Wall clock time and date at job start Fri Apr 10 2020 22:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99801 * 2 1 4 4 H 1.48501 * 109.47301 * 264.84562 * 3 2 1 5 5 H 1.48500 * 109.47154 * 24.84842 * 3 2 1 6 6 H 1.48497 * 109.47140 * 144.84481 * 3 2 1 7 7 C 1.37873 * 120.00357 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99936 * 6.09667 * 7 2 1 9 9 C 1.50700 * 120.00421 * 186.09305 * 7 2 1 10 10 O 1.42902 * 110.76172 * 62.36002 * 9 7 2 11 11 C 1.55139 * 110.71092 * 185.55626 * 9 7 2 12 12 C 1.54910 * 101.65290 * 154.03627 * 11 9 7 13 13 N 1.47843 * 104.79364 * 322.93261 * 12 11 9 14 14 C 1.46909 * 110.99427 * 146.36517 * 13 12 11 15 15 C 1.50694 * 109.47182 * 49.15413 * 14 13 12 16 16 N 1.30513 * 125.71708 * 269.68984 * 15 14 13 17 17 C 1.34135 * 109.34934 * 179.83573 * 16 15 14 18 18 C 1.34648 * 108.19322 * 0.43269 * 17 16 15 19 19 N 1.35830 * 125.71606 * 90.00273 * 15 14 13 20 20 C 1.40239 * 126.47408 * 359.96195 * 19 15 14 21 21 C 1.38816 * 120.06347 * 309.72288 * 20 19 15 22 22 C 1.38124 * 119.93449 * 179.71940 * 21 20 19 23 23 C 1.38280 * 120.06302 * 0.55778 * 22 21 20 24 24 C 1.38273 * 120.12953 * 359.72597 * 23 22 21 25 25 C 1.38122 * 120.06534 * 359.97438 * 24 23 22 26 26 C 1.47439 * 108.57057 * 24.09539 * 13 12 11 27 27 H 0.96999 * 120.00200 * 359.97438 * 1 2 3 28 28 H 0.96696 * 114.00726 * 56.80036 * 10 9 7 29 29 H 1.09000 * 110.98418 * 35.94707 * 11 9 7 30 30 H 1.09000 * 111.02343 * 272.14744 * 11 9 7 31 31 H 1.09000 * 110.36961 * 204.10264 * 12 11 9 32 32 H 1.09000 * 110.36590 * 81.76131 * 12 11 9 33 33 H 1.08997 * 109.46499 * 169.15900 * 14 13 12 34 34 H 1.09002 * 109.47105 * 289.15354 * 14 13 12 35 35 H 1.08005 * 125.90144 * 180.17814 * 17 16 15 36 36 H 1.08005 * 126.57952 * 179.77997 * 18 17 16 37 37 H 1.08008 * 120.03516 * 359.97438 * 21 20 19 38 38 H 1.07999 * 119.96698 * 180.27683 * 22 21 20 39 39 H 1.08002 * 119.93304 * 179.74128 * 23 22 21 40 40 H 1.08003 * 119.96729 * 179.97438 * 24 23 22 41 41 H 1.08007 * 120.03417 * 180.02562 * 25 24 23 42 42 H 1.09006 * 109.88529 * 118.41209 * 26 13 12 43 43 H 1.09002 * 109.88942 * 239.59912 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6055 1.9836 -1.3944 5 1 1.3963 2.6816 0.5883 6 1 3.4879 1.4741 0.8061 7 6 2.0046 -1.1940 -0.0005 8 1 1.4692 -2.1267 -0.1003 9 6 3.5052 -1.1977 0.1380 10 8 3.8993 -0.6434 1.3947 11 6 4.0680 -2.6338 -0.0286 12 6 5.5071 -2.3501 -0.5267 13 7 5.3748 -1.1747 -1.4136 14 6 6.5664 -0.3191 -1.3350 15 6 7.8034 -1.1649 -1.4943 16 7 8.4676 -1.7336 -0.5254 17 6 9.5081 -2.4086 -1.0362 18 6 9.4984 -2.2475 -2.3729 19 7 8.4175 -1.4582 -2.6699 20 6 8.0203 -1.0343 -3.9463 21 6 6.7046 -1.2009 -4.3563 22 6 6.3150 -0.7772 -5.6119 23 6 7.2368 -0.1980 -6.4645 24 6 8.5494 -0.0361 -6.0611 25 6 8.9434 -0.4523 -4.8044 26 6 4.1627 -0.4293 -1.0276 27 1 -0.4850 0.8400 0.0004 28 1 3.5134 -1.0905 2.1603 29 1 3.5000 -3.1917 -0.7731 30 1 4.0817 -3.1615 0.9251 31 1 5.8912 -3.2046 -1.0838 32 1 6.1610 -2.1193 0.3143 33 1 6.5312 0.4266 -2.1292 34 1 6.5909 0.1817 -0.3672 35 1 10.2314 -2.9789 -0.4722 36 1 10.2059 -2.6612 -3.0763 37 1 5.9852 -1.6576 -3.6926 38 1 5.2904 -0.9025 -5.9297 39 1 6.9308 0.1287 -7.4474 40 1 9.2673 0.4162 -6.7293 41 1 9.9687 -0.3252 -4.4896 42 1 4.4330 0.5758 -0.7035 43 1 3.4751 -0.3767 -1.8718 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592152826.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:51:52 Heat of formation + Delta-G solvation = 68.223511 kcal Electronic energy + Delta-G solvation = -26519.570519 eV Core-core repulsion = 22952.524900 eV Total energy + Delta-G solvation = -3567.045618 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.32884 -39.15145 -38.66831 -35.05062 -34.09305 -32.37919 -31.61513 -31.02931 -29.54570 -28.98791 -28.29889 -25.68960 -23.84020 -23.25934 -23.02677 -21.10992 -20.83240 -19.78452 -19.59302 -17.99838 -17.11169 -16.49286 -16.03693 -15.30553 -15.30236 -14.94781 -14.78159 -14.51508 -14.21052 -13.74753 -13.65867 -13.55156 -13.51525 -12.97602 -12.86115 -12.70524 -12.51917 -11.91359 -11.78747 -11.59808 -11.38477 -11.33371 -10.86382 -10.68989 -10.51885 -10.32583 -10.15229 -10.04839 -9.94298 -9.21296 -8.97903 -8.79437 -8.68289 -8.51302 -8.29979 -7.83069 -6.18783 -4.28330 0.82022 1.12693 2.06904 2.67948 3.12595 3.30014 3.41440 3.48672 3.59132 4.36042 4.43468 4.62051 4.63541 4.66864 4.72314 4.92004 5.12647 5.14088 5.24026 5.24829 5.30849 5.43960 5.51824 5.61847 5.76820 5.78202 5.82485 5.95063 6.00601 6.06851 6.11679 6.15850 6.29603 6.33125 6.40117 6.59118 6.63355 6.68816 6.76923 6.88985 7.20669 7.26644 7.37355 7.48841 7.60300 8.10867 8.25324 8.80253 8.99464 9.45838 10.92141 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.015257 B = 0.004695 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.835256 B = 5962.608765 C = 7061.869062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.088 3.912 3 Si 0.869 3.131 4 H -0.282 1.282 5 H -0.298 1.298 6 H -0.232 1.232 7 C -0.547 4.547 8 H 0.077 0.923 9 C 0.206 3.794 10 O -0.578 6.578 11 C -0.140 4.140 12 C 0.048 3.952 13 N -0.524 5.524 14 C 0.127 3.873 15 C 0.234 3.766 16 N -0.479 5.479 17 C -0.025 4.025 18 C -0.058 4.058 19 N -0.407 5.407 20 C 0.113 3.887 21 C -0.101 4.101 22 C -0.104 4.104 23 C -0.116 4.116 24 C -0.113 4.113 25 C -0.118 4.118 26 C 0.048 3.952 27 H 0.266 0.734 28 H 0.365 0.635 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.084 0.916 34 H 0.071 0.929 35 H 0.171 0.829 36 H 0.173 0.827 37 H 0.156 0.844 38 H 0.134 0.866 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.126 0.874 42 H 0.051 0.949 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.159 -1.782 -11.042 21.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.117 4.117 3 Si 0.696 3.304 4 H -0.208 1.208 5 H -0.225 1.225 6 H -0.156 1.156 7 C -0.584 4.584 8 H 0.095 0.905 9 C 0.166 3.834 10 O -0.385 6.385 11 C -0.178 4.178 12 C -0.080 4.080 13 N -0.250 5.250 14 C -0.002 4.002 15 C -0.027 4.027 16 N -0.197 5.197 17 C -0.172 4.172 18 C -0.189 4.189 19 N -0.086 5.086 20 C 0.022 3.978 21 C -0.120 4.120 22 C -0.122 4.122 23 C -0.134 4.134 24 C -0.131 4.131 25 C -0.138 4.138 26 C -0.079 4.079 27 H 0.075 0.925 28 H 0.212 0.788 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.089 0.911 35 H 0.188 0.812 36 H 0.190 0.810 37 H 0.173 0.827 38 H 0.152 0.848 39 H 0.145 0.855 40 H 0.146 0.854 41 H 0.144 0.856 42 H 0.069 0.931 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 18.100 -1.358 -11.197 21.327 hybrid contribution 0.432 0.659 0.176 0.807 sum 18.531 -0.699 -11.021 21.572 Atomic orbital electron populations 1.69938 1.06614 1.27460 1.48557 1.24970 0.94535 0.99485 0.92681 0.87161 0.81778 0.82624 0.78811 1.20821 1.22530 1.15555 1.21294 0.89114 0.95005 1.53034 0.90493 1.20186 0.93767 0.87873 0.81603 1.86448 1.74417 1.61401 1.16191 1.23195 0.94550 0.99460 1.00609 1.22986 0.97919 0.92224 0.94843 1.63914 1.01195 1.07675 1.52189 1.20694 0.84369 0.92820 1.02323 1.23482 0.97895 1.01765 0.79599 1.70336 1.07045 1.12235 1.30101 1.22294 0.99374 1.04064 0.91455 1.22699 0.94934 1.02770 0.98481 1.43015 1.22285 1.37917 1.05417 1.17772 0.94626 1.01179 0.84208 1.21676 0.94920 0.98459 0.96955 1.21191 1.00231 0.97655 0.93148 1.21315 0.93314 0.98768 0.99994 1.20991 0.96518 1.00139 0.95476 1.21045 0.99310 0.99012 0.94409 1.23349 0.90135 0.95974 0.98401 0.92459 0.78844 0.90800 0.91896 0.92256 0.92172 0.89821 0.91094 0.81200 0.81016 0.82686 0.84792 0.85505 0.85376 0.85644 0.93088 0.88710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.48 13.96 55.43 0.77 -25.71 16 2 C 0.09 2.46 5.47 -17.82 -0.10 2.37 16 3 Si 0.87 21.46 23.96 -169.99 -4.07 17.39 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 5 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 6 H -0.23 -5.70 5.32 56.52 0.30 -5.40 16 7 C -0.55 -14.75 8.69 -34.44 -0.30 -15.04 16 8 H 0.08 2.25 8.03 -52.48 -0.42 1.83 16 9 C 0.21 4.71 0.69 -89.95 -0.06 4.64 16 10 O -0.58 -13.14 10.71 -35.23 -0.38 -13.51 16 11 C -0.14 -2.81 6.22 -24.59 -0.15 -2.96 16 12 C 0.05 0.89 5.52 -2.30 -0.01 0.88 16 13 N -0.52 -9.70 3.97 -232.69 -0.92 -10.63 16 14 C 0.13 2.19 4.44 -4.97 -0.02 2.17 16 15 C 0.23 3.81 6.14 -154.69 -0.95 2.86 16 16 N -0.48 -8.06 10.32 -10.64 -0.11 -8.17 16 17 C -0.02 -0.33 11.85 -17.82 -0.21 -0.54 16 18 C -0.06 -0.71 11.30 -16.47 -0.19 -0.90 16 19 N -0.41 -5.69 2.88 -57.85 -0.17 -5.86 16 20 C 0.11 1.43 5.67 -83.58 -0.47 0.96 16 21 C -0.10 -1.30 8.76 -39.41 -0.35 -1.65 16 22 C -0.10 -1.11 10.04 -39.61 -0.40 -1.50 16 23 C -0.12 -1.03 10.04 -39.55 -0.40 -1.43 16 24 C -0.11 -0.98 10.04 -39.61 -0.40 -1.38 16 25 C -0.12 -1.22 9.70 -39.41 -0.38 -1.60 16 26 C 0.05 1.04 4.34 -2.84 -0.01 1.02 16 27 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 28 H 0.36 7.34 9.07 45.56 0.41 7.76 16 29 H 0.07 1.51 8.04 -51.93 -0.42 1.09 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.06 1.19 6.95 -51.93 -0.36 0.83 16 33 H 0.08 1.34 7.54 -51.93 -0.39 0.95 16 34 H 0.07 1.32 7.96 -51.93 -0.41 0.90 16 35 H 0.17 1.78 8.06 -52.48 -0.42 1.36 16 36 H 0.17 1.51 8.06 -52.48 -0.42 1.09 16 37 H 0.16 2.30 6.50 -52.48 -0.34 1.96 16 38 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 39 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 40 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 41 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 42 H 0.05 1.13 4.83 -51.93 -0.25 0.88 16 43 H 0.09 2.13 7.53 -51.93 -0.39 1.74 16 LS Contribution 343.63 15.07 5.18 5.18 Total: -1.00 -31.74 343.63 -9.29 -41.03 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -5.19 Total: 12.39 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: -4.40 Total: -12.11 kcal Atomic # 7 Polarization: -49.94 SS G_CDS: -0.43 Total: -50.36 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: -0.38 Total: -13.51 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.07 Total: 17.39 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.74 -9.29 -41.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592152826.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.252 kcal (2) G-P(sol) polarization free energy of solvation -31.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds