Wall clock time and date at job start Fri Apr 10 2020 22:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50700 * 119.99783 * 2 1 4 4 C 1.53002 * 109.46895 * 125.00776 * 3 2 1 5 5 H 1.08995 * 109.49851 * 54.99816 * 4 3 2 6 6 C 1.53038 * 109.49576 * 294.93229 * 4 3 2 7 7 C 1.53036 * 109.54004 * 178.71526 * 6 4 3 8 8 C 1.53198 * 109.33641 * 61.32025 * 7 6 4 9 9 N 1.46924 * 108.77304 * 305.37721 * 8 7 6 10 10 S 1.65601 * 120.63032 * 233.62713 * 9 8 7 11 11 O 1.42101 * 104.27604 * 26.05874 * 10 9 8 12 12 O 1.42110 * 104.27391 * 153.91161 * 10 9 8 13 13 C 1.81397 * 104.45162 * 269.98098 * 10 9 8 14 14 C 1.53001 * 109.46761 * 173.93636 * 13 10 9 15 15 C 1.50694 * 115.55401 * 39.91829 * 14 13 10 16 16 H 1.08005 * 119.99717 * 264.78578 * 15 14 13 17 17 C 1.37874 * 120.00121 * 84.78031 * 15 14 13 18 18 N 1.31512 * 120.00020 * 353.00616 * 17 15 14 19 19 Si 1.86805 * 120.00098 * 173.00225 * 17 15 14 20 20 H 1.48505 * 109.47040 * 60.00092 * 19 17 15 21 21 H 1.48498 * 109.47334 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47180 * 300.00397 * 19 17 15 23 23 C 1.53002 * 117.49931 * 254.20659 * 14 13 10 24 24 C 1.52998 * 60.00077 * 252.51206 * 23 14 13 25 25 C 1.46927 * 118.73883 * 53.61487 * 9 8 7 26 26 H 1.08006 * 119.99786 * 180.02562 * 1 2 3 27 27 H 1.08002 * 120.00061 * 359.97438 * 1 2 3 28 28 H 1.08002 * 120.00061 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47161 * 245.00131 * 3 2 1 30 30 H 1.08999 * 109.47324 * 5.00693 * 3 2 1 31 31 H 1.08998 * 109.46171 * 298.70417 * 6 4 3 32 32 H 1.09001 * 109.46245 * 58.66527 * 6 4 3 33 33 H 1.08996 * 109.47461 * 301.36471 * 7 6 4 34 34 H 1.09004 * 109.50094 * 181.28240 * 7 6 4 35 35 H 1.09007 * 109.58113 * 185.59226 * 8 7 6 36 36 H 1.08994 * 109.70617 * 65.24085 * 8 7 6 37 37 H 1.08991 * 109.47204 * 293.93707 * 13 10 9 38 38 H 1.08999 * 109.47110 * 53.93696 * 13 10 9 39 39 H 0.97003 * 120.00115 * 185.02449 * 18 17 15 40 40 H 1.09003 * 117.49835 * 0.02562 * 23 14 13 41 41 H 1.08996 * 117.49885 * 145.02151 * 23 14 13 42 42 H 1.09000 * 117.49920 * 252.50799 * 24 23 14 43 43 H 1.09005 * 117.51675 * 107.47745 * 24 23 14 44 44 H 1.08998 * 109.58763 * 186.60265 * 25 9 8 45 45 H 1.08999 * 109.58972 * 66.17422 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0351 1.3330 1.1815 5 1 3.6829 0.4574 1.1406 6 6 2.2455 1.3233 2.4925 7 6 3.2169 1.3189 3.6750 8 6 4.0717 2.5895 3.6341 9 7 4.7218 2.6799 2.3196 10 16 6.3633 2.8638 2.2010 11 8 6.8673 2.2944 3.4014 12 8 6.6875 2.3079 0.9340 13 6 6.6182 4.6597 2.1922 14 6 8.1173 4.9622 2.2374 15 6 8.9879 4.0604 1.4009 16 1 9.4638 3.2011 1.8499 17 6 9.1769 4.3323 0.0625 18 7 8.4918 5.2942 -0.5162 19 14 10.4062 3.3344 -0.9288 20 1 10.0145 1.9021 -0.9055 21 1 10.4220 3.8209 -2.3317 22 1 11.7596 3.4871 -0.3371 23 6 8.6948 5.4763 3.5577 24 6 8.5388 6.4271 2.3693 25 6 3.8879 2.6038 1.1123 26 1 -0.5400 -0.9354 0.0004 27 1 -0.5400 0.9353 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 2.6212 1.4027 -0.9314 30 1 1.3585 2.1316 0.0897 31 1 1.6159 2.2116 2.5437 32 1 1.6195 0.4319 2.5328 33 1 3.8630 0.4434 3.6112 34 1 2.6541 1.2890 4.6081 35 1 4.8310 2.5444 4.4150 36 1 3.4391 3.4633 3.7898 37 1 6.1893 5.0831 1.2841 38 1 6.1323 5.0999 3.0629 39 1 8.5703 5.4380 -1.4723 40 1 8.0068 5.5986 4.3943 41 1 9.7046 5.1621 3.8216 42 1 9.4459 6.7385 1.8513 43 1 7.7479 7.1754 2.4234 44 1 4.5258 2.5681 0.2293 45 1 3.2382 3.4775 1.0613 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594821011.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:52:49 Heat of formation + Delta-G solvation = -62.297112 kcal Electronic energy + Delta-G solvation = -25428.872469 eV Core-core repulsion = 21959.318252 eV Total energy + Delta-G solvation = -3469.554217 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.150 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.81668 -38.54069 -37.92510 -36.67489 -36.12996 -34.11654 -32.99205 -32.21122 -29.86094 -27.53583 -27.27428 -25.37837 -23.18582 -22.96956 -21.45167 -21.05395 -20.63484 -19.56838 -18.53270 -18.26943 -17.02523 -16.86136 -16.55896 -16.03823 -15.83125 -15.51294 -15.45581 -15.17092 -14.93272 -14.58708 -14.30631 -13.98761 -13.90982 -13.71737 -13.46158 -13.08033 -12.91263 -12.86140 -12.79561 -12.66562 -12.55971 -12.43727 -12.09802 -12.02960 -11.89957 -11.88715 -11.67964 -11.59274 -11.45518 -11.19608 -10.87945 -10.53154 -10.09974 -10.07880 -9.69758 -8.24233 -6.41818 -0.45164 1.34559 1.38665 1.44519 1.48269 2.06871 2.38339 3.05555 3.13114 3.30919 3.50654 3.66617 3.83598 3.95818 4.02623 4.13439 4.25300 4.30039 4.38088 4.43340 4.55136 4.58312 4.58726 4.63209 4.67059 4.80242 4.84445 4.87949 4.92320 4.96994 5.05875 5.09013 5.10454 5.18100 5.24445 5.31544 5.37986 5.41300 5.54259 5.59671 5.66928 5.78550 5.85082 5.96938 6.19557 6.66846 7.35786 8.82730 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.017179 B = 0.004601 C = 0.004012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.543240 B = 6084.171709 C = 6977.983757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.160 4.160 3 C -0.087 4.087 4 C -0.094 4.094 5 H 0.052 0.948 6 C -0.102 4.102 7 C -0.131 4.131 8 C 0.105 3.895 9 N -1.007 6.007 10 S 2.628 3.372 11 O -1.001 7.001 12 O -0.987 6.987 13 C -0.553 4.553 14 C 0.013 3.987 15 C -0.559 4.559 16 H 0.046 0.954 17 C 0.061 3.939 18 N -0.883 5.883 19 Si 0.925 3.075 20 H -0.280 1.280 21 H -0.269 1.269 22 H -0.263 1.263 23 C -0.190 4.190 24 C -0.141 4.141 25 C 0.115 3.885 26 H 0.104 0.896 27 H 0.105 0.895 28 H 0.102 0.898 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.046 0.954 34 H 0.100 0.900 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.121 0.879 38 H 0.132 0.868 39 H 0.267 0.733 40 H 0.102 0.898 41 H 0.079 0.921 42 H 0.064 0.936 43 H 0.087 0.913 44 H 0.070 0.930 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.937 -3.749 4.982 18.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.178 4.178 3 C -0.125 4.125 4 C -0.114 4.114 5 H 0.071 0.929 6 C -0.140 4.140 7 C -0.170 4.170 8 C -0.019 4.019 9 N -0.845 5.845 10 S 2.727 3.273 11 O -0.991 6.991 12 O -0.977 6.977 13 C -0.686 4.686 14 C 0.011 3.989 15 C -0.597 4.597 16 H 0.064 0.936 17 C -0.144 4.144 18 N -0.518 5.518 19 Si 0.749 3.251 20 H -0.206 1.206 21 H -0.194 1.194 22 H -0.188 1.188 23 C -0.227 4.227 24 C -0.180 4.180 25 C -0.010 4.010 26 H 0.122 0.878 27 H 0.123 0.877 28 H 0.120 0.880 29 H 0.086 0.914 30 H 0.104 0.896 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.064 0.936 34 H 0.118 0.882 35 H 0.099 0.901 36 H 0.114 0.886 37 H 0.139 0.861 38 H 0.151 0.849 39 H 0.076 0.924 40 H 0.120 0.880 41 H 0.098 0.902 42 H 0.083 0.917 43 H 0.105 0.895 44 H 0.089 0.911 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -17.299 -4.320 4.769 18.457 hybrid contribution 0.978 0.019 -0.880 1.316 sum -16.321 -4.301 3.889 17.320 Atomic orbital electron populations 1.23967 0.95446 1.02577 1.00610 1.22910 0.96415 0.98088 1.00358 1.20755 0.97822 0.96513 0.97380 1.21427 0.96473 0.96955 0.96562 0.92895 1.21506 0.97010 1.03296 0.92143 1.21898 0.98061 0.96775 1.00311 1.21719 0.97517 1.00074 0.82590 1.57840 1.24961 1.88904 1.12839 1.04175 0.72090 0.78365 0.72639 1.93406 1.79196 1.77055 1.49486 1.93451 1.82406 1.77199 1.44651 1.29890 1.04918 1.24068 1.09723 1.18325 0.88184 0.95950 0.96393 1.20700 1.32275 1.11734 0.94977 0.93629 1.25405 0.96052 0.94686 0.98275 1.69972 1.40193 1.30643 1.10971 0.86126 0.80540 0.79636 0.78753 1.20605 1.19361 1.18809 1.23207 1.02012 1.05684 0.91806 1.22474 1.01672 0.93159 1.00709 1.21643 0.94016 0.99437 0.85900 0.87795 0.87708 0.88037 0.91367 0.89601 0.90058 0.90733 0.93555 0.88173 0.90141 0.88636 0.86117 0.84942 0.92353 0.88009 0.90210 0.91743 0.89470 0.91124 0.88998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.68 14.32 67.78 0.97 -1.71 16 2 C -0.16 -2.77 8.48 25.65 0.22 -2.55 16 3 C -0.09 -1.64 5.14 29.85 0.15 -1.49 16 4 C -0.09 -2.17 2.33 -10.71 -0.02 -2.19 16 5 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 6 C -0.10 -1.86 5.00 30.62 0.15 -1.71 16 7 C -0.13 -2.71 6.08 30.67 0.19 -2.52 16 8 C 0.11 2.57 6.43 86.37 0.56 3.13 16 9 N -1.01 -31.77 3.22 -513.06 -1.65 -33.42 16 10 S 2.63 114.26 4.63 -56.49 -0.26 114.00 16 11 O -1.00 -47.49 16.59 -127.65 -2.12 -49.61 16 12 O -0.99 -51.34 15.72 -127.65 -2.01 -53.35 16 13 C -0.55 -23.15 6.29 71.98 0.45 -22.70 16 14 C 0.01 0.66 1.64 -52.93 -0.09 0.57 16 15 C -0.56 -31.74 6.89 25.60 0.18 -31.56 16 16 H 0.05 2.71 7.82 -2.91 -0.02 2.68 16 17 C 0.06 3.44 5.39 84.65 0.46 3.90 16 18 N -0.88 -49.61 12.96 21.45 0.28 -49.33 16 19 Si 0.92 45.49 29.55 68.60 2.03 47.52 16 20 H -0.28 -14.31 7.11 99.48 0.71 -13.61 16 21 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 22 H -0.26 -12.38 7.11 99.48 0.71 -11.67 16 23 C -0.19 -8.07 9.88 30.59 0.30 -7.77 16 24 C -0.14 -6.36 9.50 30.59 0.29 -6.07 16 25 C 0.11 3.17 5.72 86.36 0.49 3.67 16 26 H 0.10 1.25 8.06 -2.91 -0.02 1.23 16 27 H 0.10 1.28 7.84 -2.91 -0.02 1.26 16 28 H 0.10 1.83 8.06 -2.91 -0.02 1.81 16 29 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.09 1.32 7.79 -2.39 -0.02 1.30 16 31 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.07 1.22 7.34 -2.39 -0.02 1.21 16 33 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 35 H 0.08 2.15 6.86 -2.38 -0.02 2.14 16 36 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.12 5.16 8.14 -2.39 -0.02 5.14 16 38 H 0.13 4.38 7.95 -2.39 -0.02 4.36 16 39 H 0.27 14.31 8.32 -92.71 -0.77 13.54 16 40 H 0.10 3.62 8.08 -2.39 -0.02 3.60 16 41 H 0.08 3.42 8.14 -2.39 -0.02 3.40 16 42 H 0.06 3.13 8.14 -2.39 -0.02 3.11 16 43 H 0.09 3.49 8.14 -2.38 -0.02 3.47 16 44 H 0.07 2.32 6.86 -2.39 -0.02 2.30 16 45 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -70.94 371.60 1.50 -69.44 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: 0.94 Total: 23.74 kcal Atomic # 6 Polarization: -73.29 SS G_CDS: 4.30 Total: -69.00 kcal Atomic # 7 Polarization: -81.38 SS G_CDS: -1.37 Total: -82.75 kcal Atomic # 8 Polarization: -98.83 SS G_CDS: -4.12 Total: -102.96 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Atomic # 16 Polarization: 114.26 SS G_CDS: -0.26 Total: 114.00 kcal Total: -70.94 1.50 -69.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594821011.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.145 kcal (2) G-P(sol) polarization free energy of solvation -70.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds