Wall clock time and date at job start Fri Apr 10 2020 22:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47126 * 2 1 4 4 C 1.50705 * 109.46545 * 240.00169 * 2 1 3 5 5 H 1.08002 * 119.99351 * 239.99750 * 4 2 1 6 6 C 1.37877 * 120.00102 * 60.00173 * 4 2 1 7 7 N 1.31508 * 120.00153 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99783 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47448 * 89.99980 * 8 6 4 10 10 H 1.48504 * 109.47145 * 209.99837 * 8 6 4 11 11 H 1.48505 * 109.47299 * 329.99753 * 8 6 4 12 12 C 1.52995 * 109.47178 * 120.00338 * 2 1 3 13 13 N 1.46906 * 109.46978 * 299.99807 * 12 2 1 14 14 C 1.46901 * 110.99793 * 180.02562 * 13 12 2 15 15 C 1.53000 * 109.46769 * 180.02562 * 14 13 12 16 16 H 1.08992 * 109.47399 * 59.99697 * 15 14 13 17 17 O 1.42900 * 109.47041 * 299.99294 * 15 14 13 18 18 C 1.53001 * 109.46886 * 180.02562 * 15 14 13 19 19 O 1.42897 * 109.47209 * 185.00085 * 18 15 14 20 20 C 1.42902 * 114.00486 * 179.97438 * 19 18 15 21 21 C 1.50699 * 109.47486 * 179.97438 * 20 19 18 22 22 C 1.33393 * 125.19868 * 89.99640 * 21 20 19 23 23 C 1.38422 * 114.91766 * 179.97438 * 22 21 20 24 24 C 1.33395 * 114.92151 * 0.02562 * 23 22 21 25 25 S 1.75879 * 125.20252 * 269.69380 * 21 20 19 26 26 H 1.09001 * 109.46911 * 299.99928 * 1 2 3 27 27 H 1.08997 * 109.47727 * 59.99909 * 1 2 3 28 28 H 1.09002 * 109.47026 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47367 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.47425 * 300.00031 * 3 2 1 31 31 H 1.09001 * 109.47167 * 60.00229 * 3 2 1 32 32 H 0.97003 * 120.00239 * 180.02562 * 7 6 4 33 33 H 1.08995 * 109.46859 * 180.02562 * 12 2 1 34 34 H 1.09002 * 109.47639 * 59.99767 * 12 2 1 35 35 H 1.00899 * 110.99995 * 56.04730 * 13 12 2 36 36 H 1.09002 * 109.47401 * 59.99808 * 14 13 12 37 37 H 1.09001 * 109.46874 * 299.99821 * 14 13 12 38 38 H 0.96698 * 114.00516 * 300.00983 * 17 15 14 39 39 H 1.09008 * 109.46864 * 304.99696 * 18 15 14 40 40 H 1.09000 * 109.47679 * 64.99728 * 18 15 14 41 41 H 1.09000 * 109.46665 * 299.99657 * 20 19 18 42 42 H 1.09000 * 109.46977 * 59.99153 * 20 19 18 43 43 H 1.07998 * 122.54383 * 359.95738 * 22 21 20 44 44 H 1.08001 * 122.53974 * 180.02562 * 23 22 21 45 45 H 1.08002 * 125.20325 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.6531 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3222 -1.1195 -4.0080 9 1 1.3445 -2.1615 -4.4124 10 1 2.4870 -0.1402 -5.1121 11 1 3.6306 -1.7566 -3.7121 12 6 2.0400 -0.7213 1.2492 13 7 1.5504 -0.0288 2.4487 14 6 2.0219 -0.6947 3.6702 15 6 1.4923 0.0532 4.8955 16 1 0.4025 0.0523 4.8787 17 8 1.9680 1.4005 4.8735 18 6 1.9839 -0.6399 6.1678 19 8 1.3960 -0.0129 7.3094 20 6 1.7912 -0.5880 8.5565 21 6 1.1157 0.1473 9.6853 22 6 -0.0697 -0.1693 10.2086 23 6 -0.4893 0.6517 11.2411 24 6 0.3551 1.6352 11.5558 25 16 1.7733 1.5494 10.5190 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.1299 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 0.7080 1.1609 -3.4844 33 1 3.1300 -0.7209 1.2493 34 1 1.6767 -1.7490 1.2492 35 1 0.5438 0.0413 2.4402 36 1 3.1118 -0.6941 3.6868 37 1 1.6587 -1.7222 3.6872 38 1 2.9318 1.4777 4.8866 39 1 1.6971 -1.6913 6.1428 40 1 3.0694 -0.5608 6.2286 41 1 1.5000 -1.6381 8.5807 42 1 2.8726 -0.5082 8.6669 43 1 -0.6576 -1.0027 9.8535 44 1 -1.4292 0.5069 11.7530 45 1 0.1948 2.3689 12.3321 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000562999797.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:52:43 Heat of formation + Delta-G solvation = -64.797820 kcal Electronic energy + Delta-G solvation = -23215.051461 eV Core-core repulsion = 19745.388805 eV Total energy + Delta-G solvation = -3469.662656 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.150 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.99637 -38.07460 -37.09694 -36.14207 -33.60111 -31.62070 -30.99992 -29.32417 -26.48884 -25.53805 -25.28684 -25.02201 -23.24146 -22.82394 -21.55198 -19.61726 -18.41485 -17.68523 -17.17231 -16.62511 -16.21448 -15.82753 -15.59519 -15.25344 -14.83143 -14.50816 -14.16081 -13.68649 -13.46732 -13.20859 -13.08853 -12.82561 -12.54685 -12.40411 -12.13643 -12.00119 -11.88156 -11.70295 -11.12530 -11.05748 -10.99990 -10.78617 -10.62022 -10.56877 -10.16121 -10.04703 -9.96684 -9.87983 -9.35493 -9.11169 -9.00490 -8.76345 -8.59983 -8.27160 -7.68989 -5.89193 -3.99845 0.60308 1.30888 1.69222 2.37302 3.31800 3.38949 3.40996 3.43322 4.35700 4.46419 4.53734 4.71077 4.73194 4.83677 4.90566 4.95009 5.14586 5.17863 5.22875 5.27180 5.30169 5.35951 5.45543 5.76225 5.77442 5.93683 6.08712 6.13970 6.32214 6.38490 6.73689 6.85619 6.91233 7.11011 7.19249 7.43930 7.50146 7.71973 7.78528 7.83645 7.85813 7.99378 8.23810 8.37799 8.57732 9.01570 9.64919 11.11220 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.041752 B = 0.001900 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.465320 B =14736.338274 C =14814.960228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.068 3.932 3 C -0.119 4.119 4 C -0.506 4.506 5 H 0.051 0.949 6 C 0.064 3.936 7 N -0.884 5.884 8 Si 0.889 3.111 9 H -0.283 1.283 10 H -0.287 1.287 11 H -0.276 1.276 12 C 0.076 3.924 13 N -0.675 5.675 14 C 0.030 3.970 15 C 0.115 3.885 16 H 0.101 0.899 17 O -0.537 6.537 18 C 0.030 3.970 19 O -0.369 6.369 20 C 0.132 3.868 21 C -0.181 4.181 22 C -0.119 4.119 23 C -0.138 4.138 24 C -0.212 4.212 25 S 0.118 5.882 26 H 0.012 0.988 27 H 0.083 0.917 28 H 0.018 0.982 29 H 0.017 0.983 30 H 0.073 0.927 31 H 0.023 0.977 32 H 0.258 0.742 33 H 0.055 0.945 34 H 0.012 0.988 35 H 0.339 0.661 36 H 0.070 0.930 37 H 0.030 0.970 38 H 0.370 0.630 39 H 0.058 0.942 40 H 0.054 0.946 41 H 0.068 0.932 42 H 0.059 0.941 43 H 0.141 0.859 44 H 0.141 0.859 45 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.688 -2.404 27.302 27.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.068 3.932 3 C -0.177 4.177 4 C -0.545 4.545 5 H 0.069 0.931 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.717 3.283 9 H -0.209 1.209 10 H -0.213 1.213 11 H -0.201 1.201 12 C -0.053 4.053 13 N -0.307 5.307 14 C -0.101 4.101 15 C 0.055 3.945 16 H 0.119 0.881 17 O -0.340 6.340 18 C -0.047 4.047 19 O -0.288 6.288 20 C 0.054 3.946 21 C -0.299 4.299 22 C -0.150 4.150 23 C -0.169 4.169 24 C -0.348 4.348 25 S 0.382 5.618 26 H 0.031 0.969 27 H 0.102 0.898 28 H 0.037 0.963 29 H 0.036 0.964 30 H 0.092 0.908 31 H 0.042 0.958 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.030 0.970 35 H 0.159 0.841 36 H 0.089 0.911 37 H 0.048 0.952 38 H 0.216 0.784 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.086 0.914 42 H 0.077 0.923 43 H 0.158 0.842 44 H 0.159 0.841 45 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 1.686 -0.680 27.002 27.063 hybrid contribution -0.778 -2.614 -0.652 2.804 sum 0.908 -3.294 26.350 26.571 Atomic orbital electron populations 1.21839 0.98510 0.98293 1.00411 1.18097 0.92137 0.93158 0.89843 1.21632 0.97681 0.98113 1.00246 1.21098 1.31168 1.11763 0.90497 0.93077 1.24895 0.95119 0.94955 0.98698 1.69836 1.36793 1.22698 1.22901 0.86658 0.79148 0.79405 0.83089 1.20909 1.21292 1.20115 1.22177 0.98873 0.94283 0.89930 1.60469 1.16549 1.53272 1.00456 1.22521 1.00705 0.95397 0.91459 1.21865 1.00005 0.82860 0.89749 0.88078 1.86656 1.26194 1.24563 1.96628 1.23344 0.97456 0.96997 0.86921 1.88071 1.69892 1.58243 1.12584 1.20702 0.97134 0.95154 0.81623 1.24167 1.00596 1.02019 1.03096 1.20185 0.95419 1.01921 0.97463 1.20179 1.01401 0.96014 0.99296 1.25714 0.98630 1.04612 1.05826 1.84341 1.21045 1.27493 1.28971 0.96938 0.89795 0.96300 0.96408 0.90805 0.95819 0.93182 0.92641 0.97004 0.84115 0.91109 0.95189 0.78399 0.92416 0.92807 0.91439 0.92298 0.84154 0.84138 0.81774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.18 7.92 37.16 0.29 -2.88 16 2 C 0.07 1.66 0.57 -155.66 -0.09 1.58 16 3 C -0.12 -2.95 8.09 37.15 0.30 -2.65 16 4 C -0.51 -13.69 8.01 -34.44 -0.28 -13.96 16 5 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 6 C 0.06 1.75 5.15 -17.82 -0.09 1.66 16 7 N -0.88 -24.68 9.35 55.43 0.52 -24.16 16 8 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 C 0.08 1.57 4.59 -3.82 -0.02 1.55 16 13 N -0.68 -12.02 5.58 -113.78 -0.63 -12.66 16 14 C 0.03 0.41 5.35 -3.82 -0.02 0.39 16 15 C 0.12 1.46 3.46 -26.73 -0.09 1.37 16 16 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 17 O -0.54 -7.80 13.17 -40.11 -0.53 -8.32 16 18 C 0.03 0.31 5.57 37.16 0.21 0.52 16 19 O -0.37 -4.37 10.29 -40.11 -0.41 -4.79 16 20 C 0.13 1.20 6.43 36.01 0.23 1.44 16 21 C -0.18 -1.76 6.14 -36.00 -0.22 -1.98 16 22 C -0.12 -1.05 10.05 -41.21 -0.41 -1.47 16 23 C -0.14 -1.09 10.18 -41.21 -0.42 -1.51 16 24 C -0.21 -1.64 11.23 29.04 0.33 -1.31 16 25 S 0.12 1.05 23.33 -107.50 -2.51 -1.46 16 26 H 0.01 0.26 6.57 -51.93 -0.34 -0.08 16 27 H 0.08 2.23 6.07 -51.93 -0.32 1.91 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 2.01 6.07 -51.93 -0.32 1.69 16 31 H 0.02 0.55 7.60 -51.93 -0.39 0.15 16 32 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.34 6.14 6.77 -39.29 -0.27 5.87 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.37 4.19 9.04 45.56 0.41 4.60 16 39 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 40 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 44 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 45 H 0.16 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 377.22 15.07 5.68 5.68 Total: -1.00 -30.44 377.22 -9.86 -40.30 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -6.68 Total: 6.51 kcal Atomic # 6 Polarization: -17.00 SS G_CDS: -0.28 Total: -17.28 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: -0.12 Total: -36.82 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: -0.94 Total: -13.11 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 1.05 SS G_CDS: -2.51 Total: -1.46 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.44 -9.86 -40.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562999797.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.494 kcal (2) G-P(sol) polarization free energy of solvation -30.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds