Wall clock time and date at job start Fri Apr 10 2020 22:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00430 * 2 1 4 4 H 1.48496 * 109.47263 * 239.99957 * 3 2 1 5 5 H 1.48501 * 109.47050 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47045 * 120.00039 * 3 2 1 7 7 C 1.37882 * 119.99266 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99459 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00171 * 359.97438 * 7 2 1 10 10 O 1.42899 * 110.62685 * 56.89925 * 9 7 2 11 11 C 1.55422 * 110.69674 * 293.62500 * 9 7 2 12 12 C 1.54908 * 101.52379 * 205.97506 * 11 9 7 13 13 N 1.47846 * 104.89238 * 37.06612 * 12 11 9 14 14 C 1.46900 * 111.00020 * 213.57993 * 13 12 11 15 15 C 1.50691 * 109.47462 * 290.12787 * 14 13 12 16 16 C 1.38272 * 119.93354 * 269.72624 * 15 14 13 17 17 C 1.38127 * 120.06801 * 179.76166 * 16 15 14 18 18 C 1.38819 * 119.93163 * 0.48746 * 17 16 15 19 19 N 1.40237 * 120.06642 * 179.78281 * 18 17 16 20 20 C 1.37099 * 126.47303 * 359.70055 * 19 18 17 21 21 C 1.34647 * 106.83484 * 179.83680 * 20 19 18 22 22 N 1.34127 * 108.19664 * 0.41829 * 21 20 19 23 23 C 1.30518 * 109.35134 * 359.73360 * 22 21 20 24 24 C 1.38816 * 119.86960 * 359.76603 * 18 17 16 25 25 C 1.38125 * 119.93555 * 359.97438 * 24 18 17 26 26 C 1.47448 * 108.56553 * 335.84749 * 13 12 11 27 27 H 0.97005 * 119.99569 * 359.97438 * 1 2 3 28 28 H 0.96696 * 114.00308 * 303.10329 * 10 9 7 29 29 H 1.08998 * 111.10859 * 87.90659 * 11 9 7 30 30 H 1.08998 * 111.00401 * 323.99777 * 11 9 7 31 31 H 1.09002 * 110.37460 * 278.18013 * 12 11 9 32 32 H 1.08999 * 110.37548 * 155.95084 * 12 11 9 33 33 H 1.09011 * 109.46590 * 50.12909 * 14 13 12 34 34 H 1.09004 * 109.47038 * 170.12020 * 14 13 12 35 35 H 1.08002 * 119.96857 * 0.02562 * 16 15 14 36 36 H 1.07995 * 120.03703 * 180.27120 * 17 16 15 37 37 H 1.08006 * 126.58051 * 359.97438 * 20 19 18 38 38 H 1.08000 * 125.90436 * 180.11327 * 21 20 19 39 39 H 1.08004 * 125.72417 * 179.97438 * 23 22 21 40 40 H 1.08003 * 120.03451 * 179.97438 * 24 18 17 41 41 H 1.08006 * 119.96656 * 179.97438 * 25 24 18 42 42 H 1.08999 * 109.88737 * 120.39623 * 26 13 12 43 43 H 1.09000 * 109.88899 * 241.58505 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2508 -2.4992 -0.0005 10 8 0.3661 -2.5696 -1.1206 11 6 0.4721 -2.6838 1.3318 12 6 0.3734 -4.2271 1.4213 13 7 1.6620 -4.7216 0.8913 14 6 1.4852 -5.9956 0.1816 15 6 1.1590 -7.0822 1.1734 16 6 2.1776 -7.8171 1.7515 17 6 1.8821 -8.8105 2.6647 18 6 0.5602 -9.0774 2.9941 19 7 0.2567 -10.0884 3.9174 20 6 1.1548 -10.8948 4.5676 21 6 0.4395 -11.7167 5.3586 22 7 -0.8604 -11.4309 5.1930 23 6 -0.9830 -10.4574 4.3323 24 6 -0.4605 -8.3415 2.4081 25 6 -0.1585 -7.3458 1.4997 26 6 2.2280 -3.6935 -0.0012 27 1 -0.4850 0.8401 0.0004 28 1 -0.2687 -1.8417 -1.1668 29 1 -0.5182 -2.2320 1.2735 30 1 1.0352 -2.2792 2.1727 31 1 -0.4528 -4.5907 0.8103 32 1 0.2442 -4.5397 2.4575 33 1 0.6698 -5.9016 -0.5358 34 1 2.4053 -6.2487 -0.3453 35 1 3.2056 -7.6114 1.4921 36 1 2.6783 -9.3812 3.1192 37 1 2.2299 -10.8733 4.4664 38 1 0.8425 -12.4782 6.0099 39 1 -1.9140 -10.0190 4.0045 40 1 -1.4899 -8.5473 2.6622 41 1 -0.9524 -6.7732 1.0431 42 1 3.2023 -3.3757 0.3702 43 1 2.3257 -4.0922 -1.0110 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592149673.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:51:36 Heat of formation + Delta-G solvation = 33.871323 kcal Electronic energy + Delta-G solvation = -25146.855895 eV Core-core repulsion = 21578.320654 eV Total energy + Delta-G solvation = -3568.535241 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.26737 -40.70098 -39.63742 -36.75103 -35.10578 -34.11679 -32.43635 -32.22772 -30.53130 -30.01937 -29.74875 -26.99669 -25.66254 -24.31877 -23.49026 -21.99055 -21.55302 -21.35408 -21.25092 -19.54594 -19.13544 -17.20130 -16.92538 -16.67811 -16.46285 -16.31969 -15.94596 -15.85006 -15.56630 -15.24797 -14.85029 -14.66107 -14.48729 -14.19765 -14.08597 -13.81037 -13.68973 -13.46486 -13.21021 -13.07309 -12.69467 -12.45471 -12.39748 -12.27375 -12.07246 -11.98822 -11.74601 -11.55211 -11.15766 -11.12282 -10.62469 -10.09621 -10.01442 -9.69733 -9.31888 -9.10937 -8.22311 -6.36520 -0.15208 0.33421 1.30199 1.42097 1.42869 1.50374 1.69544 2.10670 2.38480 2.67577 3.02363 3.29487 3.61853 3.70507 3.79707 3.80214 3.90486 3.98553 4.07331 4.25983 4.35452 4.38881 4.46512 4.49177 4.55699 4.61796 4.68884 4.72579 4.79673 4.85120 4.93473 5.00822 5.13327 5.23343 5.28045 5.44555 5.48506 5.54529 5.62300 5.69877 5.79610 5.81063 5.95889 6.18561 6.22553 6.27376 6.67735 6.98420 7.34114 7.43887 8.82843 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.033485 B = 0.002466 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.996000 B =11352.588428 C =11477.752695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.028 3.972 3 Si 0.959 3.041 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.557 4.557 8 H 0.057 0.943 9 C 0.220 3.780 10 O -0.599 6.599 11 C -0.127 4.127 12 C 0.058 3.942 13 N -0.521 5.521 14 C 0.087 3.913 15 C -0.079 4.079 16 C -0.077 4.077 17 C -0.130 4.130 18 C 0.114 3.886 19 N -0.411 5.411 20 C -0.054 4.054 21 C -0.045 4.045 22 N -0.523 5.523 23 C 0.177 3.823 24 C -0.131 4.131 25 C -0.092 4.092 26 C 0.065 3.935 27 H 0.269 0.731 28 H 0.377 0.623 29 H 0.052 0.948 30 H 0.048 0.952 31 H 0.040 0.960 32 H 0.074 0.926 33 H 0.038 0.962 34 H 0.092 0.908 35 H 0.146 0.854 36 H 0.151 0.849 37 H 0.205 0.795 38 H 0.192 0.808 39 H 0.230 0.770 40 H 0.149 0.851 41 H 0.132 0.868 42 H 0.079 0.921 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.751 -18.373 5.336 19.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.172 4.172 3 Si 0.785 3.215 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.595 4.595 8 H 0.075 0.925 9 C 0.180 3.820 10 O -0.408 6.408 11 C -0.166 4.166 12 C -0.070 4.070 13 N -0.245 5.245 14 C -0.040 4.040 15 C -0.080 4.080 16 C -0.096 4.096 17 C -0.149 4.149 18 C 0.021 3.979 19 N -0.089 5.089 20 C -0.184 4.184 21 C -0.190 4.190 22 N -0.240 5.240 23 C -0.104 4.104 24 C -0.151 4.151 25 C -0.111 4.111 26 C -0.063 4.063 27 H 0.079 0.921 28 H 0.228 0.772 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.092 0.908 33 H 0.056 0.944 34 H 0.110 0.890 35 H 0.164 0.836 36 H 0.169 0.831 37 H 0.221 0.779 38 H 0.209 0.791 39 H 0.246 0.754 40 H 0.167 0.833 41 H 0.150 0.850 42 H 0.097 0.903 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.671 -19.259 5.980 20.236 hybrid contribution -0.051 2.290 -0.972 2.488 sum 1.620 -16.970 5.008 17.767 Atomic orbital electron populations 1.69664 1.06844 1.28214 1.50851 1.25696 0.95826 1.02305 0.93403 0.85594 0.78429 0.78792 0.78701 1.19911 1.20771 1.19770 1.21882 0.93636 0.92131 1.51881 0.92474 1.20011 0.86674 0.92488 0.82823 1.86054 1.51649 1.52963 1.50157 1.23031 1.00148 0.93972 0.99404 1.22933 0.90101 0.94669 0.99276 1.63740 1.24120 1.02570 1.34044 1.21270 1.01518 0.87988 0.93264 1.19888 0.93696 0.96239 0.98223 1.21073 1.00072 0.93620 0.94787 1.21043 0.94294 0.99853 0.99708 1.17969 0.95274 0.91214 0.93395 1.43346 1.08313 1.25816 1.31420 1.23282 0.98176 0.96611 1.00360 1.22794 0.88772 1.03590 1.03862 1.70312 1.21124 1.15018 1.17591 1.25763 0.90013 0.96972 0.97622 1.20950 0.99211 0.96610 0.98301 1.21072 0.96495 0.96607 0.96940 1.22713 0.97948 0.90981 0.94648 0.92149 0.77202 0.92884 0.93289 0.94133 0.90762 0.94399 0.89007 0.83587 0.83135 0.77865 0.79057 0.75418 0.83309 0.84998 0.90312 0.93272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.39 10.70 21.45 0.23 -48.16 16 2 C 0.03 1.44 5.28 84.66 0.45 1.89 16 3 Si 0.96 41.63 29.54 68.60 2.03 43.65 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 6 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 7 C -0.56 -29.35 8.21 25.60 0.21 -29.14 16 8 H 0.06 2.98 7.53 -2.91 -0.02 2.96 16 9 C 0.22 10.62 0.86 -10.26 -0.01 10.62 16 10 O -0.60 -30.57 13.09 -148.98 -1.95 -32.52 16 11 C -0.13 -5.72 5.69 32.08 0.18 -5.54 16 12 C 0.06 2.10 5.61 86.77 0.49 2.59 16 13 N -0.52 -18.10 5.15 -890.07 -4.58 -22.68 16 14 C 0.09 2.44 4.73 85.55 0.40 2.84 16 15 C -0.08 -1.86 5.11 -19.85 -0.10 -1.96 16 16 C -0.08 -1.52 9.69 22.25 0.22 -1.30 16 17 C -0.13 -2.30 9.47 22.38 0.21 -2.08 16 18 C 0.11 2.19 6.63 38.07 0.25 2.45 16 19 N -0.41 -7.90 2.99 -350.38 -1.05 -8.95 16 20 C -0.05 -0.91 10.86 83.05 0.90 -0.01 16 21 C -0.04 -0.86 11.85 83.52 0.99 0.13 16 22 N -0.52 -12.29 11.24 -199.71 -2.25 -14.54 16 23 C 0.18 3.52 11.92 180.00 2.14 5.66 16 24 C -0.13 -2.47 9.47 22.38 0.21 -2.26 16 25 C -0.09 -2.00 8.94 22.25 0.20 -1.80 16 26 C 0.06 2.65 6.21 86.65 0.54 3.18 16 27 H 0.27 13.61 8.31 -92.70 -0.77 12.84 16 28 H 0.38 20.00 6.98 -74.06 -0.52 19.49 16 29 H 0.05 2.56 7.77 -2.39 -0.02 2.54 16 30 H 0.05 2.31 8.04 -2.39 -0.02 2.29 16 31 H 0.04 1.45 7.03 -2.39 -0.02 1.43 16 32 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 33 H 0.04 1.14 7.77 -2.38 -0.02 1.12 16 34 H 0.09 2.31 7.95 -2.39 -0.02 2.29 16 35 H 0.15 2.48 8.06 -2.91 -0.02 2.45 16 36 H 0.15 1.90 6.82 -2.91 -0.02 1.88 16 37 H 0.20 2.04 7.15 -2.91 -0.02 2.02 16 38 H 0.19 2.58 8.06 -2.91 -0.02 2.56 16 39 H 0.23 3.04 7.07 -2.91 -0.02 3.02 16 40 H 0.15 2.09 6.77 -2.91 -0.02 2.07 16 41 H 0.13 2.80 7.52 -2.91 -0.02 2.77 16 42 H 0.08 3.23 7.63 -2.39 -0.02 3.21 16 43 H 0.05 1.97 7.46 -2.39 -0.02 1.95 16 Total: -1.00 -62.01 350.65 0.23 -61.77 By element: Atomic # 1 Polarization: 35.64 SS G_CDS: 0.51 Total: 36.16 kcal Atomic # 6 Polarization: -22.02 SS G_CDS: 7.29 Total: -14.73 kcal Atomic # 7 Polarization: -86.68 SS G_CDS: -7.65 Total: -94.33 kcal Atomic # 8 Polarization: -30.57 SS G_CDS: -1.95 Total: -32.52 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.65 kcal Total: -62.01 0.23 -61.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592149673.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.646 kcal (2) G-P(sol) polarization free energy of solvation -62.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds