Wall clock time and date at job start Fri Apr 10 2020 22:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46967 * 2 1 4 4 H 1.08992 * 109.47208 * 55.00122 * 3 2 1 5 5 C 1.50702 * 109.46999 * 175.00250 * 3 2 1 6 6 H 1.08001 * 119.99828 * 120.00065 * 5 3 2 7 7 C 1.37872 * 119.99932 * 299.99776 * 5 3 2 8 8 N 1.31509 * 120.00084 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99753 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47255 * 60.00399 * 9 7 5 11 11 H 1.48500 * 109.46851 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47108 * 299.99985 * 9 7 5 13 13 N 1.46506 * 109.46982 * 295.00171 * 3 2 1 14 14 C 1.34778 * 119.99953 * 85.00389 * 13 3 2 15 15 O 1.21610 * 119.99943 * 359.97438 * 14 13 3 16 16 C 1.47431 * 119.99905 * 179.97438 * 14 13 3 17 17 C 1.46689 * 127.10744 * 359.96794 * 16 14 13 18 18 C 1.35618 * 105.84770 * 180.02562 * 17 16 14 19 19 C 1.47843 * 125.58369 * 180.02562 * 18 17 16 20 20 C 1.39559 * 120.14550 * 359.97438 * 19 18 17 21 21 C 1.37964 * 119.85400 * 180.02562 * 20 19 18 22 22 C 1.38355 * 120.14303 * 359.97438 * 21 20 19 23 23 C 1.38349 * 120.29326 * 359.97438 * 22 21 20 24 24 C 1.37963 * 120.14262 * 0.02562 * 23 22 21 25 25 O 1.34567 * 108.82770 * 0.26975 * 18 17 16 26 26 C 1.33649 * 110.87591 * 359.54881 * 25 18 17 27 27 C 1.50695 * 125.67264 * 180.18415 * 26 25 18 28 28 H 1.08998 * 109.46769 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46746 * 299.99572 * 1 2 3 30 30 H 1.08999 * 109.47320 * 60.00045 * 1 2 3 31 31 H 1.08998 * 109.46746 * 240.00428 * 2 1 3 32 32 H 1.08999 * 109.47320 * 119.99955 * 2 1 3 33 33 H 0.97006 * 120.00197 * 180.02562 * 8 7 5 34 34 H 0.96995 * 119.99945 * 264.99577 * 13 3 2 35 35 H 1.07998 * 127.07759 * 0.03079 * 17 16 14 36 36 H 1.08003 * 120.07311 * 0.03737 * 20 19 18 37 37 H 1.08003 * 119.92462 * 180.25288 * 21 20 19 38 38 H 1.08003 * 119.85082 * 179.97438 * 22 21 20 39 39 H 1.07994 * 119.92852 * 180.02562 * 23 22 21 40 40 H 1.08006 * 120.07150 * 179.97438 * 24 23 22 41 41 H 1.08999 * 109.47567 * 270.30900 * 27 26 25 42 42 H 1.09007 * 109.46925 * 30.30618 * 27 26 25 43 43 H 1.08998 * 109.47625 * 150.30416 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6524 7 6 4.1433 0.8785 1.2279 8 7 3.4063 0.3367 2.1727 9 14 6.0050 0.8814 1.3816 10 1 6.4995 2.2816 1.3820 11 1 6.3979 0.2168 2.6501 12 1 6.5975 0.1474 0.2346 13 7 1.6524 2.0975 -1.2518 14 6 0.4350 2.6644 -1.3669 15 8 -0.3417 2.6319 -0.4318 16 6 0.0452 3.3240 -2.6265 17 6 0.8528 3.4545 -3.8440 18 6 0.0809 4.1321 -4.7297 19 6 0.4735 4.5020 -6.1062 20 6 1.7337 4.1526 -6.5934 21 6 2.0941 4.5014 -7.8787 22 6 1.2089 5.1956 -8.6842 23 6 -0.0423 5.5441 -8.2077 24 6 -0.4150 5.2014 -6.9243 25 8 -1.0988 4.4171 -4.1484 26 6 -1.1423 3.9405 -2.9005 27 6 -2.3058 4.0678 -1.9514 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8294 -0.0611 2.9498 34 1 2.2718 2.1232 -1.9978 35 1 1.8558 3.0866 -4.0026 36 1 2.4254 3.6102 -5.9658 37 1 3.0675 4.2280 -8.2583 38 1 1.4960 5.4666 -9.6895 39 1 -0.7287 6.0856 -8.8416 40 1 -1.3919 5.4744 -6.5533 41 1 -2.2054 4.9872 -1.3746 42 1 -3.2363 4.0946 -2.5187 43 1 -2.3177 3.2136 -1.2744 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599760749.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:53:02 Heat of formation + Delta-G solvation = -28.052649 kcal Electronic energy + Delta-G solvation = -25198.096697 eV Core-core repulsion = 21594.583480 eV Total energy + Delta-G solvation = -3603.513217 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.64401 -40.47765 -39.86735 -36.95601 -34.55965 -34.05334 -33.85058 -32.66734 -31.87069 -31.24255 -29.05420 -27.44604 -25.35658 -24.51417 -23.40389 -23.29051 -22.08004 -21.18177 -20.73929 -19.19319 -18.26897 -17.51136 -17.33213 -17.12099 -16.59810 -16.32408 -16.11138 -15.83699 -15.69786 -14.95498 -14.60274 -14.48053 -14.31959 -14.18532 -14.05046 -13.95795 -13.73075 -13.60258 -13.45378 -13.16292 -12.90841 -12.75359 -12.65499 -12.26005 -12.18476 -12.06030 -11.94823 -11.59114 -11.06955 -11.04779 -10.78192 -10.51603 -10.44210 -9.91729 -9.62536 -8.91622 -8.15885 -6.33287 -0.23763 0.44001 0.45124 1.33348 1.44824 1.46710 1.54217 1.55836 2.35756 2.46757 2.65379 2.90451 3.13490 3.31152 3.72841 3.83939 4.01192 4.05923 4.13551 4.28449 4.45227 4.48580 4.50100 4.53161 4.57911 4.61295 4.68622 4.74912 4.82412 4.93148 5.07145 5.09734 5.16885 5.22337 5.26676 5.44290 5.45825 5.52523 5.56150 5.56863 5.62113 5.79610 5.90810 6.00012 6.01827 6.16741 6.73437 6.97996 7.32690 7.54516 8.89371 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.014493 B = 0.003369 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.539052 B = 8309.111119 C = 9827.918976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.121 4.121 3 C 0.281 3.719 4 H 0.002 0.998 5 C -0.551 4.551 6 H 0.069 0.931 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.970 3.030 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.264 1.264 13 N -0.698 5.698 14 C 0.574 3.426 15 O -0.577 6.577 16 C -0.257 4.257 17 C -0.168 4.168 18 C 0.022 3.978 19 C -0.037 4.037 20 C -0.109 4.109 21 C -0.118 4.118 22 C -0.113 4.113 23 C -0.120 4.120 24 C -0.116 4.116 25 O -0.171 6.171 26 C 0.076 3.924 27 C -0.077 4.077 28 H 0.045 0.955 29 H 0.030 0.970 30 H 0.040 0.960 31 H 0.038 0.962 32 H 0.074 0.926 33 H 0.266 0.734 34 H 0.400 0.600 35 H 0.174 0.826 36 H 0.135 0.865 37 H 0.152 0.848 38 H 0.154 0.846 39 H 0.151 0.849 40 H 0.128 0.872 41 H 0.097 0.903 42 H 0.104 0.896 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.831 9.138 -21.861 24.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.160 4.160 3 C 0.178 3.822 4 H 0.020 0.980 5 C -0.590 4.590 6 H 0.087 0.913 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.794 3.206 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.189 1.189 13 N -0.346 5.346 14 C 0.362 3.638 15 O -0.460 6.460 16 C -0.262 4.262 17 C -0.187 4.187 18 C -0.026 4.026 19 C -0.037 4.037 20 C -0.127 4.127 21 C -0.136 4.136 22 C -0.130 4.130 23 C -0.138 4.138 24 C -0.134 4.134 25 O -0.068 6.068 26 C 0.023 3.977 27 C -0.133 4.133 28 H 0.064 0.936 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.234 0.766 35 H 0.192 0.808 36 H 0.153 0.847 37 H 0.170 0.830 38 H 0.171 0.829 39 H 0.168 0.832 40 H 0.146 0.854 41 H 0.115 0.885 42 H 0.123 0.877 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.556 9.155 -21.155 23.966 hybrid contribution 1.251 -0.287 0.563 1.402 sum -5.304 8.868 -20.593 23.040 Atomic orbital electron populations 1.21672 0.96890 0.99155 1.00302 1.21787 0.93882 0.99064 1.01232 1.18394 0.93667 0.89166 0.80993 0.98022 1.21539 0.91423 1.39175 1.06815 0.91267 1.25745 1.03308 0.94286 0.94942 1.70033 1.37128 1.38189 1.09813 0.85439 0.79105 0.78432 0.77613 1.19725 1.21071 1.18907 1.46091 1.15037 1.55787 1.17678 1.17517 0.82147 0.77992 0.86150 1.90692 1.52204 1.62042 1.41079 1.21276 0.97331 1.11061 0.96497 1.23025 1.01494 1.03094 0.91078 1.20525 0.84280 1.03310 0.94521 1.17905 0.96064 1.01878 0.87873 1.21335 0.94363 0.99804 0.97171 1.21420 1.01144 0.98126 0.92920 1.21701 0.93395 0.96870 1.01055 1.21418 0.97564 0.99833 0.94938 1.21430 0.99411 0.97786 0.94788 1.83690 1.35627 1.62707 1.24743 1.23200 0.97315 0.94023 0.83147 1.20655 0.92204 1.05283 0.95155 0.93594 0.95108 0.94055 0.94349 0.90771 0.92528 0.76605 0.80823 0.84667 0.82985 0.82862 0.83150 0.85389 0.88461 0.87728 0.88895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.63 8.51 71.98 0.61 -5.02 16 2 C -0.12 -6.06 5.45 30.60 0.17 -5.89 16 3 C 0.28 14.69 2.24 44.24 0.10 14.79 16 4 H 0.00 0.12 7.58 -2.39 -0.02 0.10 16 5 C -0.55 -29.59 8.73 25.60 0.22 -29.36 16 6 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 7 C 0.02 0.95 5.29 84.65 0.45 1.39 16 8 N -0.91 -52.38 11.29 21.44 0.24 -52.14 16 9 Si 0.97 42.22 29.54 68.60 2.03 44.24 16 10 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 11 H -0.29 -12.30 7.11 99.48 0.71 -11.59 16 12 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 13 N -0.70 -30.56 5.02 -449.35 -2.25 -32.82 16 14 C 0.57 24.42 6.38 86.66 0.55 24.98 16 15 O -0.58 -27.51 11.95 -4.06 -0.05 -27.56 16 16 C -0.26 -9.01 6.30 -19.04 -0.12 -9.13 16 17 C -0.17 -4.91 9.92 23.87 0.24 -4.67 16 18 C 0.02 0.59 7.01 24.21 0.17 0.76 16 19 C -0.04 -0.83 5.87 -20.10 -0.12 -0.95 16 20 C -0.11 -2.04 9.55 22.52 0.22 -1.82 16 21 C -0.12 -1.66 10.03 22.23 0.22 -1.44 16 22 C -0.11 -1.37 10.04 22.32 0.22 -1.15 16 23 C -0.12 -1.66 10.03 22.23 0.22 -1.44 16 24 C -0.12 -2.21 9.71 22.53 0.22 -1.99 16 25 O -0.17 -4.86 10.25 1.07 0.01 -4.85 16 26 C 0.08 2.35 7.36 25.30 0.19 2.54 16 27 C -0.08 -1.96 9.88 71.23 0.70 -1.26 16 28 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.03 1.49 7.84 -2.39 -0.02 1.48 16 30 H 0.04 1.85 5.64 -2.39 -0.01 1.83 16 31 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.07 4.12 5.95 -2.39 -0.01 4.11 16 33 H 0.27 14.44 8.31 -92.70 -0.77 13.67 16 34 H 0.40 15.30 7.70 -92.71 -0.71 14.58 16 35 H 0.17 4.27 6.92 -2.91 -0.02 4.25 16 36 H 0.14 2.29 6.97 -2.91 -0.02 2.27 16 37 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 38 H 0.15 0.95 8.06 -2.91 -0.02 0.93 16 39 H 0.15 1.27 8.06 -2.91 -0.02 1.24 16 40 H 0.13 2.30 7.90 -2.91 -0.02 2.28 16 41 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.10 1.95 8.14 -2.38 -0.02 1.93 16 43 H 0.09 2.81 6.47 -2.39 -0.02 2.80 16 Total: -1.00 -67.91 357.46 4.56 -63.35 By element: Atomic # 1 Polarization: 29.12 SS G_CDS: 0.32 Total: 29.45 kcal Atomic # 6 Polarization: -23.93 SS G_CDS: 4.27 Total: -19.67 kcal Atomic # 7 Polarization: -82.95 SS G_CDS: -2.01 Total: -84.96 kcal Atomic # 8 Polarization: -32.38 SS G_CDS: -0.04 Total: -32.41 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.24 kcal Total: -67.91 4.56 -63.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599760749.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.296 kcal (2) G-P(sol) polarization free energy of solvation -67.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds