263 1.263 12 H -0.281 1.281 13 H -0.276 1.276 14 C 0.536 3.464 15 O -0.598 6.598 16 C -0.129 4.129 17 C -0.100 4.100 18 C -0.104 4.104 19 C -0.087 4.087 20 C -0.020 4.020 21 C -0.165 4.165 22 C -0.211 4.211 23 C -0.032 4.032 24 O -0.193 6.193 25 C -0.036 4.036 26 C -0.090 4.090 27 H 0.042 0.958 28 H 0.103 0.897 29 H 0.061 0.939 30 H 0.115 0.885 31 H 0.036 0.964 32 H 0.092 0.908 33 H 0.045 0.955 34 H 0.030 0.970 35 H -0.007 1.007 36 H 0.266 0.734 37 H 0.144 0.856 38 H 0.174 0.826 39 H 0.161 0.839 40 H 0.180 0.820 41 H 0.244 0.756 42 H 0.205 0.795 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.190 -8.566 -24.445 26.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.009 3.991 3 C -0.206 4.206 4 N -0.314 5.314 5 C 0.144 3.856 6 C -0.568 4.568 7 H 0.069 0.931 8 C -0.190 4.190 9 N -0.568 5.568 10 Si 0.786 3.214 11 H -0.187 1.187 12 H -0.206 1.206 13 H -0.201 1.201 14 C 0.325 3.675 15 O -0.480 6.480 16 C -0.132 4.132 17 C -0.118 4.118 18 C -0.122 4.122 19 C -0.105 4.105 20 C -0.020 4.020 21 C -0.167 4.167 22 C -0.229 4.229 23 C -0.098 4.098 24 O -0.089 6.089 25 C -0.103 4.103 26 C -0.109 4.109 27 H 0.061 0.939 28 H 0.121 0.879 29 H 0.080 0.920 30 H 0.133 0.867 31 H 0.056 0.944 32 H 0.111 0.889 33 H 0.065 0.935 34 H 0.047 0.953 35 H 0.011 0.989 36 H 0.075 0.925 37 H 0.162 0.838 38 H 0.191 0.809 39 H 0.178 0.822 40 H 0.198 0.802 41 H 0.260 0.740 42 H 0.222 0.778 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 3.562 -8.807 -23.635 25.473 hybrid contribution 0.533 0.728 1.551 1.794 sum 4.095 -8.080 -22.084 23.869 Atomic orbital electron populations 1.22183 0.93528 1.02517 1.03341 1.21780 0.95610 0.94117 0.87559 1.22036 1.00386 0.95671 1.02531 1.48295 1.53605 1.20463 1.09064 1.18694 0.96096 0.91863 0.78939 1.21614 1.06153 1.26422 1.02606 0.93105 1.25781 0.98784 0.98520 0.95893 1.70047 1.32913 1.44062 1.09792 0.85505 0.79154 0.79328 0.77389 1.18748 1.20639 1.20070 1.19057 0.77821 0.81225 0.89347 1.90703 1.54626 1.61647 1.41072 1.19794 0.96462 1.03596 0.93349 1.21674 0.98696 0.98342 0.93125 1.21438 0.97751 0.96969 0.96017 1.21647 0.91773 0.97515 0.99520 1.18076 0.92478 0.98671 0.92809 1.20444 0.93277 1.06957 0.95976 1.23130 0.96223 1.05266 0.98318 1.24779 0.96899 1.02923 0.85185 1.83896 1.38009 1.62333 1.24705 1.24377 0.85480 1.01716 0.98758 1.21077 0.95496 0.97702 0.96638 0.93929 0.87868 0.91979 0.86714 0.94443 0.88947 0.93536 0.95256 0.98870 0.92488 0.83825 0.80889 0.82169 0.80249 0.73995 0.77825 0.87451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.27 8.82 71.98 0.63 -3.64 16 2 C 0.11 3.67 2.42 44.99 0.11 3.78 16 3 C -0.15 -5.00 8.32 71.98 0.60 -4.40 16 4 N -0.58 -26.29 2.38 -805.51 -1.92 -28.21 16 5 C 0.26 14.68 4.45 85.63 0.38 15.06 16 6 C -0.53 -30.99 7.86 25.60 0.20 -30.79 16 7 H 0.05 2.98 7.51 -2.91 -0.02 2.96 16 8 C 0.01 0.52 5.46 84.65 0.46 0.99 16 9 N -0.93 -56.91 13.29 21.44 0.28 -56.63 16 10 Si 0.96 45.89 29.54 68.60 2.03 47.92 16 11 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 12 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 13 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 14 C 0.54 24.91 7.26 86.79 0.63 25.54 16 15 O -0.60 -34.00 16.57 -3.86 -0.06 -34.06 16 16 C -0.13 -4.51 5.08 -20.11 -0.10 -4.61 16 17 C -0.10 -2.52 7.30 22.56 0.16 -2.36 16 18 C -0.10 -1.84 10.02 22.20 0.22 -1.62 16 19 C -0.09 -1.61 9.61 22.53 0.22 -1.40 16 20 C -0.02 -0.51 5.87 -20.07 -0.12 -0.63 16 21 C -0.17 -3.83 6.24 -18.92 -0.12 -3.95 16 22 C -0.21 -3.40 10.54 23.60 0.25 -3.16 16 23 C -0.03 -0.47 12.05 66.94 0.81 0.34 16 24 O -0.19 -4.09 10.55 0.88 0.01 -4.08 16 25 C -0.04 -0.85 11.53 67.25 0.78 -0.07 16 26 C -0.09 -2.96 9.23 22.75 0.21 -2.75 16 27 H 0.04 1.37 6.95 -2.39 -0.02 1.36 16 28 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.06 1.56 7.04 -2.38 -0.02 1.54 16 30 H 0.12 3.19 4.30 -2.39 -0.01 3.18 16 31 H 0.04 1.37 7.93 -2.39 -0.02 1.35 16 32 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.05 1.86 6.92 -2.39 -0.02 1.85 16 34 H 0.03 1.64 6.73 -2.39 -0.02 1.62 16 35 H -0.01 -0.44 7.39 -2.39 -0.02 -0.46 16 36 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 37 H 0.14 3.26 5.26 -2.91 -0.02 3.25 16 38 H 0.17 1.57 8.06 -2.91 -0.02 1.55 16 39 H 0.16 1.82 7.24 -2.91 -0.02 1.79 16 40 H 0.18 1.73 7.60 -2.91 -0.02 1.71 16 41 H 0.24 1.16 8.06 -2.91 -0.02 1.13 16 42 H 0.21 4.60 7.33 -2.91 -0.02 4.58 16 43 H 0.11 3.81 7.08 -2.91 -0.02 3.79 16 Total: -1.00 -81.32 355.68 6.69 -74.63 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: 1.03 Total: 14.09 kcal Atomic # 6 Polarization: -18.98 SS G_CDS: 5.32 Total: -13.66 kcal Atomic # 7 Polarization: -83.20 SS G_CDS: -1.64 Total: -84.84 kcal Atomic # 8 Polarization: -38.09 SS G_CDS: -0.05 Total: -38.14 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -81.32 6.69 -74.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000535564470.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.947 kcal (2) G-P(sol) polarization free energy of solvation -81.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds