Wall clock time and date at job start Fri Apr 10 2020 22:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99759 * 2 1 4 4 H 1.48502 * 109.47176 * 269.99373 * 3 2 1 5 5 H 1.48492 * 109.47176 * 29.99592 * 3 2 1 6 6 H 1.48502 * 109.47068 * 150.00076 * 3 2 1 7 7 C 1.37875 * 120.00100 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00092 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00057 * 0.02562 * 7 2 1 10 10 O 1.42900 * 110.90351 * 297.58592 * 9 7 2 11 11 C 1.55142 * 110.99048 * 61.45406 * 9 7 2 12 12 C 1.54312 * 103.17714 * 153.83199 * 11 9 7 13 13 N 1.47443 * 107.23612 * 337.62814 * 12 11 9 14 14 C 1.46900 * 111.00227 * 236.74273 * 13 12 11 15 15 C 1.50701 * 109.47223 * 69.87126 * 14 13 12 16 16 C 1.39919 * 125.87996 * 94.71164 * 15 14 13 17 17 C 1.35319 * 107.93171 * 179.89048 * 16 15 14 18 18 N 1.35223 * 107.71229 * 0.37227 * 17 16 15 19 19 C 1.40188 * 126.05186 * 179.76125 * 18 17 16 20 20 C 1.38836 * 120.06841 * 359.70418 * 19 18 17 21 21 C 1.38122 * 119.93329 * 179.78874 * 20 19 18 22 22 C 1.38275 * 120.06503 * 0.48566 * 21 20 19 23 23 C 1.38274 * 120.13472 * 359.74375 * 22 21 20 24 24 C 1.38119 * 120.06680 * 0.02562 * 23 22 21 25 25 N 1.30877 * 125.87850 * 275.02750 * 15 14 13 26 26 C 1.47844 * 108.56494 * 359.01050 * 13 12 11 27 27 H 0.96993 * 120.00152 * 0.02562 * 1 2 3 28 28 H 0.96696 * 113.99925 * 62.41098 * 10 9 7 29 29 H 1.09002 * 110.70816 * 35.36047 * 11 9 7 30 30 H 1.09005 * 110.70106 * 272.30188 * 11 9 7 31 31 H 1.08997 * 109.89327 * 97.03090 * 12 11 9 32 32 H 1.09003 * 109.89220 * 218.21893 * 12 11 9 33 33 H 1.08999 * 109.47147 * 189.87070 * 14 13 12 34 34 H 1.08994 * 109.46907 * 309.87190 * 14 13 12 35 35 H 1.08005 * 126.03726 * 0.02562 * 16 15 14 36 36 H 1.08002 * 126.14344 * 180.13769 * 17 16 15 37 37 H 1.08004 * 120.03253 * 359.97438 * 20 19 18 38 38 H 1.08003 * 119.96159 * 180.25279 * 21 20 19 39 39 H 1.08005 * 119.93028 * 179.72404 * 22 21 20 40 40 H 1.08003 * 119.96758 * 180.02562 * 23 22 21 41 41 H 1.08003 * 120.03095 * 179.97438 * 24 23 22 42 42 H 1.08999 * 110.37744 * 142.93014 * 26 13 12 43 43 H 1.09008 * 110.37208 * 265.26666 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 0.4604 -2.6314 1.1834 11 6 0.3743 -2.6346 -1.2722 12 6 0.2500 -4.1621 -1.4527 13 7 1.3874 -4.7795 -0.7464 14 6 2.1783 -5.6197 -1.6555 15 6 2.9076 -4.7443 -2.6418 16 6 4.2212 -4.2802 -2.5116 17 6 4.5078 -3.5299 -3.6006 18 7 3.4095 -3.5129 -4.3892 19 6 3.2839 -2.8435 -5.6146 20 6 4.3482 -2.1074 -6.1174 21 6 4.2229 -1.4525 -7.3270 22 6 3.0354 -1.5214 -8.0322 23 6 1.9720 -2.2498 -7.5317 24 6 2.0929 -2.9107 -6.3250 25 7 2.4195 -4.2825 -3.7649 26 6 2.2174 -3.7051 -0.1612 27 1 -0.4850 0.8400 -0.0004 28 1 -0.2256 -1.9561 1.2755 29 1 0.8704 -2.1841 -2.1318 30 1 -0.6057 -2.1841 -1.1147 31 1 -0.6880 -4.5114 -1.0212 32 1 0.2900 -4.4148 -2.5122 33 1 2.9007 -6.1981 -1.0796 34 1 1.5153 -6.2979 -2.1926 35 1 4.8893 -4.4864 -1.6884 36 1 5.4443 -3.0308 -3.8018 37 1 5.2743 -2.0493 -5.5646 38 1 5.0519 -0.8831 -7.7206 39 1 2.9383 -1.0048 -8.9757 40 1 1.0460 -2.3021 -8.0850 41 1 1.2618 -3.4792 -5.9344 42 1 2.6064 -4.0121 0.8096 43 1 3.0353 -3.4480 -0.8345 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592151186.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:51:43 Heat of formation + Delta-G solvation = 73.838683 kcal Electronic energy + Delta-G solvation = -26460.155166 eV Core-core repulsion = 22893.353039 eV Total energy + Delta-G solvation = -3566.802126 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.48197 -39.14818 -38.12729 -34.97417 -33.25889 -32.07875 -31.32093 -30.52395 -29.83360 -28.54379 -27.93511 -25.83681 -24.20554 -23.20223 -22.46303 -20.63996 -20.30316 -19.55431 -18.99952 -18.21970 -17.01494 -16.27131 -15.37334 -15.26503 -14.94539 -14.83472 -14.81238 -14.41819 -14.02352 -13.80831 -13.60340 -13.34989 -12.88893 -12.77023 -12.72077 -12.36645 -11.84003 -11.77265 -11.45387 -11.32048 -11.21521 -11.01336 -10.87917 -10.67377 -10.45733 -10.39612 -10.17927 -10.02721 -9.75123 -9.16280 -9.11945 -8.94075 -8.54992 -8.01588 -7.91040 -7.64156 -6.16236 -4.23337 0.82977 1.19149 2.27421 2.50474 2.93358 3.22323 3.29488 3.32972 3.69913 4.32039 4.44468 4.67812 4.75397 4.83870 4.90109 4.99286 5.12259 5.20329 5.25572 5.38973 5.53497 5.69971 5.80027 5.83814 5.88392 5.96794 6.05215 6.11044 6.18836 6.22110 6.31946 6.33985 6.35141 6.60273 6.63589 6.75857 6.80775 6.96024 7.19098 7.28285 7.51732 7.56843 7.66011 7.77782 7.85580 7.88094 8.23559 8.78087 9.44488 9.57983 10.90870 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.011147 B = 0.005312 C = 0.004234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2511.372839 B = 5269.913134 C = 6611.487779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.071 3.929 3 Si 0.895 3.105 4 H -0.282 1.282 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.530 4.530 8 H 0.058 0.942 9 C 0.253 3.747 10 O -0.580 6.580 11 C -0.136 4.136 12 C 0.038 3.962 13 N -0.512 5.512 14 C 0.125 3.875 15 C 0.063 3.937 16 C -0.243 4.243 17 C 0.049 3.951 18 N -0.327 5.327 19 C 0.174 3.826 20 C -0.147 4.147 21 C -0.093 4.093 22 C -0.138 4.138 23 C -0.095 4.095 24 C -0.122 4.122 25 N -0.275 5.275 26 C 0.047 3.953 27 H 0.265 0.735 28 H 0.376 0.624 29 H 0.050 0.950 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.048 0.952 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.152 0.848 36 H 0.173 0.827 37 H 0.128 0.872 38 H 0.130 0.870 39 H 0.125 0.875 40 H 0.130 0.870 41 H 0.137 0.863 42 H 0.068 0.932 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.408 -5.834 -13.582 16.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.131 4.131 3 Si 0.723 3.277 4 H -0.208 1.208 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.568 4.568 8 H 0.076 0.924 9 C 0.212 3.788 10 O -0.388 6.388 11 C -0.175 4.175 12 C -0.089 4.089 13 N -0.235 5.235 14 C -0.006 4.006 15 C -0.107 4.107 16 C -0.271 4.271 17 C -0.093 4.093 18 N -0.102 5.102 19 C 0.081 3.919 20 C -0.168 4.168 21 C -0.112 4.112 22 C -0.157 4.157 23 C -0.113 4.113 24 C -0.142 4.142 25 N -0.095 5.095 26 C -0.080 4.080 27 H 0.075 0.925 28 H 0.225 0.775 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.110 0.890 34 H 0.101 0.899 35 H 0.170 0.830 36 H 0.190 0.810 37 H 0.146 0.854 38 H 0.147 0.853 39 H 0.143 0.857 40 H 0.148 0.852 41 H 0.155 0.845 42 H 0.087 0.913 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.452 -6.506 -13.881 16.632 hybrid contribution 1.191 2.185 -0.283 2.505 sum 7.644 -4.321 -14.164 16.665 Atomic orbital electron populations 1.69740 1.05866 1.27204 1.50598 1.24976 0.94951 0.99247 0.93895 0.86542 0.80031 0.83097 0.78040 1.20769 1.20976 1.19731 1.21497 0.93375 0.90749 1.51229 0.92373 1.19610 0.86811 0.90542 0.81796 1.86136 1.51303 1.56659 1.44660 1.23144 1.02197 0.91892 1.00293 1.22900 0.93713 0.96295 0.96009 1.63948 1.08306 1.22492 1.28712 1.21088 0.95816 0.94075 0.89630 1.23547 0.94264 0.98811 0.94062 1.21498 0.97689 1.06974 1.00957 1.22475 0.92962 1.01377 0.92449 1.45830 1.10176 1.38650 1.15521 1.17591 0.95721 0.94728 0.83865 1.20810 0.98130 0.99956 0.97855 1.20926 0.98038 0.98406 0.93843 1.21170 0.93497 1.00418 1.00606 1.21061 0.99011 0.96213 0.95058 1.20937 0.96661 1.01402 0.95157 1.77401 1.11412 1.11066 1.09625 1.23309 0.95798 0.90350 0.98503 0.92493 0.77529 0.93105 0.90890 0.91803 0.93331 0.89021 0.89943 0.82989 0.80966 0.85374 0.85251 0.85668 0.85247 0.84501 0.91322 0.91883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.69 10.75 55.43 0.60 -24.10 16 2 C 0.07 1.95 5.29 -17.82 -0.09 1.86 16 3 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.53 -14.67 8.28 -34.44 -0.29 -14.96 16 8 H 0.06 1.61 7.79 -52.48 -0.41 1.20 16 9 C 0.25 6.51 0.88 -89.38 -0.08 6.43 16 10 O -0.58 -15.66 13.16 -35.23 -0.46 -16.12 16 11 C -0.14 -3.35 5.36 -24.91 -0.13 -3.48 16 12 C 0.04 0.81 6.46 -2.84 -0.02 0.79 16 13 N -0.51 -10.28 5.41 -232.38 -1.26 -11.53 16 14 C 0.12 2.04 5.84 -4.98 -0.03 2.01 16 15 C 0.06 1.09 5.00 -82.37 -0.41 0.68 16 16 C -0.24 -3.77 8.91 -39.99 -0.36 -4.13 16 17 C 0.05 0.71 10.80 -17.10 -0.18 0.53 16 18 N -0.33 -5.41 3.80 -10.70 -0.04 -5.45 16 19 C 0.17 2.58 6.69 -83.59 -0.56 2.02 16 20 C -0.15 -1.76 9.46 -39.40 -0.37 -2.14 16 21 C -0.09 -0.95 10.04 -39.61 -0.40 -1.34 16 22 C -0.14 -1.37 10.04 -39.55 -0.40 -1.77 16 23 C -0.09 -1.06 10.04 -39.61 -0.40 -1.46 16 24 C -0.12 -1.71 9.66 -39.40 -0.38 -2.09 16 25 N -0.28 -5.01 10.97 33.69 0.37 -4.64 16 26 C 0.05 1.06 5.68 -2.04 -0.01 1.05 16 27 H 0.27 7.01 8.31 -40.82 -0.34 6.68 16 28 H 0.38 10.21 7.56 45.56 0.34 10.55 16 29 H 0.05 1.35 8.03 -51.93 -0.42 0.93 16 30 H 0.07 1.91 7.53 -51.93 -0.39 1.52 16 31 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.05 0.98 6.50 -51.93 -0.34 0.64 16 33 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.08 1.25 8.04 -51.93 -0.42 0.83 16 35 H 0.15 2.03 8.06 -52.48 -0.42 1.60 16 36 H 0.17 1.87 7.04 -52.49 -0.37 1.50 16 37 H 0.13 1.29 6.74 -52.48 -0.35 0.93 16 38 H 0.13 0.95 8.06 -52.48 -0.42 0.52 16 39 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 40 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 41 H 0.14 2.04 7.70 -52.48 -0.40 1.63 16 42 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 43 H 0.06 1.38 4.62 -51.92 -0.24 1.14 16 LS Contribution 349.91 15.07 5.27 5.27 Total: -1.00 -31.38 349.91 -9.74 -41.12 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: -5.09 Total: 15.17 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: -4.11 Total: -16.00 kcal Atomic # 7 Polarization: -45.39 SS G_CDS: -0.33 Total: -45.72 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: -0.46 Total: -16.12 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.38 -9.74 -41.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592151186.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.958 kcal (2) G-P(sol) polarization free energy of solvation -31.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds