Wall clock time and date at job start Fri Apr 10 2020 22:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99749 * 2 1 4 4 H 1.48500 * 109.47094 * 264.79292 * 3 2 1 5 5 H 1.48497 * 109.47405 * 24.79463 * 3 2 1 6 6 H 1.48503 * 109.46961 * 144.79846 * 3 2 1 7 7 C 1.37869 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00243 * 3.21666 * 7 2 1 9 9 C 1.50699 * 120.00130 * 183.21845 * 7 2 1 10 10 O 1.42898 * 110.64693 * 61.95086 * 9 7 2 11 11 C 1.54600 * 110.72869 * 185.10209 * 9 7 2 12 12 C 1.53988 * 105.14312 * 140.31256 * 11 9 7 13 13 N 1.47905 * 107.05772 * 1.23152 * 12 11 9 14 14 C 1.46898 * 110.99918 * 214.15462 * 13 12 11 15 15 C 1.50700 * 109.47383 * 69.86910 * 14 13 12 16 16 C 1.38303 * 119.96969 * 270.28065 * 15 14 13 17 17 C 1.38258 * 120.13294 * 180.23230 * 16 15 14 18 18 C 1.38133 * 120.06755 * 359.48477 * 17 16 15 19 19 C 1.38820 * 119.93296 * 0.26057 * 18 17 16 20 20 N 1.40186 * 120.06507 * 180.02562 * 19 18 17 21 21 C 1.35227 * 126.05367 * 5.00023 * 20 19 18 22 22 C 1.35316 * 107.71463 * 180.02562 * 21 20 19 23 23 C 1.39931 * 107.92774 * 359.97438 * 22 21 20 24 24 N 1.30873 * 108.24244 * 359.71793 * 23 22 21 25 25 C 1.38103 * 119.96555 * 89.99773 * 15 14 13 26 26 C 1.48533 * 105.81700 * 334.66324 * 13 12 11 27 27 H 0.96998 * 120.00096 * 359.97438 * 1 2 3 28 28 H 0.96702 * 114.00254 * 61.69745 * 10 9 7 29 29 H 1.08998 * 110.30410 * 21.39999 * 11 9 7 30 30 H 1.08999 * 110.39259 * 259.27617 * 11 9 7 31 31 H 1.08995 * 109.92236 * 241.87307 * 12 11 9 32 32 H 1.08999 * 109.91838 * 120.57808 * 12 11 9 33 33 H 1.09006 * 109.47053 * 309.87167 * 14 13 12 34 34 H 1.09000 * 109.47353 * 189.87226 * 14 13 12 35 35 H 1.08002 * 119.93015 * 359.97438 * 16 15 14 36 36 H 1.08001 * 119.96368 * 179.76568 * 17 16 15 37 37 H 1.08005 * 120.03135 * 180.27474 * 18 17 16 38 38 H 1.07998 * 126.14339 * 359.97203 * 21 20 19 39 39 H 1.08000 * 126.03979 * 179.97438 * 22 21 20 40 40 H 1.08001 * 125.87614 * 180.02562 * 23 22 21 41 41 H 1.07999 * 120.03567 * 0.05106 * 25 15 14 42 42 H 1.09004 * 110.66612 * 157.64495 * 26 13 12 43 43 H 1.08996 * 110.67316 * 280.77435 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6066 1.9830 -1.3943 5 1 1.3959 2.6820 0.5871 6 1 3.4873 1.4745 0.8071 7 6 2.0044 -1.1940 -0.0005 8 1 1.4658 -2.1285 -0.0534 9 6 3.5096 -1.1951 0.0727 10 8 3.9551 -0.6006 1.2934 11 6 4.0634 -2.6314 -0.0701 12 6 5.3199 -2.4926 -0.9494 13 7 5.4785 -1.0542 -1.2553 14 6 6.0341 -0.8605 -2.6013 15 6 5.0047 -1.2502 -3.6306 16 6 4.9446 -2.5539 -4.0884 17 6 4.0047 -2.9141 -5.0362 18 6 3.1156 -1.9747 -5.5210 19 6 3.1700 -0.6665 -5.0596 20 7 2.2686 0.2890 -5.5493 21 6 1.2411 0.0533 -6.3962 22 6 0.6165 1.2319 -6.6238 23 6 1.2831 2.2210 -5.8921 24 7 2.2690 1.6559 -5.2430 25 6 4.1185 -0.3066 -4.1116 26 6 4.1187 -0.4658 -1.1511 27 1 -0.4850 0.8400 0.0004 28 1 3.6626 -1.0675 2.0881 29 1 3.3295 -3.2730 -0.5578 30 1 4.3281 -3.0354 0.9070 31 1 5.1911 -3.0567 -1.8730 32 1 6.1937 -2.8555 -0.4083 33 1 6.9213 -1.4824 -2.7212 34 1 6.3039 0.1870 -2.7358 35 1 5.6361 -3.2911 -3.7078 36 1 3.9627 -3.9320 -5.3946 37 1 2.3787 -2.2577 -6.2582 38 1 0.9685 -0.9036 -6.8163 39 1 -0.2444 1.3827 -7.2582 40 1 1.0249 3.2693 -5.8635 41 1 4.1634 0.7105 -3.7510 42 1 4.1769 0.6075 -0.9696 43 1 3.5393 -0.6740 -2.0505 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592151242.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:51:48 Heat of formation + Delta-G solvation = 88.379462 kcal Electronic energy + Delta-G solvation = -26902.401642 eV Core-core repulsion = 23336.230051 eV Total energy + Delta-G solvation = -3566.171591 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.44059 -39.84964 -38.04272 -35.23930 -33.35033 -32.30006 -31.92642 -30.43524 -29.43512 -28.98093 -28.17953 -25.79251 -24.02673 -23.28865 -22.39804 -20.74852 -20.58343 -19.86947 -19.48280 -17.88866 -17.31475 -16.18593 -15.59127 -15.45071 -15.21918 -14.95850 -14.85335 -14.52277 -13.94776 -13.80506 -13.58829 -13.47487 -13.24684 -12.75258 -12.74324 -12.59482 -12.02837 -11.97877 -11.65447 -11.50611 -11.31357 -11.16652 -11.07397 -10.63493 -10.54859 -10.37908 -10.20593 -10.05170 -9.87051 -9.08585 -8.90087 -8.74846 -8.60999 -8.31625 -7.97881 -7.85170 -6.13801 -4.24262 0.90367 1.32912 2.25252 2.46909 2.84157 3.40915 3.50069 3.72132 3.78250 4.43983 4.51350 4.63032 4.71809 4.84490 4.92537 5.07091 5.16713 5.22352 5.28816 5.34979 5.41019 5.50308 5.60581 5.68027 5.70162 5.76832 5.91859 5.96386 5.98514 6.01290 6.25952 6.28999 6.32369 6.33464 6.53034 6.57091 6.68004 6.68615 6.76267 6.86669 7.14249 7.25043 7.35937 7.53068 7.69019 7.69858 8.29510 8.83258 9.08232 9.52014 10.96729 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.011260 B = 0.006787 C = 0.004976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.038245 B = 4124.627302 C = 5625.590211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.090 3.910 3 Si 0.866 3.134 4 H -0.281 1.281 5 H -0.301 1.301 6 H -0.224 1.224 7 C -0.551 4.551 8 H 0.074 0.926 9 C 0.224 3.776 10 O -0.568 6.568 11 C -0.144 4.144 12 C 0.032 3.968 13 N -0.503 5.503 14 C 0.079 3.921 15 C -0.090 4.090 16 C -0.119 4.119 17 C -0.094 4.094 18 C -0.141 4.141 19 C 0.160 3.840 20 N -0.317 5.317 21 C 0.053 3.947 22 C -0.264 4.264 23 C 0.051 3.949 24 N -0.284 5.284 25 C -0.099 4.099 26 C 0.037 3.963 27 H 0.265 0.735 28 H 0.359 0.641 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.045 0.955 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.127 0.873 36 H 0.131 0.869 37 H 0.127 0.873 38 H 0.176 0.824 39 H 0.152 0.848 40 H 0.188 0.812 41 H 0.136 0.864 42 H 0.070 0.930 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.222 -3.774 -13.304 15.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.115 4.115 3 Si 0.694 3.306 4 H -0.207 1.207 5 H -0.228 1.228 6 H -0.147 1.147 7 C -0.588 4.588 8 H 0.092 0.908 9 C 0.183 3.817 10 O -0.373 6.373 11 C -0.182 4.182 12 C -0.096 4.096 13 N -0.225 5.225 14 C -0.049 4.049 15 C -0.093 4.093 16 C -0.138 4.138 17 C -0.112 4.112 18 C -0.162 4.162 19 C 0.068 3.932 20 N -0.092 5.092 21 C -0.090 4.090 22 C -0.293 4.293 23 C -0.137 4.137 24 N -0.102 5.102 25 C -0.119 4.119 26 C -0.089 4.089 27 H 0.074 0.926 28 H 0.205 0.795 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.086 0.914 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.145 0.855 36 H 0.149 0.851 37 H 0.145 0.855 38 H 0.193 0.807 39 H 0.170 0.830 40 H 0.204 0.796 41 H 0.154 0.846 42 H 0.088 0.912 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.752 -2.858 -12.509 15.532 hybrid contribution -1.584 -0.026 -0.919 1.831 sum 7.168 -2.883 -13.429 15.493 Atomic orbital electron populations 1.69928 1.06659 1.27414 1.48638 1.24946 0.94551 0.99609 0.92397 0.87202 0.81967 0.82297 0.79123 1.20725 1.22848 1.14697 1.21332 0.88886 0.94742 1.53868 0.90794 1.19826 0.92583 0.86926 0.82323 1.86537 1.78452 1.56730 1.15608 1.22997 0.95767 1.00403 0.99082 1.22924 0.98660 0.89270 0.98742 1.65228 1.23901 1.11914 1.21428 1.21465 0.95017 1.02372 0.86069 1.20566 0.98176 0.93520 0.97033 1.21113 0.99711 0.95599 0.97417 1.20871 0.94710 0.98851 0.96816 1.20718 1.01684 0.90968 1.02859 1.17511 0.91546 0.87159 0.97000 1.45880 1.22597 1.06124 1.34643 1.22589 0.90361 1.00881 0.95184 1.21552 1.06079 0.91794 1.09884 1.24056 0.93593 1.00720 0.95296 1.77520 1.23145 0.87063 1.22512 1.20814 0.94554 1.01049 0.95498 1.23804 0.86903 0.99246 0.98985 0.92579 0.79519 0.91433 0.92057 0.93706 0.91373 0.89942 0.89907 0.85482 0.85125 0.85493 0.80711 0.83006 0.79551 0.84641 0.91194 0.91279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.66 13.96 55.43 0.77 -26.89 16 2 C 0.09 2.65 5.47 -17.82 -0.10 2.55 16 3 Si 0.87 23.05 23.87 -169.99 -4.06 19.00 16 4 H -0.28 -7.50 7.06 56.52 0.40 -7.10 16 5 H -0.30 -8.06 7.11 56.52 0.40 -7.66 16 6 H -0.22 -5.89 5.52 56.52 0.31 -5.58 16 7 C -0.55 -15.52 8.82 -34.44 -0.30 -15.82 16 8 H 0.07 2.24 7.84 -52.49 -0.41 1.83 16 9 C 0.22 5.34 0.78 -89.91 -0.07 5.27 16 10 O -0.57 -13.48 10.46 -35.23 -0.37 -13.85 16 11 C -0.14 -2.88 6.25 -25.38 -0.16 -3.04 16 12 C 0.03 0.55 6.46 -2.76 -0.02 0.53 16 13 N -0.50 -9.55 5.54 -231.89 -1.28 -10.83 16 14 C 0.08 1.23 5.69 -4.98 -0.03 1.20 16 15 C -0.09 -1.42 3.96 -104.65 -0.41 -1.84 16 16 C -0.12 -1.60 8.19 -39.55 -0.32 -1.92 16 17 C -0.09 -1.16 10.04 -39.61 -0.40 -1.55 16 18 C -0.14 -1.92 9.46 -39.40 -0.37 -2.29 16 19 C 0.16 2.69 6.68 -83.59 -0.56 2.13 16 20 N -0.32 -5.41 3.80 -10.70 -0.04 -5.45 16 21 C 0.05 0.72 10.79 -17.10 -0.18 0.54 16 22 C -0.26 -3.40 10.81 -39.99 -0.43 -3.83 16 23 C 0.05 0.74 12.03 -17.33 -0.21 0.53 16 24 N -0.28 -5.20 11.88 30.64 0.36 -4.83 16 25 C -0.10 -1.75 7.10 -39.40 -0.28 -2.03 16 26 C 0.04 0.85 3.90 -1.90 -0.01 0.84 16 27 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 28 H 0.36 7.38 9.09 45.56 0.41 7.80 16 29 H 0.07 1.38 7.70 -51.93 -0.40 0.98 16 30 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 31 H 0.04 0.70 4.83 -51.93 -0.25 0.44 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.08 1.05 8.03 -51.93 -0.42 0.63 16 34 H 0.08 1.26 8.08 -51.93 -0.42 0.84 16 35 H 0.13 1.42 7.14 -52.49 -0.37 1.04 16 36 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 37 H 0.13 1.35 6.77 -52.48 -0.36 1.00 16 38 H 0.18 1.72 7.07 -52.49 -0.37 1.34 16 39 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 40 H 0.19 2.05 8.06 -52.49 -0.42 1.62 16 41 H 0.14 2.65 7.70 -52.49 -0.40 2.25 16 42 H 0.07 1.73 4.81 -51.93 -0.25 1.48 16 43 H 0.07 1.65 4.75 -51.93 -0.25 1.40 16 LS Contribution 338.12 15.07 5.10 5.10 Total: -1.00 -35.34 338.12 -8.20 -43.54 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -4.82 Total: 12.96 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: -3.86 Total: -18.74 kcal Atomic # 7 Polarization: -47.82 SS G_CDS: -0.19 Total: -48.00 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: -0.37 Total: -13.85 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -4.06 Total: 19.00 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.34 -8.20 -43.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592151242.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.918 kcal (2) G-P(sol) polarization free energy of solvation -35.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds