Wall clock time and date at job start Fri Apr 10 2020 22:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47126 * 2 1 4 4 C 1.50705 * 109.46545 * 240.00169 * 2 1 3 5 5 H 1.08002 * 119.99351 * 239.99750 * 4 2 1 6 6 C 1.37877 * 120.00102 * 60.00173 * 4 2 1 7 7 N 1.31508 * 120.00153 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99783 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47448 * 89.99980 * 8 6 4 10 10 H 1.48504 * 109.47145 * 209.99837 * 8 6 4 11 11 H 1.48505 * 109.47299 * 329.99753 * 8 6 4 12 12 C 1.52995 * 109.47178 * 120.00338 * 2 1 3 13 13 N 1.46906 * 109.46978 * 299.99807 * 12 2 1 14 14 C 1.46901 * 110.99793 * 180.02562 * 13 12 2 15 15 C 1.53000 * 109.46769 * 180.02562 * 14 13 12 16 16 H 1.08992 * 109.47399 * 59.99697 * 15 14 13 17 17 O 1.42900 * 109.47041 * 299.99294 * 15 14 13 18 18 C 1.53001 * 109.46886 * 180.02562 * 15 14 13 19 19 O 1.42897 * 109.47209 * 185.00085 * 18 15 14 20 20 C 1.42902 * 114.00486 * 179.97438 * 19 18 15 21 21 C 1.50699 * 109.47486 * 179.97438 * 20 19 18 22 22 C 1.33393 * 125.19868 * 89.99640 * 21 20 19 23 23 C 1.38422 * 114.91766 * 179.97438 * 22 21 20 24 24 C 1.33395 * 114.92151 * 0.02562 * 23 22 21 25 25 S 1.75879 * 125.20252 * 269.69380 * 21 20 19 26 26 H 1.09001 * 109.46911 * 299.99928 * 1 2 3 27 27 H 1.08997 * 109.47727 * 59.99909 * 1 2 3 28 28 H 1.09002 * 109.47026 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47367 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.47425 * 300.00031 * 3 2 1 31 31 H 1.09001 * 109.47167 * 60.00229 * 3 2 1 32 32 H 0.97003 * 120.00239 * 180.02562 * 7 6 4 33 33 H 1.08995 * 109.46859 * 180.02562 * 12 2 1 34 34 H 1.09002 * 109.47639 * 59.99767 * 12 2 1 35 35 H 1.00899 * 110.99995 * 56.04730 * 13 12 2 36 36 H 1.09002 * 109.47401 * 59.99808 * 14 13 12 37 37 H 1.09001 * 109.46874 * 299.99821 * 14 13 12 38 38 H 0.96698 * 114.00516 * 300.00983 * 17 15 14 39 39 H 1.09008 * 109.46864 * 304.99696 * 18 15 14 40 40 H 1.09000 * 109.47679 * 64.99728 * 18 15 14 41 41 H 1.09000 * 109.46665 * 299.99657 * 20 19 18 42 42 H 1.09000 * 109.46977 * 59.99153 * 20 19 18 43 43 H 1.07998 * 122.54383 * 359.95738 * 22 21 20 44 44 H 1.08001 * 122.53974 * 180.02562 * 23 22 21 45 45 H 1.08002 * 125.20325 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.6531 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3222 -1.1195 -4.0080 9 1 1.3445 -2.1615 -4.4124 10 1 2.4870 -0.1402 -5.1121 11 1 3.6306 -1.7566 -3.7121 12 6 2.0400 -0.7213 1.2492 13 7 1.5504 -0.0288 2.4487 14 6 2.0219 -0.6947 3.6702 15 6 1.4923 0.0532 4.8955 16 1 0.4025 0.0523 4.8787 17 8 1.9680 1.4005 4.8735 18 6 1.9839 -0.6399 6.1678 19 8 1.3960 -0.0129 7.3094 20 6 1.7912 -0.5880 8.5565 21 6 1.1157 0.1473 9.6853 22 6 -0.0697 -0.1693 10.2086 23 6 -0.4893 0.6517 11.2411 24 6 0.3551 1.6352 11.5558 25 16 1.7733 1.5494 10.5190 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.1299 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 0.7080 1.1609 -3.4844 33 1 3.1300 -0.7209 1.2493 34 1 1.6767 -1.7490 1.2492 35 1 0.5438 0.0413 2.4402 36 1 3.1118 -0.6941 3.6868 37 1 1.6587 -1.7222 3.6872 38 1 2.9318 1.4777 4.8866 39 1 1.6971 -1.6913 6.1428 40 1 3.0694 -0.5608 6.2286 41 1 1.5000 -1.6381 8.5807 42 1 2.8726 -0.5082 8.6669 43 1 -0.6576 -1.0027 9.8535 44 1 -1.4292 0.5069 11.7530 45 1 0.1948 2.3689 12.3321 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000562999797.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:52:43 Heat of formation + Delta-G solvation = -84.961204 kcal Electronic energy + Delta-G solvation = -23215.925811 eV Core-core repulsion = 19745.388805 eV Total energy + Delta-G solvation = -3470.537006 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.150 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.85090 -38.96748 -38.32453 -37.37977 -35.19142 -32.98696 -32.14380 -30.44138 -27.50023 -27.34352 -27.19512 -26.29807 -24.25601 -23.83904 -22.57853 -20.30655 -20.21326 -18.37503 -18.23770 -17.69666 -17.50763 -16.99831 -16.72771 -16.36013 -16.19271 -15.68667 -15.47081 -15.13713 -14.55314 -14.17272 -14.08176 -13.93720 -13.78566 -13.67292 -13.39405 -13.18901 -12.99666 -12.88672 -12.67586 -12.56933 -12.52790 -12.44574 -12.10292 -12.05431 -11.74520 -11.67637 -11.30709 -11.16115 -10.72702 -10.63978 -10.58232 -10.33451 -9.71784 -9.41753 -9.11158 -7.95308 -6.12552 -0.02866 0.68497 1.07484 1.42726 1.44787 1.53221 1.75642 2.46501 2.63627 3.26512 3.43777 3.67497 3.83532 4.02643 4.10901 4.16841 4.21143 4.25164 4.37703 4.43890 4.50051 4.59007 4.65282 4.65568 4.72175 4.74322 4.89336 5.03655 5.10399 5.17480 5.19511 5.29991 5.33475 5.45954 5.54735 5.55378 5.70970 5.78219 6.11623 6.18439 6.27406 6.35673 6.49832 6.62120 6.96538 6.97871 7.54950 9.02830 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.041752 B = 0.001900 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.465320 B =14736.338274 C =14814.960228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.057 3.943 3 C -0.104 4.104 4 C -0.524 4.524 5 H 0.047 0.953 6 C 0.019 3.981 7 N -0.904 5.904 8 Si 0.946 3.054 9 H -0.279 1.279 10 H -0.287 1.287 11 H -0.272 1.272 12 C 0.091 3.909 13 N -0.683 5.683 14 C 0.033 3.967 15 C 0.120 3.880 16 H 0.088 0.912 17 O -0.561 6.561 18 C 0.036 3.964 19 O -0.396 6.396 20 C 0.130 3.870 21 C -0.203 4.203 22 C -0.124 4.124 23 C -0.148 4.148 24 C -0.209 4.209 25 S 0.092 5.908 26 H 0.031 0.969 27 H 0.054 0.946 28 H 0.018 0.982 29 H 0.011 0.989 30 H 0.046 0.954 31 H 0.032 0.968 32 H 0.257 0.743 33 H 0.051 0.949 34 H 0.011 0.989 35 H 0.337 0.663 36 H 0.081 0.919 37 H 0.044 0.956 38 H 0.381 0.619 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.085 0.915 42 H 0.068 0.932 43 H 0.152 0.848 44 H 0.163 0.837 45 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.882 -3.474 28.736 28.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.056 3.944 3 C -0.162 4.162 4 C -0.563 4.563 5 H 0.065 0.935 6 C -0.180 4.180 7 N -0.543 5.543 8 Si 0.773 3.227 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.197 1.197 12 C -0.038 4.038 13 N -0.315 5.315 14 C -0.096 4.096 15 C 0.061 3.939 16 H 0.106 0.894 17 O -0.367 6.367 18 C -0.041 4.041 19 O -0.316 6.316 20 C 0.052 3.948 21 C -0.320 4.320 22 C -0.156 4.156 23 C -0.178 4.178 24 C -0.345 4.345 25 S 0.355 5.645 26 H 0.050 0.950 27 H 0.073 0.927 28 H 0.037 0.963 29 H 0.030 0.970 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.029 0.971 35 H 0.156 0.844 36 H 0.099 0.901 37 H 0.063 0.937 38 H 0.230 0.770 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.103 0.897 42 H 0.086 0.914 43 H 0.170 0.830 44 H 0.180 0.820 45 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 1.893 -1.759 28.454 28.572 hybrid contribution -0.868 -2.252 -1.024 2.621 sum 1.025 -4.011 27.430 27.741 Atomic orbital electron populations 1.21670 0.98316 0.98058 0.99892 1.18168 0.92350 0.92891 0.90946 1.21454 0.97047 0.98482 0.99232 1.21428 1.31159 1.11838 0.91832 0.93505 1.25583 0.95449 0.95676 1.01325 1.69979 1.37484 1.23635 1.23244 0.85746 0.78726 0.78352 0.79869 1.20520 1.21246 1.19663 1.21823 0.98392 0.93842 0.89739 1.60384 1.16372 1.53767 1.00974 1.22562 1.01283 0.95872 0.89921 1.21779 0.99252 0.82261 0.90651 0.89406 1.86613 1.27491 1.25856 1.96775 1.23251 0.98224 0.97297 0.85325 1.88019 1.70560 1.59274 1.13716 1.20848 0.97694 0.95827 0.80390 1.24375 1.01290 1.02550 1.03822 1.20489 0.95264 1.02303 0.97517 1.20479 1.02316 0.95784 0.99221 1.26043 0.97679 1.04968 1.05793 1.84378 1.22309 1.27948 1.29819 0.95008 0.92665 0.96289 0.97013 0.93501 0.94926 0.93376 0.93052 0.97071 0.84394 0.90072 0.93744 0.77027 0.90550 0.91140 0.89697 0.91390 0.83019 0.81965 0.79546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.79 7.92 71.98 0.57 -5.22 16 2 C 0.06 2.76 0.57 -52.93 -0.03 2.73 16 3 C -0.10 -5.19 8.09 71.98 0.58 -4.61 16 4 C -0.52 -28.25 8.01 25.60 0.21 -28.04 16 5 H 0.05 2.50 7.74 -2.91 -0.02 2.48 16 6 C 0.02 1.01 5.15 84.66 0.44 1.45 16 7 N -0.90 -51.08 9.35 21.45 0.20 -50.87 16 8 Si 0.95 43.45 29.54 68.60 2.03 45.47 16 9 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 10 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 11 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 12 C 0.09 3.67 4.59 86.30 0.40 4.07 16 13 N -0.68 -23.32 5.58 -513.88 -2.87 -26.18 16 14 C 0.03 0.84 5.35 86.30 0.46 1.30 16 15 C 0.12 2.84 3.46 30.59 0.11 2.95 16 16 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 17 O -0.56 -15.67 13.17 -144.32 -1.90 -17.57 16 18 C 0.04 0.65 5.57 71.98 0.40 1.05 16 19 O -0.40 -8.79 10.29 -144.32 -1.49 -10.27 16 20 C 0.13 2.16 6.43 71.24 0.46 2.62 16 21 C -0.20 -3.72 6.14 24.59 0.15 -3.57 16 22 C -0.12 -2.03 10.05 21.22 0.21 -1.82 16 23 C -0.15 -2.08 10.18 21.22 0.22 -1.86 16 24 C -0.21 -2.92 11.23 66.72 0.75 -2.17 16 25 S 0.09 1.58 23.33 -56.49 -1.32 0.26 16 26 H 0.03 1.34 6.57 -2.39 -0.02 1.33 16 27 H 0.05 2.95 6.07 -2.39 -0.01 2.94 16 28 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.05 2.57 6.07 -2.38 -0.01 2.56 16 31 H 0.03 1.51 7.60 -2.39 -0.02 1.49 16 32 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 33 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.34 11.74 6.77 -89.69 -0.61 11.13 16 36 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.38 8.15 9.04 -74.06 -0.67 7.48 16 39 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 40 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 44 H 0.16 1.47 8.06 -2.91 -0.02 1.45 16 45 H 0.19 1.60 8.06 -2.91 -0.02 1.58 16 Total: -1.00 -64.55 377.22 -0.72 -65.27 By element: Atomic # 1 Polarization: 25.32 SS G_CDS: -0.30 Total: 25.02 kcal Atomic # 6 Polarization: -36.04 SS G_CDS: 4.91 Total: -31.13 kcal Atomic # 7 Polarization: -74.39 SS G_CDS: -2.67 Total: -77.06 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -3.39 Total: -27.84 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -1.32 Total: 0.26 kcal Total: -64.55 -0.72 -65.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562999797.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.687 kcal (2) G-P(sol) polarization free energy of solvation -64.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds