Wall clock time and date at job start Fri Apr 10 2020 22:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46967 * 2 1 4 4 H 1.08992 * 109.47208 * 55.00122 * 3 2 1 5 5 C 1.50702 * 109.46999 * 175.00250 * 3 2 1 6 6 H 1.08001 * 119.99828 * 120.00065 * 5 3 2 7 7 C 1.37872 * 119.99932 * 299.99776 * 5 3 2 8 8 N 1.31509 * 120.00084 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99753 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47255 * 60.00399 * 9 7 5 11 11 H 1.48500 * 109.46851 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47108 * 299.99985 * 9 7 5 13 13 N 1.46506 * 109.46982 * 295.00171 * 3 2 1 14 14 C 1.34778 * 119.99953 * 85.00389 * 13 3 2 15 15 O 1.21610 * 119.99943 * 359.97438 * 14 13 3 16 16 C 1.47431 * 119.99905 * 179.97438 * 14 13 3 17 17 C 1.46689 * 127.10744 * 359.96794 * 16 14 13 18 18 C 1.35618 * 105.84770 * 180.02562 * 17 16 14 19 19 C 1.47843 * 125.58369 * 180.02562 * 18 17 16 20 20 C 1.39559 * 120.14550 * 359.97438 * 19 18 17 21 21 C 1.37964 * 119.85400 * 180.02562 * 20 19 18 22 22 C 1.38355 * 120.14303 * 359.97438 * 21 20 19 23 23 C 1.38349 * 120.29326 * 359.97438 * 22 21 20 24 24 C 1.37963 * 120.14262 * 0.02562 * 23 22 21 25 25 O 1.34567 * 108.82770 * 0.26975 * 18 17 16 26 26 C 1.33649 * 110.87591 * 359.54881 * 25 18 17 27 27 C 1.50695 * 125.67264 * 180.18415 * 26 25 18 28 28 H 1.08998 * 109.46769 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46746 * 299.99572 * 1 2 3 30 30 H 1.08999 * 109.47320 * 60.00045 * 1 2 3 31 31 H 1.08998 * 109.46746 * 240.00428 * 2 1 3 32 32 H 1.08999 * 109.47320 * 119.99955 * 2 1 3 33 33 H 0.97006 * 120.00197 * 180.02562 * 8 7 5 34 34 H 0.96995 * 119.99945 * 264.99577 * 13 3 2 35 35 H 1.07998 * 127.07759 * 0.03079 * 17 16 14 36 36 H 1.08003 * 120.07311 * 0.03737 * 20 19 18 37 37 H 1.08003 * 119.92462 * 180.25288 * 21 20 19 38 38 H 1.08003 * 119.85082 * 179.97438 * 22 21 20 39 39 H 1.07994 * 119.92852 * 180.02562 * 23 22 21 40 40 H 1.08006 * 120.07150 * 179.97438 * 24 23 22 41 41 H 1.08999 * 109.47567 * 270.30900 * 27 26 25 42 42 H 1.09007 * 109.46925 * 30.30618 * 27 26 25 43 43 H 1.08998 * 109.47625 * 150.30416 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6524 7 6 4.1433 0.8785 1.2279 8 7 3.4063 0.3367 2.1727 9 14 6.0050 0.8814 1.3816 10 1 6.4995 2.2816 1.3820 11 1 6.3979 0.2168 2.6501 12 1 6.5975 0.1474 0.2346 13 7 1.6524 2.0975 -1.2518 14 6 0.4350 2.6644 -1.3669 15 8 -0.3417 2.6319 -0.4318 16 6 0.0452 3.3240 -2.6265 17 6 0.8528 3.4545 -3.8440 18 6 0.0809 4.1321 -4.7297 19 6 0.4735 4.5020 -6.1062 20 6 1.7337 4.1526 -6.5934 21 6 2.0941 4.5014 -7.8787 22 6 1.2089 5.1956 -8.6842 23 6 -0.0423 5.5441 -8.2077 24 6 -0.4150 5.2014 -6.9243 25 8 -1.0988 4.4171 -4.1484 26 6 -1.1423 3.9405 -2.9005 27 6 -2.3058 4.0678 -1.9514 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8294 -0.0611 2.9498 34 1 2.2718 2.1232 -1.9978 35 1 1.8558 3.0866 -4.0026 36 1 2.4254 3.6102 -5.9658 37 1 3.0675 4.2280 -8.2583 38 1 1.4960 5.4666 -9.6895 39 1 -0.7287 6.0856 -8.8416 40 1 -1.3919 5.4744 -6.5533 41 1 -2.2054 4.9872 -1.3746 42 1 -3.2363 4.0946 -2.5187 43 1 -2.3177 3.2136 -1.2744 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599760749.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:53:03 Heat of formation + Delta-G solvation = -11.666869 kcal Electronic energy + Delta-G solvation = -25197.386156 eV Core-core repulsion = 21594.583480 eV Total energy + Delta-G solvation = -3602.802676 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.48263 -39.20479 -38.73076 -35.08010 -33.27002 -32.76832 -32.27398 -31.18847 -30.90466 -30.21204 -27.19246 -26.26980 -23.82511 -23.05921 -22.61746 -22.06208 -20.80144 -19.44404 -19.21996 -18.07770 -16.72727 -16.33274 -16.12455 -15.58892 -15.21731 -15.10180 -14.88099 -14.34244 -14.25252 -13.82901 -13.65863 -13.21720 -13.09981 -12.98744 -12.81231 -12.74279 -12.65120 -11.97684 -11.74612 -11.51331 -11.49702 -11.26610 -11.23118 -10.98351 -10.81719 -10.32243 -10.16218 -10.04402 -9.62985 -9.32150 -9.23362 -9.10018 -9.02075 -8.48756 -7.96269 -7.75196 -6.11538 -4.20889 0.61533 1.13154 1.71444 2.33460 2.66140 3.25961 3.31291 3.32449 3.62649 4.02786 4.11299 4.32190 4.42856 4.60941 4.69715 4.81048 4.95817 5.08268 5.14645 5.19866 5.21959 5.41108 5.48715 5.62255 5.64980 5.73535 5.83595 5.91926 6.12126 6.20474 6.22625 6.31140 6.41312 6.41581 6.48612 6.66242 6.68403 7.06717 7.11406 7.22729 7.38510 7.47413 7.63528 7.75911 7.91916 8.19260 8.69751 8.78839 9.15477 9.46553 10.93789 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.014493 B = 0.003369 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.539052 B = 8309.111119 C = 9827.918976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.699 5.699 14 C 0.574 3.426 15 O -0.549 6.549 16 C -0.227 4.227 17 C -0.156 4.156 18 C 0.013 3.987 19 C -0.006 4.006 20 C -0.100 4.100 21 C -0.114 4.114 22 C -0.120 4.120 23 C -0.118 4.118 24 C -0.106 4.106 25 O -0.174 6.174 26 C 0.072 3.928 27 C -0.079 4.079 28 H 0.022 0.978 29 H 0.050 0.950 30 H 0.038 0.962 31 H 0.030 0.970 32 H 0.099 0.901 33 H 0.265 0.735 34 H 0.387 0.613 35 H 0.158 0.842 36 H 0.131 0.869 37 H 0.129 0.871 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.127 0.873 41 H 0.087 0.913 42 H 0.072 0.928 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.599 8.290 -18.696 21.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.345 5.345 14 C 0.360 3.640 15 O -0.430 6.430 16 C -0.231 4.231 17 C -0.175 4.175 18 C -0.036 4.036 19 C -0.007 4.007 20 C -0.118 4.118 21 C -0.132 4.132 22 C -0.138 4.138 23 C -0.136 4.136 24 C -0.124 4.124 25 O -0.071 6.071 26 C 0.019 3.981 27 C -0.135 4.135 28 H 0.041 0.959 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.117 0.883 33 H 0.075 0.925 34 H 0.220 0.780 35 H 0.176 0.824 36 H 0.149 0.851 37 H 0.146 0.854 38 H 0.141 0.859 39 H 0.143 0.857 40 H 0.145 0.855 41 H 0.105 0.895 42 H 0.091 0.909 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -7.322 8.295 -17.951 21.086 hybrid contribution 1.544 -0.107 -0.286 1.574 sum -5.778 8.189 -18.236 20.808 Atomic orbital electron populations 1.21841 0.98350 0.98022 1.01246 1.21936 0.92659 0.99769 1.02261 1.18798 0.94174 0.89174 0.80852 0.93171 1.21197 0.90731 1.39086 1.06319 0.92181 1.24871 0.98568 0.94791 0.95370 1.69882 1.35201 1.37541 1.09331 0.86523 0.84909 0.78312 0.77447 1.20184 1.21130 1.20169 1.46331 1.14217 1.55477 1.18513 1.17116 0.82934 0.78644 0.85283 1.90713 1.51547 1.61079 1.39644 1.21523 0.95528 1.09105 0.96968 1.22909 1.00653 1.02033 0.91903 1.20061 0.85045 1.04678 0.93767 1.17771 0.94699 0.99574 0.88608 1.21126 0.94820 0.99712 0.96157 1.21072 0.99922 0.98595 0.93649 1.21266 0.94033 0.98543 0.99925 1.21082 0.96746 1.00205 0.95533 1.21269 0.99454 0.97777 0.93933 1.83665 1.35196 1.62963 1.25250 1.22848 0.97345 0.95181 0.82737 1.20610 0.91575 1.05813 0.95462 0.95900 0.93093 0.94257 0.95076 0.88261 0.92507 0.78026 0.82406 0.85125 0.85354 0.85851 0.85689 0.85476 0.89487 0.90882 0.86830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.51 37.16 0.32 -2.75 16 2 C -0.13 -3.11 5.45 -26.73 -0.15 -3.25 16 3 C 0.27 6.84 2.24 -69.08 -0.15 6.69 16 4 H 0.05 1.46 7.58 -51.93 -0.39 1.06 16 5 C -0.53 -14.12 8.73 -34.44 -0.30 -14.43 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -24.63 11.29 55.43 0.63 -24.01 16 9 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 13 N -0.70 -14.87 5.02 -56.01 -0.28 -15.15 16 14 C 0.57 11.82 6.38 -12.52 -0.08 11.74 16 15 O -0.55 -12.50 11.95 5.27 0.06 -12.43 16 16 C -0.23 -3.91 6.30 -103.34 -0.65 -4.56 16 17 C -0.16 -2.29 9.92 -37.11 -0.37 -2.66 16 18 C 0.01 0.17 7.01 -36.59 -0.26 -0.08 16 19 C -0.01 -0.08 5.87 -104.98 -0.62 -0.69 16 20 C -0.10 -1.03 9.55 -39.19 -0.37 -1.40 16 21 C -0.11 -0.98 10.03 -39.64 -0.40 -1.38 16 22 C -0.12 -0.95 10.04 -39.50 -0.40 -1.35 16 23 C -0.12 -1.00 10.03 -39.64 -0.40 -1.40 16 24 C -0.11 -1.10 9.71 -39.19 -0.38 -1.49 16 25 O -0.17 -2.53 10.25 6.70 0.07 -2.46 16 26 C 0.07 1.10 7.36 -34.91 -0.26 0.85 16 27 C -0.08 -1.01 9.88 36.00 0.36 -0.66 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 1.20 7.84 -51.93 -0.41 0.79 16 30 H 0.04 0.86 5.64 -51.93 -0.29 0.57 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 33 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 34 H 0.39 7.31 7.70 -40.82 -0.31 7.00 16 35 H 0.16 1.97 6.92 -52.49 -0.36 1.61 16 36 H 0.13 1.19 6.97 -52.48 -0.37 0.83 16 37 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 38 H 0.12 0.68 8.06 -52.48 -0.42 0.26 16 39 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 40 H 0.13 1.23 7.90 -52.48 -0.41 0.81 16 41 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.07 0.74 8.14 -51.92 -0.42 0.31 16 43 H 0.11 1.67 6.47 -51.93 -0.34 1.34 16 LS Contribution 357.46 15.07 5.39 5.39 Total: -1.00 -30.52 357.46 -9.05 -39.57 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -5.70 Total: 8.65 kcal Atomic # 6 Polarization: -10.90 SS G_CDS: -4.20 Total: -15.10 kcal Atomic # 7 Polarization: -39.50 SS G_CDS: 0.34 Total: -39.16 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: 0.13 Total: -14.89 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.52 -9.05 -39.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599760749.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.903 kcal (2) G-P(sol) polarization free energy of solvation -30.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds