Wall clock time and date at job start Fri Apr 10 2020 22:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86795 * 120.00477 * 2 1 4 4 H 1.48502 * 109.47337 * 270.00172 * 3 2 1 5 5 H 1.48499 * 109.46991 * 30.00222 * 3 2 1 6 6 H 1.48503 * 109.47097 * 149.99718 * 3 2 1 7 7 C 1.37878 * 119.99845 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00470 * 180.02562 * 7 2 1 9 9 C 1.50710 * 119.99834 * 359.97438 * 7 2 1 10 10 O 1.42899 * 110.87397 * 62.39603 * 9 7 2 11 11 C 1.55141 * 110.99087 * 298.55207 * 9 7 2 12 12 C 1.54319 * 103.01836 * 206.25535 * 11 9 7 13 13 N 1.47441 * 107.23482 * 22.28250 * 12 11 9 14 14 C 1.46899 * 111.00188 * 123.25491 * 13 12 11 15 15 C 1.50703 * 109.46550 * 69.87587 * 14 13 12 16 16 C 1.39928 * 125.87682 * 95.00426 * 15 14 13 17 17 C 1.35318 * 107.92992 * 180.02562 * 16 15 14 18 18 N 1.35231 * 107.71354 * 359.97438 * 17 16 15 19 19 C 1.40180 * 126.05111 * 180.02562 * 18 17 16 20 20 C 1.38841 * 120.06448 * 180.02562 * 19 18 17 21 21 C 1.38121 * 119.93141 * 180.30479 * 20 19 18 22 22 C 1.38280 * 120.06612 * 359.43720 * 21 20 19 23 23 C 1.38287 * 120.13237 * 0.56206 * 22 21 20 24 24 C 1.38111 * 120.06654 * 359.72157 * 23 22 21 25 25 N 1.30876 * 125.87956 * 275.36895 * 15 14 13 26 26 C 1.47846 * 108.56608 * 0.99178 * 13 12 11 27 27 H 0.97010 * 119.99499 * 0.02562 * 1 2 3 28 28 H 0.96698 * 113.99803 * 297.61114 * 10 9 7 29 29 H 1.08999 * 110.70564 * 87.87219 * 11 9 7 30 30 H 1.09004 * 110.85715 * 324.70513 * 11 9 7 31 31 H 1.09000 * 109.88767 * 262.87798 * 12 11 9 32 32 H 1.08997 * 109.89079 * 141.68983 * 12 11 9 33 33 H 1.08999 * 109.47121 * 309.87815 * 14 13 12 34 34 H 1.08996 * 109.47445 * 189.87552 * 14 13 12 35 35 H 1.07999 * 126.03188 * 0.02562 * 16 15 14 36 36 H 1.08002 * 126.14157 * 180.02562 * 17 16 15 37 37 H 1.08002 * 120.03081 * 0.02562 * 20 19 18 38 38 H 1.08004 * 119.96376 * 179.72353 * 21 20 19 39 39 H 1.08000 * 119.93523 * 180.28446 * 22 21 20 40 40 H 1.07997 * 119.96166 * 179.69490 * 23 22 21 41 41 H 1.08006 * 120.03530 * 179.97438 * 24 23 22 42 42 H 1.08997 * 110.37934 * 94.73522 * 26 13 12 43 43 H 1.09006 * 110.37561 * 217.07227 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4399 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2508 -2.4992 -0.0005 10 8 0.4600 -2.6305 -1.1835 11 6 0.3739 -2.6346 1.2721 12 6 0.2537 -4.1627 1.4505 13 7 1.3918 -4.7761 0.7418 14 6 2.1861 -5.6156 1.6486 15 6 1.3953 -6.8444 2.0172 16 6 1.4756 -8.0910 1.3867 17 6 0.6119 -8.9279 2.0069 18 7 0.0060 -8.2342 2.9970 19 6 -0.9604 -8.7327 3.8816 20 6 -1.5033 -7.9064 4.8564 21 6 -2.4507 -8.4022 5.7306 22 6 -2.8672 -9.7168 5.6283 23 6 -2.3284 -10.5422 4.6583 24 6 -1.3764 -10.0538 3.7851 25 7 0.5105 -6.9274 2.9779 26 6 2.2184 -3.6987 0.1572 27 1 -0.4850 0.8402 -0.0004 28 1 -0.2255 -1.9547 -1.2753 29 1 -0.6071 -2.1867 1.1135 30 1 0.8673 -2.1837 2.1331 31 1 -0.6840 -4.5137 1.0197 32 1 0.2959 -4.4169 2.5096 33 1 2.4235 -5.0521 2.5509 34 1 3.1099 -5.9133 1.1526 35 1 2.1142 -8.3409 0.5523 36 1 0.4384 -9.9641 1.7566 37 1 -1.1816 -6.8783 4.9339 38 1 -2.8701 -7.7611 6.4920 39 1 -3.6116 -10.1009 6.3100 40 1 -2.6522 -11.5698 4.5840 41 1 -0.9556 -10.6990 3.0280 42 1 3.0364 -3.4405 0.8296 43 1 2.6068 -4.0032 -0.8147 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592151185.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:51:40 Heat of formation + Delta-G solvation = 50.503469 kcal Electronic energy + Delta-G solvation = -25229.858369 eV Core-core repulsion = 21662.044351 eV Total energy + Delta-G solvation = -3567.814017 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.55089 -40.21387 -39.76157 -36.72572 -34.62114 -34.18037 -32.24084 -32.02623 -30.99669 -29.95741 -29.75894 -27.48094 -25.86892 -24.15155 -23.51999 -22.03153 -21.58554 -21.41597 -20.44223 -19.22524 -18.98723 -17.15118 -17.03263 -16.89314 -16.55179 -16.28944 -15.90928 -15.78969 -15.70413 -15.05978 -14.67651 -14.41531 -14.36692 -14.26817 -14.02273 -13.72174 -13.63813 -13.23412 -13.07147 -12.83377 -12.74576 -12.61093 -12.50643 -12.25840 -12.23047 -12.11666 -11.78875 -11.49776 -11.24745 -11.06056 -10.60254 -10.13117 -10.06113 -10.02083 -9.24467 -8.98530 -8.21195 -6.37406 -0.14365 0.33125 1.18991 1.40828 1.41577 1.42439 1.51938 1.70620 2.38432 2.80627 3.02981 3.22321 3.43034 3.70344 3.86255 3.95095 3.99154 4.04047 4.08926 4.23194 4.29489 4.42051 4.42766 4.42989 4.54537 4.60288 4.72093 4.78062 4.80455 4.90033 4.97674 5.02680 5.05656 5.23347 5.29816 5.38718 5.45401 5.50216 5.51771 5.62057 5.78008 5.82663 5.91979 6.18085 6.20565 6.26083 6.65501 6.68883 7.33900 7.43860 8.84254 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.023940 B = 0.002776 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.297657 B =10084.046363 C =10757.572686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.027 3.973 3 Si 0.962 3.038 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.559 4.559 8 H 0.060 0.940 9 C 0.235 3.765 10 O -0.587 6.587 11 C -0.134 4.134 12 C 0.065 3.935 13 N -0.524 5.524 14 C 0.128 3.872 15 C 0.085 3.915 16 C -0.253 4.253 17 C 0.053 3.947 18 N -0.333 5.333 19 C 0.134 3.866 20 C -0.150 4.150 21 C -0.101 4.101 22 C -0.130 4.130 23 C -0.089 4.089 24 C -0.144 4.144 25 N -0.324 5.324 26 C 0.068 3.932 27 H 0.268 0.732 28 H 0.371 0.629 29 H 0.053 0.947 30 H 0.044 0.956 31 H 0.045 0.955 32 H 0.050 0.950 33 H 0.042 0.958 34 H 0.116 0.884 35 H 0.175 0.825 36 H 0.219 0.781 37 H 0.110 0.890 38 H 0.146 0.854 39 H 0.158 0.842 40 H 0.167 0.833 41 H 0.153 0.847 42 H 0.059 0.941 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.791 -22.556 9.847 24.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.173 4.173 3 Si 0.787 3.213 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.597 4.597 8 H 0.078 0.922 9 C 0.195 3.805 10 O -0.394 6.394 11 C -0.173 4.173 12 C -0.063 4.063 13 N -0.248 5.248 14 C -0.002 4.002 15 C -0.082 4.082 16 C -0.281 4.281 17 C -0.088 4.088 18 N -0.109 5.109 19 C 0.042 3.958 20 C -0.170 4.170 21 C -0.119 4.119 22 C -0.148 4.148 23 C -0.107 4.107 24 C -0.165 4.165 25 N -0.145 5.145 26 C -0.059 4.059 27 H 0.077 0.923 28 H 0.219 0.781 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.134 0.866 35 H 0.192 0.808 36 H 0.235 0.765 37 H 0.129 0.871 38 H 0.163 0.837 39 H 0.176 0.824 40 H 0.184 0.816 41 H 0.171 0.829 42 H 0.077 0.923 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.348 -22.714 10.340 25.180 hybrid contribution 0.586 2.118 0.029 2.198 sum -2.762 -20.596 10.369 23.224 Atomic orbital electron populations 1.69851 1.06994 1.28060 1.50314 1.25747 0.95821 1.02463 0.93293 0.85499 0.78676 0.78832 0.78245 1.20104 1.20807 1.19313 1.21819 0.93670 0.91864 1.52354 0.92216 1.19787 0.87395 0.91662 0.81630 1.86133 1.51366 1.56482 1.45448 1.23069 1.00968 0.93598 0.99693 1.22556 0.93997 0.93788 0.95995 1.63520 1.08808 1.20823 1.31691 1.20689 0.94958 0.89281 0.95251 1.22474 0.95342 0.96887 0.93526 1.21793 1.07518 0.92250 1.06583 1.23221 0.94947 1.00728 0.89907 1.46027 1.31297 1.07971 1.25589 1.18031 0.91321 0.94517 0.91918 1.20988 0.99643 0.99882 0.96482 1.21340 0.95482 0.97019 0.98076 1.21637 1.00648 0.93174 0.99368 1.21429 0.94404 1.01511 0.93353 1.21160 1.00498 0.92047 1.02750 1.77354 1.15564 0.97210 1.24344 1.22888 0.94731 0.89392 0.98912 0.92311 0.78103 0.92808 0.93735 0.93698 0.93193 0.93962 0.86560 0.80802 0.76451 0.87143 0.83669 0.82445 0.81560 0.82901 0.92295 0.90699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.39 10.75 21.45 0.23 -50.16 16 2 C 0.03 1.47 5.29 84.66 0.45 1.92 16 3 Si 0.96 42.85 29.54 68.60 2.03 44.87 16 4 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.56 -30.57 8.27 25.60 0.21 -30.36 16 8 H 0.06 3.20 7.79 -2.91 -0.02 3.18 16 9 C 0.24 12.16 0.87 -10.15 -0.01 12.15 16 10 O -0.59 -32.25 13.16 -148.98 -1.96 -34.21 16 11 C -0.13 -6.69 5.37 31.78 0.17 -6.52 16 12 C 0.06 2.86 6.37 86.65 0.55 3.41 16 13 N -0.52 -21.40 5.15 -890.10 -4.58 -25.98 16 14 C 0.13 4.28 5.11 85.56 0.44 4.72 16 15 C 0.08 2.77 6.23 43.11 0.27 3.04 16 16 C -0.25 -6.58 10.74 22.01 0.24 -6.34 16 17 C 0.05 1.20 10.80 83.49 0.90 2.11 16 18 N -0.33 -9.50 3.80 -187.75 -0.71 -10.21 16 19 C 0.13 3.28 6.69 38.09 0.25 3.54 16 20 C -0.15 -3.75 9.66 22.39 0.22 -3.54 16 21 C -0.10 -1.79 10.04 22.25 0.22 -1.57 16 22 C -0.13 -1.65 10.04 22.29 0.22 -1.43 16 23 C -0.09 -1.05 10.04 22.25 0.22 -0.82 16 24 C -0.14 -2.33 9.46 22.38 0.21 -2.12 16 25 N -0.32 -11.30 11.19 -47.33 -0.53 -11.83 16 26 C 0.07 2.99 5.86 86.77 0.51 3.50 16 27 H 0.27 14.07 8.31 -92.70 -0.77 13.30 16 28 H 0.37 20.73 7.56 -74.06 -0.56 20.17 16 29 H 0.05 2.88 7.54 -2.39 -0.02 2.86 16 30 H 0.04 2.26 8.04 -2.39 -0.02 2.24 16 31 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.05 2.14 6.78 -2.39 -0.02 2.13 16 33 H 0.04 1.46 7.96 -2.39 -0.02 1.44 16 34 H 0.12 3.23 8.07 -2.39 -0.02 3.21 16 35 H 0.17 3.59 8.06 -2.91 -0.02 3.56 16 36 H 0.22 2.61 7.04 -2.91 -0.02 2.59 16 37 H 0.11 3.26 7.70 -2.91 -0.02 3.24 16 38 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 39 H 0.16 1.01 8.06 -2.91 -0.02 0.98 16 40 H 0.17 0.77 8.06 -2.91 -0.02 0.75 16 41 H 0.15 1.60 6.74 -2.91 -0.02 1.58 16 42 H 0.06 2.45 7.70 -2.39 -0.02 2.43 16 43 H 0.07 3.25 8.14 -2.38 -0.02 3.24 16 Total: -1.00 -68.86 355.46 0.01 -68.85 By element: Atomic # 1 Polarization: 36.52 SS G_CDS: 0.46 Total: 36.99 kcal Atomic # 6 Polarization: -23.39 SS G_CDS: 5.08 Total: -18.31 kcal Atomic # 7 Polarization: -92.59 SS G_CDS: -5.59 Total: -98.18 kcal Atomic # 8 Polarization: -32.25 SS G_CDS: -1.96 Total: -34.21 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.87 kcal Total: -68.86 0.01 -68.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592151185.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.351 kcal (2) G-P(sol) polarization free energy of solvation -68.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds