Wall clock time and date at job start Fri Apr 10 2020 22:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.46814 * 2 1 4 4 C 1.50696 * 109.46986 * 240.00382 * 2 1 3 5 5 H 1.07999 * 119.99908 * 239.99224 * 4 2 1 6 6 C 1.37883 * 120.00213 * 59.99760 * 4 2 1 7 7 N 1.31512 * 119.99885 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99866 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.46809 * 90.00293 * 8 6 4 10 10 H 1.48505 * 109.47144 * 209.99799 * 8 6 4 11 11 H 1.48494 * 109.47573 * 330.00156 * 8 6 4 12 12 C 1.52998 * 109.47565 * 120.00209 * 2 1 3 13 13 N 1.46506 * 109.46844 * 300.00382 * 12 2 1 14 14 C 1.34776 * 119.99953 * 179.97438 * 13 12 2 15 15 O 1.21600 * 119.99908 * 359.97438 * 14 13 12 16 16 C 1.47466 * 120.00073 * 179.97438 * 14 13 12 17 17 C 1.38713 * 120.36804 * 354.00810 * 16 14 13 18 18 C 1.38915 * 120.64987 * 179.72586 * 17 16 14 19 19 C 1.36281 * 121.17325 * 0.58492 * 18 17 16 20 20 C 1.40585 * 120.12744 * 359.69947 * 19 18 17 21 21 C 1.40500 * 121.11655 * 180.02562 * 20 19 18 22 22 C 1.36606 * 119.62258 * 179.97438 * 21 20 19 23 23 O 1.35889 * 119.58644 * 180.02562 * 22 21 20 24 24 C 1.39775 * 120.82508 * 359.97438 * 22 21 20 25 25 C 1.36146 * 120.88147 * 0.02627 * 24 22 21 26 26 C 1.40194 * 119.76355 * 359.97438 * 25 24 22 27 27 H 1.09002 * 109.46858 * 299.99338 * 1 2 3 28 28 H 1.09000 * 109.47242 * 59.99880 * 1 2 3 29 29 H 1.09000 * 109.46629 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46424 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47314 * 300.00076 * 3 2 1 32 32 H 1.09002 * 109.46867 * 60.00667 * 3 2 1 33 33 H 0.96994 * 119.99783 * 179.97438 * 7 6 4 34 34 H 1.08994 * 109.47417 * 180.02562 * 12 2 1 35 35 H 1.09000 * 109.46794 * 59.99431 * 12 2 1 36 36 H 0.96999 * 120.00223 * 359.97438 * 13 12 2 37 37 H 1.07996 * 119.67149 * 0.02755 * 17 16 14 38 38 H 1.08004 * 119.40787 * 180.26109 * 18 17 16 39 39 H 1.08000 * 119.92965 * 179.72364 * 19 18 17 40 40 H 1.08000 * 120.19280 * 359.97438 * 21 20 19 41 41 H 0.96705 * 114.00076 * 90.00053 * 23 22 21 42 42 H 1.08006 * 119.55922 * 180.02562 * 24 22 21 43 43 H 1.08002 * 120.12404 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5883 -1.1314 6 6 1.6992 -0.2392 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3225 -1.1194 -4.0080 9 1 1.3447 -2.1614 -4.4124 10 1 2.4872 -0.1400 -5.1121 11 1 3.6308 -1.7564 -3.7121 12 6 2.0401 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8770 -0.4915 3.6695 15 8 2.5754 -1.4806 3.7810 16 6 1.3858 0.2039 4.8736 17 6 0.6938 1.4006 4.7590 18 6 0.2236 2.0578 5.8890 19 6 0.4374 1.5551 7.1375 20 6 1.1390 0.3479 7.3015 21 6 1.3707 -0.1894 8.5789 22 6 2.0557 -1.3649 8.7029 23 8 2.2789 -1.8842 9.9386 24 6 2.5288 -2.0406 7.5745 25 6 2.3196 -1.5444 6.3241 26 6 1.6204 -0.3403 6.1611 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9563 0.8901 33 1 0.7095 1.1619 -3.4843 34 1 3.1301 -0.7209 1.2494 35 1 1.6767 -1.7489 1.2491 36 1 0.9943 0.7581 2.3565 37 1 0.5146 1.8231 3.7814 38 1 -0.3165 2.9863 5.7763 39 1 0.0667 2.0850 8.0025 40 1 1.0094 0.3238 9.4578 41 1 1.5838 -2.4826 10.2452 42 1 3.0676 -2.9687 7.6962 43 1 2.6910 -2.0764 5.4607 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601625531.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:53:22 Heat of formation + Delta-G solvation = -53.849196 kcal Electronic energy + Delta-G solvation = -25300.865336 eV Core-core repulsion = 21696.233497 eV Total energy + Delta-G solvation = -3604.631839 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.88387 -40.45700 -38.92518 -38.11073 -36.35815 -35.00422 -33.67078 -32.68180 -30.96012 -29.86027 -27.57609 -27.51258 -26.91190 -24.87464 -23.92917 -23.59386 -21.68156 -20.64652 -19.64530 -18.80918 -18.22943 -17.80673 -17.10514 -16.93847 -16.57295 -16.51326 -16.28298 -15.81998 -15.38382 -15.01521 -14.76110 -14.71501 -14.28113 -14.26123 -13.99255 -13.89633 -13.30258 -13.20582 -13.11393 -12.76161 -12.70107 -12.60298 -12.38104 -12.26569 -12.13826 -12.05043 -11.65835 -11.50313 -11.23652 -10.94017 -10.74183 -10.54361 -10.40743 -10.03600 -9.55779 -8.88004 -8.03241 -6.18766 -0.77370 -0.07083 0.70688 1.42125 1.45230 1.53245 1.73423 2.12752 2.20431 2.47740 3.04893 3.20592 3.26379 3.63101 3.79092 3.82998 3.93013 4.19748 4.24810 4.28885 4.39485 4.45861 4.49052 4.67417 4.75833 4.90162 4.93776 5.01463 5.03712 5.07718 5.11908 5.17937 5.19884 5.31093 5.36619 5.45356 5.52322 5.58020 5.66071 5.66873 5.79902 5.88933 6.14094 6.19947 6.42456 6.58096 6.84450 6.85045 7.22491 7.48957 8.95840 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.027601 B = 0.002845 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.206928 B = 9837.992749 C =10651.611157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.052 3.948 3 C -0.122 4.122 4 C -0.530 4.530 5 H 0.044 0.956 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.944 3.056 9 H -0.279 1.279 10 H -0.282 1.282 11 H -0.277 1.277 12 C 0.147 3.853 13 N -0.701 5.701 14 C 0.547 3.453 15 O -0.578 6.578 16 C -0.146 4.146 17 C -0.067 4.067 18 C -0.122 4.122 19 C -0.069 4.069 20 C -0.060 4.060 21 C -0.132 4.132 22 C 0.104 3.896 23 O -0.506 6.506 24 C -0.144 4.144 25 C -0.123 4.123 26 C -0.042 4.042 27 H 0.037 0.963 28 H 0.064 0.936 29 H 0.018 0.982 30 H 0.018 0.982 31 H 0.064 0.936 32 H 0.037 0.963 33 H 0.261 0.739 34 H 0.041 0.959 35 H 0.041 0.959 36 H 0.408 0.592 37 H 0.143 0.857 38 H 0.169 0.831 39 H 0.171 0.829 40 H 0.164 0.836 41 H 0.411 0.589 42 H 0.136 0.864 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.882 3.496 22.601 23.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.052 3.948 3 C -0.180 4.180 4 C -0.568 4.568 5 H 0.063 0.937 6 C -0.170 4.170 7 N -0.537 5.537 8 Si 0.771 3.229 9 H -0.205 1.205 10 H -0.208 1.208 11 H -0.202 1.202 12 C 0.023 3.977 13 N -0.352 5.352 14 C 0.337 3.663 15 O -0.461 6.461 16 C -0.149 4.149 17 C -0.086 4.086 18 C -0.140 4.140 19 C -0.087 4.087 20 C -0.060 4.060 21 C -0.150 4.150 22 C 0.059 3.941 23 O -0.320 6.320 24 C -0.163 4.163 25 C -0.140 4.140 26 C -0.043 4.043 27 H 0.056 0.944 28 H 0.083 0.917 29 H 0.037 0.963 30 H 0.037 0.963 31 H 0.083 0.917 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.247 0.753 37 H 0.161 0.839 38 H 0.186 0.814 39 H 0.188 0.812 40 H 0.182 0.818 41 H 0.271 0.729 42 H 0.154 0.846 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.970 3.251 22.460 23.038 hybrid contribution 0.011 -0.866 -1.423 1.666 sum -3.959 2.385 21.036 21.538 Atomic orbital electron populations 1.21691 0.97063 0.98748 1.00481 1.18349 0.93278 0.93051 0.90138 1.21695 0.98003 0.97818 1.00509 1.21269 1.31788 1.12213 0.91569 0.93747 1.25433 0.95130 0.95571 1.00905 1.69893 1.36977 1.23177 1.23653 0.85771 0.78642 0.78513 0.79949 1.20501 1.20768 1.20159 1.21346 0.97186 0.95211 0.83909 1.46060 1.52344 1.31767 1.05060 1.18645 0.79879 0.83768 0.84046 1.90513 1.40722 1.28375 1.86483 1.19873 1.04899 0.98314 0.91850 1.21734 0.93277 0.92344 1.01208 1.21192 1.00127 1.01477 0.91175 1.21639 0.94738 0.92876 0.99424 1.18162 0.99509 0.96381 0.91981 1.21478 0.99618 0.96836 0.97044 1.18226 0.97320 0.93994 0.84521 1.84775 1.51335 1.66440 1.29431 1.21456 1.01478 1.01408 0.91940 1.22039 0.97121 0.95701 0.99163 1.18107 0.98527 0.95471 0.92151 0.94450 0.91677 0.96305 0.96287 0.91668 0.94399 0.92971 0.94081 0.94032 0.75346 0.83909 0.81374 0.81197 0.81803 0.72936 0.84599 0.83438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.36 8.08 71.98 0.58 -4.78 16 2 C 0.05 2.41 0.50 -52.93 -0.03 2.38 16 3 C -0.12 -5.37 8.08 71.98 0.58 -4.79 16 4 C -0.53 -27.96 8.01 25.60 0.21 -27.75 16 5 H 0.04 2.40 7.74 -2.91 -0.02 2.38 16 6 C 0.03 1.55 5.15 84.66 0.44 1.98 16 7 N -0.90 -47.45 9.35 21.45 0.20 -47.24 16 8 Si 0.94 42.48 29.54 68.60 2.03 44.51 16 9 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 12 C 0.15 6.30 4.50 86.38 0.39 6.69 16 13 N -0.70 -24.85 4.91 -466.33 -2.29 -27.14 16 14 C 0.55 19.85 7.72 86.68 0.67 20.52 16 15 O -0.58 -24.64 13.38 -4.03 -0.05 -24.69 16 16 C -0.15 -4.29 5.90 -19.87 -0.12 -4.41 16 17 C -0.07 -1.44 9.51 22.55 0.21 -1.22 16 18 C -0.12 -1.87 9.93 21.98 0.22 -1.65 16 19 C -0.07 -1.04 9.75 22.39 0.22 -0.82 16 20 C -0.06 -1.30 5.74 -21.32 -0.12 -1.42 16 21 C -0.13 -2.42 9.68 22.44 0.22 -2.20 16 22 C 0.10 2.15 6.65 22.26 0.15 2.30 16 23 O -0.51 -8.31 13.47 -92.31 -1.24 -9.55 16 24 C -0.14 -3.61 9.89 22.15 0.22 -3.39 16 25 C -0.12 -3.76 9.21 22.26 0.20 -3.55 16 26 C -0.04 -1.20 5.76 -21.10 -0.12 -1.32 16 27 H 0.04 1.36 6.86 -2.39 -0.02 1.34 16 28 H 0.06 3.17 6.07 -2.39 -0.01 3.16 16 29 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.06 3.17 6.07 -2.39 -0.01 3.16 16 32 H 0.04 1.37 6.86 -2.39 -0.02 1.35 16 33 H 0.26 13.26 8.31 -92.71 -0.77 12.49 16 34 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.41 12.39 4.23 -92.71 -0.39 12.00 16 37 H 0.14 2.62 6.42 -2.91 -0.02 2.61 16 38 H 0.17 1.35 8.06 -2.91 -0.02 1.32 16 39 H 0.17 1.20 8.06 -2.91 -0.02 1.18 16 40 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 41 H 0.41 2.52 9.06 -74.05 -0.67 1.85 16 42 H 0.14 3.00 8.06 -2.91 -0.02 2.98 16 43 H 0.15 5.33 4.85 -5.16 -0.03 5.31 16 Total: -1.00 -66.94 347.29 2.54 -64.40 By element: Atomic # 1 Polarization: 23.16 SS G_CDS: -0.01 Total: 23.15 kcal Atomic # 6 Polarization: -27.35 SS G_CDS: 3.91 Total: -23.44 kcal Atomic # 7 Polarization: -72.29 SS G_CDS: -2.09 Total: -74.38 kcal Atomic # 8 Polarization: -32.94 SS G_CDS: -1.30 Total: -34.24 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Total: -66.94 2.54 -64.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601625531.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.549 kcal (2) G-P(sol) polarization free energy of solvation -66.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds