Wall clock time and date at job start Fri Apr 10 2020 22:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 5 5 O 1.21278 * 119.99985 * 119.99692 * 4 2 1 6 6 N 1.34777 * 120.00161 * 300.00385 * 4 2 1 7 7 C 1.46496 * 120.00271 * 180.02562 * 6 4 2 8 8 H 1.09001 * 109.47199 * 324.99664 * 7 6 4 9 9 C 1.53002 * 109.47076 * 204.99915 * 7 6 4 10 10 C 1.50697 * 109.47330 * 64.99420 * 9 7 6 11 11 H 1.08000 * 120.00042 * 0.02562 * 10 9 7 12 12 C 1.37875 * 119.99728 * 179.97438 * 10 9 7 13 13 N 1.31505 * 120.00388 * 0.02562 * 12 10 9 14 14 Si 1.86807 * 119.99545 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47148 * 60.00720 * 14 12 10 16 16 H 1.48501 * 109.47014 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.47310 * 300.00232 * 14 12 10 18 18 C 1.50694 * 109.47347 * 84.99640 * 7 6 4 19 19 C 1.38239 * 120.00031 * 39.72642 * 18 7 6 20 20 C 1.38240 * 119.99819 * 179.80975 * 19 18 7 21 21 C 1.38235 * 120.00002 * 0.39999 * 20 19 18 22 22 C 1.38232 * 119.99904 * 359.85290 * 21 20 19 23 23 C 1.38232 * 120.00281 * 359.96074 * 22 21 20 24 24 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 25 25 C 1.34509 * 125.79040 * 119.71829 * 24 2 1 26 26 C 1.41381 * 106.84080 * 179.89258 * 25 24 2 27 27 C 1.34514 * 106.84032 * 0.37077 * 26 25 24 28 28 O 1.34303 * 125.78597 * 300.02786 * 24 2 1 29 29 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 30 30 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 31 31 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 32 32 H 0.97005 * 119.99463 * 359.97438 * 6 4 2 33 33 H 1.09001 * 109.46658 * 184.99904 * 9 7 6 34 34 H 1.08998 * 109.46554 * 304.99506 * 9 7 6 35 35 H 0.97001 * 120.00564 * 179.97438 * 13 12 10 36 36 H 1.08003 * 119.99802 * 0.02562 * 19 18 7 37 37 H 1.08000 * 119.99683 * 180.23064 * 20 19 18 38 38 H 1.08004 * 119.99466 * 179.83292 * 21 20 19 39 39 H 1.08006 * 119.99605 * 179.97438 * 22 21 20 40 40 H 1.07997 * 120.00075 * 179.97438 * 23 22 21 41 41 H 1.07998 * 126.57891 * 0.02562 * 25 24 2 42 42 H 1.07999 * 126.58290 * 180.16390 * 26 25 24 43 43 H 1.08001 * 125.79052 * 179.75581 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1193 6 7 1.7067 -0.2500 2.4546 7 6 2.1954 -0.9402 3.6508 8 1 2.2325 -2.0130 3.4616 9 6 1.2513 -0.6613 4.8221 10 6 -0.0981 -1.2677 4.5351 11 1 -0.2655 -1.7993 3.6100 12 6 -1.1186 -1.1448 5.4540 13 7 -0.9146 -0.4979 6.5806 14 14 -2.7911 -1.8972 5.0985 15 1 -2.6457 -3.3640 4.9180 16 1 -3.7074 -1.6263 6.2353 17 1 -3.3498 -1.2988 3.8595 18 6 3.5767 -0.4419 3.9892 19 6 3.8778 0.9012 3.8602 20 6 5.1438 1.3589 4.1745 21 6 6.1110 0.4724 4.6098 22 6 5.8114 -0.8713 4.7339 23 6 4.5443 -1.3285 4.4233 24 6 2.0324 -0.7104 -1.2304 25 6 2.8046 -0.1705 -2.1903 26 6 3.0379 -1.1848 -3.1472 27 6 2.3875 -2.2816 -2.7189 28 8 1.7802 -1.9884 -1.5574 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.1492 0.5389 2.5435 33 1 1.6612 -1.1006 5.7315 34 1 1.1451 0.4154 4.9545 35 1 -1.6327 -0.4111 7.2270 36 1 3.1230 1.5933 3.5172 37 1 5.3780 2.4087 4.0772 38 1 7.1009 0.8297 4.8528 39 1 6.5672 -1.5640 5.0736 40 1 4.3104 -2.3784 4.5198 41 1 3.1769 0.8428 -2.2227 42 1 3.6230 -1.0952 -4.0505 43 1 2.3583 -3.2360 -3.2236 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610976348.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:53:36 Heat of formation + Delta-G solvation = -26.592972 kcal Electronic energy + Delta-G solvation = -25794.569294 eV Core-core repulsion = 22191.119373 eV Total energy + Delta-G solvation = -3603.449921 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.48007 -41.10658 -39.75893 -36.82717 -35.28563 -34.66880 -33.74932 -32.31678 -31.68155 -30.54050 -29.41465 -26.86869 -25.44399 -23.79890 -23.41166 -22.67639 -22.41421 -21.27841 -20.76258 -18.79476 -18.38948 -17.89292 -17.64239 -17.01873 -16.76980 -16.45657 -16.27243 -15.74270 -15.66540 -15.04483 -14.83317 -14.56777 -14.21692 -14.16599 -14.05083 -13.67894 -13.65361 -13.50208 -13.44250 -13.27198 -12.92425 -12.67280 -12.60110 -12.50824 -12.43350 -12.14421 -11.87609 -11.58958 -11.33943 -10.86179 -10.74768 -10.55744 -9.99043 -9.75564 -9.52835 -9.35209 -8.19570 -6.29601 0.50799 0.55910 0.83304 1.40181 1.42046 1.49668 1.68083 1.73111 2.16543 2.38456 2.40276 2.97631 3.14788 3.57669 3.80646 3.95972 4.03393 4.04603 4.14763 4.21110 4.24626 4.32126 4.34540 4.45183 4.65419 4.74648 4.76349 4.78496 4.80341 4.96446 5.03664 5.12447 5.15482 5.20037 5.25588 5.30787 5.43417 5.60618 5.61142 5.64166 5.67616 5.78245 5.90684 6.16383 6.20885 6.29589 6.68039 6.82584 7.33365 7.39520 8.90905 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.008520 B = 0.005467 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3285.518988 B = 5120.485049 C = 7700.393028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.023 4.023 3 H 0.157 0.843 4 C 0.511 3.489 5 O -0.582 6.582 6 N -0.691 5.691 7 C 0.201 3.799 8 H 0.052 0.948 9 C 0.039 3.961 10 C -0.529 4.529 11 H 0.052 0.948 12 C 0.015 3.985 13 N -0.925 5.925 14 Si 0.952 3.048 15 H -0.279 1.279 16 H -0.283 1.283 17 H -0.263 1.263 18 C -0.098 4.098 19 C -0.120 4.120 20 C -0.123 4.123 21 C -0.130 4.130 22 C -0.125 4.125 23 C -0.136 4.136 24 C -0.009 4.009 25 C -0.212 4.212 26 C -0.222 4.222 27 C -0.054 4.054 28 O -0.192 6.192 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.042 0.958 32 H 0.411 0.589 33 H 0.001 0.999 34 H 0.016 0.984 35 H 0.264 0.736 36 H 0.126 0.874 37 H 0.149 0.851 38 H 0.151 0.849 39 H 0.142 0.858 40 H 0.108 0.892 41 H 0.169 0.831 42 H 0.173 0.827 43 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.976 5.825 -14.709 18.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.044 4.044 3 H 0.174 0.826 4 C 0.298 3.702 5 O -0.462 6.462 6 N -0.341 5.341 7 C 0.096 3.904 8 H 0.070 0.930 9 C 0.002 3.998 10 C -0.567 4.567 11 H 0.070 0.930 12 C -0.184 4.184 13 N -0.565 5.565 14 Si 0.777 3.223 15 H -0.205 1.205 16 H -0.209 1.209 17 H -0.187 1.187 18 C -0.099 4.099 19 C -0.138 4.138 20 C -0.141 4.141 21 C -0.147 4.147 22 C -0.143 4.143 23 C -0.155 4.155 24 C -0.059 4.059 25 C -0.231 4.231 26 C -0.241 4.241 27 C -0.122 4.122 28 O -0.089 6.089 29 H 0.102 0.898 30 H 0.114 0.886 31 H 0.061 0.939 32 H 0.247 0.753 33 H 0.020 0.980 34 H 0.034 0.966 35 H 0.073 0.927 36 H 0.144 0.856 37 H 0.167 0.833 38 H 0.169 0.831 39 H 0.159 0.841 40 H 0.126 0.874 41 H 0.187 0.813 42 H 0.191 0.809 43 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 9.181 4.988 -14.432 17.817 hybrid contribution -1.160 -0.509 0.291 1.300 sum 8.020 4.479 -14.141 16.863 Atomic orbital electron populations 1.21808 0.90354 1.02757 1.04911 1.20005 0.98896 1.00015 0.85465 0.82551 1.20983 0.79606 0.84338 0.85306 1.90667 1.40092 1.28167 1.87255 1.45796 1.52112 1.31804 1.04357 1.19699 0.89901 0.95093 0.85744 0.92983 1.19122 0.92658 0.96616 0.91438 1.21336 0.96589 1.34974 1.03757 0.92967 1.25722 1.02389 0.95575 0.94751 1.70051 1.34195 1.42909 1.09307 0.85702 0.79648 0.78804 0.78104 1.20454 1.20853 1.18745 1.20448 0.95452 0.95071 0.98954 1.21103 0.97853 0.94379 1.00510 1.21463 0.92730 1.00990 0.98898 1.21474 1.00526 0.92979 0.99771 1.21370 0.95901 0.97049 0.99935 1.21163 0.94340 0.99333 1.00625 1.21947 1.03000 0.82712 0.98274 1.21897 1.02996 1.02488 0.95736 1.22136 1.05716 0.93046 1.03158 1.24760 0.98826 1.02352 0.86215 1.84033 1.59893 1.28688 1.36240 0.89837 0.88650 0.93898 0.75292 0.98034 0.96571 0.92711 0.85621 0.83320 0.83105 0.84062 0.87372 0.81313 0.80922 0.75527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 9.07 71.98 0.65 -2.74 16 2 C -0.02 -0.61 3.13 -12.28 -0.04 -0.65 16 3 H 0.16 2.93 8.10 -2.39 -0.02 2.91 16 4 C 0.51 18.55 7.11 87.66 0.62 19.18 16 5 O -0.58 -26.44 15.46 3.47 0.05 -26.39 16 6 N -0.69 -25.06 3.91 -446.11 -1.75 -26.80 16 7 C 0.20 8.61 2.12 44.24 0.09 8.71 16 8 H 0.05 2.55 7.44 -2.39 -0.02 2.54 16 9 C 0.04 1.95 4.50 29.85 0.13 2.08 16 10 C -0.53 -28.49 8.84 25.60 0.23 -28.27 16 11 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 12 C 0.01 0.80 5.46 84.66 0.46 1.26 16 13 N -0.92 -53.55 13.28 21.44 0.28 -53.27 16 14 Si 0.95 43.13 29.54 68.60 2.03 45.16 16 15 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 16 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 17 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 18 C -0.10 -3.78 4.91 -19.87 -0.10 -3.87 16 19 C -0.12 -3.93 9.33 22.27 0.21 -3.72 16 20 C -0.12 -3.31 10.05 22.27 0.22 -3.08 16 21 C -0.13 -3.33 10.05 22.27 0.22 -3.11 16 22 C -0.12 -3.67 10.05 22.27 0.22 -3.44 16 23 C -0.14 -4.99 9.67 22.27 0.22 -4.77 16 24 C -0.01 -0.26 5.20 24.83 0.13 -0.13 16 25 C -0.21 -5.14 10.78 22.19 0.24 -4.90 16 26 C -0.22 -4.91 10.91 22.19 0.24 -4.66 16 27 C -0.05 -1.32 12.09 66.97 0.81 -0.51 16 28 O -0.19 -6.26 10.35 3.99 0.04 -6.22 16 29 H 0.08 1.89 7.56 -2.39 -0.02 1.87 16 30 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.41 13.05 8.02 -92.70 -0.74 12.30 16 33 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 34 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.26 14.52 8.31 -92.71 -0.77 13.74 16 36 H 0.13 3.73 7.71 -2.91 -0.02 3.71 16 37 H 0.15 2.95 8.06 -2.91 -0.02 2.93 16 38 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 39 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 40 H 0.11 4.03 8.04 -2.91 -0.02 4.01 16 41 H 0.17 3.09 8.06 -2.91 -0.02 3.06 16 42 H 0.17 2.68 8.06 -2.91 -0.02 2.65 16 43 H 0.23 3.62 8.06 -2.91 -0.02 3.60 16 Total: -1.00 -74.07 370.95 5.50 -68.58 By element: Atomic # 1 Polarization: 31.31 SS G_CDS: 0.26 Total: 31.57 kcal Atomic # 6 Polarization: -37.20 SS G_CDS: 4.57 Total: -32.63 kcal Atomic # 7 Polarization: -78.61 SS G_CDS: -1.46 Total: -80.07 kcal Atomic # 8 Polarization: -32.71 SS G_CDS: 0.09 Total: -32.61 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -74.07 5.50 -68.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610976348.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.985 kcal (2) G-P(sol) polarization free energy of solvation -74.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds